RNA–Protein interactions for RNA: ENST00000561442.5

USP3-221, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 542 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-221ENST00000561442 RIMBP3BA6NNM3 1639 aa23.82■■□□□ 1.4
USP3-221ENST00000561442 RIMBP3Q9UFD9 1639 aa23.82■■□□□ 1.4
USP3-221ENST00000561442 KIAA0586Q9BVV6 1533 aa23.79■■□□□ 1.4
USP3-221ENST00000561442 JPH4Q96JJ6 628 aa23.78■■□□□ 1.4
USP3-221ENST00000561442 PRG4Q92954 1404 aaPredicted RBP23.72■■□□□ 1.39
USP3-221ENST00000561442 ERCC6L2Q5T890 1561 aa23.72■■□□□ 1.39
USP3-221ENST00000561442 SHROOM2Q13796 1616 aa23.71■■□□□ 1.39
USP3-221ENST00000561442 ARAP1Q96P48 1450 aa23.71■■□□□ 1.39
USP3-221ENST00000561442 CYB5RLQ6IPT4 315 aa23.71■■□□□ 1.39
USP3-221ENST00000561442 EHMT2Q96KQ7 1210 aa23.7■■□□□ 1.38
USP3-221ENST00000561442 IQGAP2Q13576 1575 aa23.67■■□□□ 1.38
USP3-221ENST00000561442 KIF21BO75037 1637 aa23.62■■□□□ 1.37
USP3-221ENST00000561442 CTTNBP2Q8WZ74 1663 aa23.56■■□□□ 1.36
USP3-221ENST00000561442 TTBK1Q5TCY1 1321 aaPredicted RBP23.55■■□□□ 1.36
USP3-221ENST00000561442 GOLGA3Q08378 1498 aa23.55■■□□□ 1.36
USP3-221ENST00000561442 UGGT2Q9NYU1 1516 aa23.54■■□□□ 1.36
USP3-221ENST00000561442 CARMIL2Q6F5E8 1435 aa23.54■■□□□ 1.36
USP3-221ENST00000561442 UBTFP17480 764 aaKnown RBP23.54■■□□□ 1.36
USP3-221ENST00000561442 DISP1Q96F81 1524 aa23.52■■□□□ 1.36
USP3-221ENST00000561442 RANGAP1P46060 587 aaPredicted RBP23.51■■□□□ 1.35
USP3-221ENST00000561442 TNIKQ9UKE5 1360 aa23.47■■□□□ 1.35
USP3-221ENST00000561442 PTPRGP23470 1445 aa23.46■■□□□ 1.35
USP3-221ENST00000561442 KIAA0556O60303 1618 aa23.44■■□□□ 1.34
USP3-221ENST00000561442 P3H3Q8IVL6 736 aa23.43■■□□□ 1.34
USP3-221ENST00000561442 SAMD9Q5K651 1589 aa23.32■■□□□ 1.32
USP3-221ENST00000561442 FHOD3Q2V2M9 1422 aa23.3■■□□□ 1.32
USP3-221ENST00000561442 LOC105371045A0A1W2PR82 267 aa23.29■■□□□ 1.32
USP3-221ENST00000561442 UACAQ9BZF9 1416 aa23.29■■□□□ 1.32
USP3-221ENST00000561442 ADCY10Q96PN6 1610 aa23.28■■□□□ 1.32
USP3-221ENST00000561442 EFCAB5A4FU69 1503 aa23.26■■□□□ 1.31
USP3-221ENST00000561442 PLB1Q6P1J6 1458 aa23.25■■□□□ 1.31
USP3-221ENST00000561442 NPM1P06748 294 aaKnown RBP eCLIP23.25■■□□□ 1.31
USP3-221ENST00000561442 ARHGAP35Q9NRY4 1499 aa23.23■■□□□ 1.31
USP3-221ENST00000561442 ABCC2Q92887 1545 aa23.23■■□□□ 1.31
USP3-221ENST00000561442 UHRF1BP1LA0JNW5 1464 aa23.22■■□□□ 1.31
USP3-221ENST00000561442 TRHP20396 242 aaPredicted RBP23.19■■□□□ 1.3
USP3-221ENST00000561442 ABCA8O94911 1581 aa23.18■■□□□ 1.3
USP3-221ENST00000561442 CLIP1P30622 1438 aa23.16■■□□□ 1.3
USP3-221ENST00000561442 ARID3CA6NKF2 412 aa23.15■■□□□ 1.3
USP3-221ENST00000561442 KDM5BQ9UGL1 1544 aa23.11■■□□□ 1.29
USP3-221ENST00000561442 CEP162Q5TB80 1403 aa23.09■■□□□ 1.29
USP3-221ENST00000561442 RAPGEF6Q8TEU7 1601 aa23.08■■□□□ 1.28
USP3-221ENST00000561442 MAPKBP1O60336 1514 aa23.08■■□□□ 1.28
USP3-221ENST00000561442 FMN1Q68DA7 1419 aa23.07■■□□□ 1.28
USP3-221ENST00000561442 ASXL2Q76L83 1435 aa23.06■■□□□ 1.28
USP3-221ENST00000561442 ZCCHC11Q5TAX3 1644 aaKnown RBP23.05■■□□□ 1.28
USP3-221ENST00000561442 ATP1B4Q9UN42 357 aaPredicted RBP23.05■■□□□ 1.28
USP3-221ENST00000561442 NUP153P49790 1475 aaKnown RBP23.05■■□□□ 1.28
USP3-221ENST00000561442 ATP10BO94823 1461 aa23.03■■□□□ 1.28
USP3-221ENST00000561442 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.02■■□□□ 1.28
USP3-221ENST00000561442 HNRNPUL2Q1KMD3 747 aaKnown RBP23.02■■□□□ 1.28
USP3-221ENST00000561442 FAM69CQ0P6D2 419 aa23■■□□□ 1.27
USP3-221ENST00000561442 ABCC10Q5T3U5 1492 aa22.99■■□□□ 1.27
USP3-221ENST00000561442 WDR7Q9Y4E6 1490 aa22.95■■□□□ 1.26
USP3-221ENST00000561442 DIP2BQ9P265 1576 aa22.94■■□□□ 1.26
USP3-221ENST00000561442 KCNH8Q96L42 1107 aa22.93■■□□□ 1.26
USP3-221ENST00000561442 CASKIN1Q8WXD9 1431 aa22.92■■□□□ 1.26
USP3-221ENST00000561442 HECW1Q76N89 1606 aa22.92■■□□□ 1.26
USP3-221ENST00000561442 PCF11O94913 1555 aaKnown RBP22.92■■□□□ 1.26
USP3-221ENST00000561442 CDK13Q14004 1512 aaKnown RBP22.92■■□□□ 1.26
USP3-221ENST00000561442 EPRSP07814 1512 aaKnown RBP22.91■■□□□ 1.26
USP3-221ENST00000561442 KIF13AQ9H1H9 1805 aa22.87■■□□□ 1.25
USP3-221ENST00000561442 FYCO1Q9BQS8 1478 aa22.86■■□□□ 1.25
USP3-221ENST00000561442 PLEKHD1A6NEE1 506 aa22.86■■□□□ 1.25
USP3-221ENST00000561442 GLI2P10070 1586 aa22.82■■□□□ 1.24
USP3-221ENST00000561442 CDK11AQ9UQ88 783 aaPredicted RBP22.79■■□□□ 1.24
USP3-221ENST00000561442 CCDC18Q5T9S5 1454 aa22.79■■□□□ 1.24
USP3-221ENST00000561442 VPS8Q8N3P4 1428 aa22.78■■□□□ 1.24
USP3-221ENST00000561442 LRRIQ1Q96JM4 1722 aa22.76■■□□□ 1.23
USP3-221ENST00000561442 CD109Q6YHK3 1445 aa22.74■■□□□ 1.23
USP3-221ENST00000561442 TROQ12816 1431 aaPredicted RBP22.72■■□□□ 1.23
USP3-221ENST00000561442 MAP3K4Q9Y6R4 1608 aa22.71■■□□□ 1.23
USP3-221ENST00000561442 TSPOAP1O95153 1857 aa22.71■■□□□ 1.23
USP3-221ENST00000561442 MAGI3Q5TCQ9 1506 aa22.67■■□□□ 1.22
USP3-221ENST00000561442 ABCA9Q8IUA7 1624 aa22.67■■□□□ 1.22
USP3-221ENST00000561442 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP22.66■■□□□ 1.222e-7■■■□□ 16.1
USP3-221ENST00000561442 PPRC1Q5VV67 1664 aaKnown RBP22.65■■□□□ 1.22
USP3-221ENST00000561442 CFAP43Q8NDM7 1665 aa22.65■■□□□ 1.22
USP3-221ENST00000561442 TEX14Q8IWB6 1497 aa22.64■■□□□ 1.21
USP3-221ENST00000561442 KIF14Q15058 1648 aa22.64■■□□□ 1.21
USP3-221ENST00000561442 TTC37Q6PGP7 1564 aa22.63■■□□□ 1.21
USP3-221ENST00000561442 MTUS2Q5JR59 1369 aa22.63■■□□□ 1.21
USP3-221ENST00000561442 TIAM1Q13009 1591 aa22.57■■□□□ 1.2
USP3-221ENST00000561442 APLP2Q06481 763 aa22.56■■□□□ 1.2
USP3-221ENST00000561442 EHBP1L1Q8N3D4 1523 aa22.54■■□□□ 1.2
USP3-221ENST00000561442 KANK4Q5T7N3 995 aaPredicted RBP22.53■■□□□ 1.2
USP3-221ENST00000561442 PLCH2O75038 1416 aa22.53■■□□□ 1.2
USP3-221ENST00000561442 COL17A1Q9UMD9 1497 aaPredicted RBP22.53■■□□□ 1.2
USP3-221ENST00000561442 KDM6BO15054 1643 aa22.53■■□□□ 1.2
USP3-221ENST00000561442 FANCAO15360 1455 aa22.51■■□□□ 1.19
USP3-221ENST00000561442 LRRC9Q6ZRR7 1453 aa22.5■■□□□ 1.19
USP3-221ENST00000561442 NEO1Q92859 1461 aa22.5■■□□□ 1.19
USP3-221ENST00000561442 MAP3K1Q13233 1512 aa22.5■■□□□ 1.19
USP3-221ENST00000561442 EFCAB2Q5VUJ9 269 aa22.48■■□□□ 1.19
USP3-221ENST00000561442 ARHGAP5Q13017 1502 aa22.47■■□□□ 1.19
USP3-221ENST00000561442 AKNAQ7Z591 1439 aa22.47■■□□□ 1.19
USP3-221ENST00000561442 PHLDB1Q86UU1 1377 aa22.46■■□□□ 1.19
USP3-221ENST00000561442 CCNB3Q8WWL7 1395 aa22.46■■□□□ 1.19
USP3-221ENST00000561442 MYO5CQ9NQX4 1742 aa22.45■■□□□ 1.18
USP3-221ENST00000561442 GPATCH8Q9UKJ3 1502 aaKnown RBP22.44■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 96.1 ms