RNA–Protein interactions for RNA: ENST00000561442.5

USP3-221, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 542 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-221ENST00000561442 NISCHQ9Y2I1 1504 aa34.42■■■■□ 3.1
USP3-221ENST00000561442 CCDC180Q9P1Z9 1646 aa30.42■■■□□ 2.46
USP3-221ENST00000561442 ABCC9O60706 1549 aa29.78■■■□□ 2.36
USP3-221ENST00000561442 DCAF8L2P0C7V8 631 aa28.84■■■□□ 2.21
USP3-221ENST00000561442 ZCCHC6Q5VYS8 1495 aaKnown RBP28.72■■■□□ 2.19
USP3-221ENST00000561442 NACADO15069 1562 aa28.62■■■□□ 2.17
USP3-221ENST00000561442 RB1CC1Q8TDY2 1594 aa28.62■■■□□ 2.17
USP3-221ENST00000561442 MYO15BQ96JP2 1530 aa28.46■■■□□ 2.15
USP3-221ENST00000561442 DCAF1Q9Y4B6 1507 aa28.43■■■□□ 2.14
USP3-221ENST00000561442 PABPN1Q86U42 306 aaKnown RBP eCLIP27.91■■■□□ 2.06
USP3-221ENST00000561442 SCRIBQ14160 1630 aa27.91■■■□□ 2.06
USP3-221ENST00000561442 UNC13AQ9UPW8 1703 aa27.88■■■□□ 2.05
USP3-221ENST00000561442 BICRAQ9NZM4 1560 aa27.76■■■□□ 2.03
USP3-221ENST00000561442 SHROOM4Q9ULL8 1493 aa27.45■■□□□ 1.99
USP3-221ENST00000561442 DNAJC5BQ9UF47 199 aa27.2■■□□□ 1.94
USP3-221ENST00000561442 EIF4G1Q04637 1599 aaKnown RBP27.02■■□□□ 1.92
USP3-221ENST00000561442 CC2D2AQ9P2K1 1620 aa26.87■■□□□ 1.89
USP3-221ENST00000561442 CECR2Q9BXF3 1484 aa26.86■■□□□ 1.89
USP3-221ENST00000561442 SMARCA4P51532 1647 aa26.65■■□□□ 1.86
USP3-221ENST00000561442 BAZ1AQ9NRL2 1556 aaPredicted RBP26.64■■□□□ 1.86
USP3-221ENST00000561442 MROH2BQ7Z745 1585 aa26.56■■□□□ 1.84
USP3-221ENST00000561442 ATAD2BQ9ULI0 1458 aa26.51■■□□□ 1.83
USP3-221ENST00000561442 NCAPD3P42695 1498 aa26.43■■□□□ 1.82
USP3-221ENST00000561442 SMARCA2P51531 1590 aa26.43■■□□□ 1.82
USP3-221ENST00000561442 PEG3Q9GZU2 1588 aa26.35■■□□□ 1.81
USP3-221ENST00000561442 RSF1Q96T23 1441 aaPredicted RBP26.33■■□□□ 1.81
USP3-221ENST00000561442 BAZ1BQ9UIG0 1483 aaKnown RBP26.3■■□□□ 1.8
USP3-221ENST00000561442 HMGXB3Q12766 1538 aa26.29■■□□□ 1.8
USP3-221ENST00000561442 WIZO95785 1651 aa26.25■■□□□ 1.79
USP3-221ENST00000561442 TOP2AP11388 1531 aaKnown RBP25.98■■□□□ 1.75
USP3-221ENST00000561442 SUPT5HO00267 1087 aaKnown RBP25.9■■□□□ 1.74
USP3-221ENST00000561442 NESP48681 1621 aa25.81■■□□□ 1.72
USP3-221ENST00000561442 CCDC88BA6NC98 1476 aa25.72■■□□□ 1.71
USP3-221ENST00000561442 CADPSQ9ULU8 1353 aa25.71■■□□□ 1.71
USP3-221ENST00000561442 LAMC3Q9Y6N6 1575 aa25.67■■□□□ 1.7
USP3-221ENST00000561442 ERCC6Q03468 1493 aa25.65■■□□□ 1.7
USP3-221ENST00000561442 CFTRP13569 1480 aa25.57■■□□□ 1.68
USP3-221ENST00000561442 PDS5BQ9NTI5 1447 aa25.55■■□□□ 1.68
USP3-221ENST00000561442 FANCD2Q9BXW9 1451 aa25.42■■□□□ 1.66
USP3-221ENST00000561442 KIF21AQ7Z4S6 1674 aa25.41■■□□□ 1.66
USP3-221ENST00000561442 CEP164Q9UPV0 1460 aa25.36■■□□□ 1.65
USP3-221ENST00000561442 THOC2Q8NI27 1593 aaKnown RBP25.31■■□□□ 1.64
USP3-221ENST00000561442 MRC2Q9UBG0 1479 aa25.29■■□□□ 1.64
USP3-221ENST00000561442 CUX2O14529 1486 aa25.24■■□□□ 1.63
USP3-221ENST00000561442 PRDM2Q13029 1718 aa25.23■■□□□ 1.63
USP3-221ENST00000561442 WDR62O43379 1518 aa25.17■■□□□ 1.62
USP3-221ENST00000561442 URB2Q14146 1524 aaKnown RBP25.15■■□□□ 1.62
USP3-221ENST00000561442 TOPBP1Q92547 1522 aa25.02■■□□□ 1.6
USP3-221ENST00000561442 DNMBPQ6XZF7 1577 aa24.97■■□□□ 1.59
USP3-221ENST00000561442 ABCC8Q09428 1581 aa24.97■■□□□ 1.59
USP3-221ENST00000561442 CUX1P39880 1505 aa24.91■■□□□ 1.58
USP3-221ENST00000561442 POLA1P09884 1462 aaPredicted RBP24.83■■□□□ 1.56
USP3-221ENST00000561442 WRNQ14191 1432 aaPredicted RBP eCLIP24.82■■□□□ 1.56
USP3-221ENST00000561442 IFT140Q96RY7 1462 aa24.81■■□□□ 1.56
USP3-221ENST00000561442 FGD5Q6ZNL6 1462 aa24.8■■□□□ 1.56
USP3-221ENST00000561442 RAD54L2Q9Y4B4 1467 aa24.77■■□□□ 1.56
USP3-221ENST00000561442 SOGA1O94964 1423 aa24.75■■□□□ 1.55
USP3-221ENST00000561442 SYNJ1O43426 1573 aa24.73■■□□□ 1.55
USP3-221ENST00000561442 ZNF608Q9ULD9 1512 aaPredicted RBP24.73■■□□□ 1.55
USP3-221ENST00000561442 TARBP1Q13395 1621 aaKnown RBP24.69■■□□□ 1.54
USP3-221ENST00000561442 TOP2BQ02880 1626 aa24.68■■□□□ 1.54
USP3-221ENST00000561442 BIVM-ERCC5R4GMW8 1640 aa24.65■■□□□ 1.54
USP3-221ENST00000561442 AQRO60306 1485 aaKnown RBP eCLIP24.63■■□□□ 1.532e-6■■■■□ 23.2
USP3-221ENST00000561442 TDRD9Q8NDG6 1382 aaKnown RBP24.62■■□□□ 1.53
USP3-221ENST00000561442 EIF4G3O43432 1585 aaKnown RBP24.58■■□□□ 1.52
USP3-221ENST00000561442 ABCA10Q8WWZ4 1543 aa24.54■■□□□ 1.52
USP3-221ENST00000561442 WDR97A6NE52 1622 aa24.49■■□□□ 1.51
USP3-221ENST00000561442 GAPVD1Q14C86 1478 aa24.45■■□□□ 1.5
USP3-221ENST00000561442 GRIN2BQ13224 1484 aa24.41■■□□□ 1.5
USP3-221ENST00000561442 TRIM41Q8WV44 630 aa24.41■■□□□ 1.5
USP3-221ENST00000561442 ABCA5Q8WWZ7 1642 aa24.39■■□□□ 1.5
USP3-221ENST00000561442 SNAPC4Q5SXM2 1469 aa24.38■■□□□ 1.49
USP3-221ENST00000561442 FBLN2P98095 1184 aa24.35■■□□□ 1.49
USP3-221ENST00000561442 DNAJC5Q9H3Z4 198 aa24.31■■□□□ 1.48
USP3-221ENST00000561442 MAGI1Q96QZ7 1491 aaPredicted RBP24.31■■□□□ 1.48
USP3-221ENST00000561442 PBRM1Q86U86 1689 aa24.3■■□□□ 1.48
USP3-221ENST00000561442 KIF27Q86VH2 1401 aa24.28■■□□□ 1.48
USP3-221ENST00000561442 OSCARQ8IYS5 282 aa24.28■■□□□ 1.48
USP3-221ENST00000561442 CHMP7Q8WUX9 453 aaPredicted RBP24.26■■□□□ 1.47
USP3-221ENST00000561442 CHIC1Q5VXU3 224 aa24.23■■□□□ 1.47
USP3-221ENST00000561442 ERICH3Q5RHP9 1530 aa24.23■■□□□ 1.47
USP3-221ENST00000561442 SYNJ2O15056 1496 aa24.22■■□□□ 1.47
USP3-221ENST00000561442 CHD1O14646 1710 aa24.19■■□□□ 1.46
USP3-221ENST00000561442 IGF1RP08069 1367 aa24.18■■□□□ 1.46
USP3-221ENST00000561442 ADAMTS12P58397 1594 aa24.18■■□□□ 1.46
USP3-221ENST00000561442 FHAD1B1AJZ9 1412 aa24.17■■□□□ 1.46
USP3-221ENST00000561442 RUSC2Q8N2Y8 1516 aa24.16■■□□□ 1.46
USP3-221ENST00000561442 GRIN2AQ12879 1464 aa24.1■■□□□ 1.45
USP3-221ENST00000561442 CARMIL1Q5VZK9 1371 aa24.04■■□□□ 1.44
USP3-221ENST00000561442 CUL7Q14999 1698 aa24.01■■□□□ 1.43
USP3-221ENST00000561442 NUP160Q12769 1436 aa23.98■■□□□ 1.43
USP3-221ENST00000561442 CLASP1Q7Z460 1538 aa23.98■■□□□ 1.43
USP3-221ENST00000561442 FAM9AQ8IZU1 332 aaPredicted RBP23.97■■□□□ 1.43
USP3-221ENST00000561442 CEP170Q5SW79 1584 aa23.96■■□□□ 1.43
USP3-221ENST00000561442 CSRNP3Q8WYN3 585 aa23.91■■□□□ 1.42
USP3-221ENST00000561442 EEA1Q15075 1411 aa23.9■■□□□ 1.42
USP3-221ENST00000561442 RAPGEF2Q9Y4G8 1499 aa23.89■■□□□ 1.42
USP3-221ENST00000561442 ARHGEF11O15085 1522 aa23.87■■□□□ 1.41
USP3-221ENST00000561442 PRXQ9BXM0 1461 aa23.85■■□□□ 1.41
USP3-221ENST00000561442 RIMBP3CA6NJZ7 1639 aa23.82■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms