RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 KIAA0586Q9BVV6 1533 aa21.73■■□□□ 1.07
NEDD8-208ENST00000560427 SHROOM2Q13796 1616 aa21.73■■□□□ 1.07
NEDD8-208ENST00000560427 CSRNP3Q8WYN3 585 aa21.69■■□□□ 1.06
NEDD8-208ENST00000560427 IQGAP2Q13576 1575 aa21.61■■□□□ 1.05
NEDD8-208ENST00000560427 ARAP1Q96P48 1450 aa21.61■■□□□ 1.05
NEDD8-208ENST00000560427 JPH4Q96JJ6 628 aa21.61■■□□□ 1.05
NEDD8-208ENST00000560427 PRG4Q92954 1404 aaPredicted RBP21.58■■□□□ 1.05
NEDD8-208ENST00000560427 KIF21BO75037 1637 aa21.58■■□□□ 1.04
NEDD8-208ENST00000560427 CTTNBP2Q8WZ74 1663 aa21.56■■□□□ 1.04
NEDD8-208ENST00000560427 ERCC6L2Q5T890 1561 aa21.55■■□□□ 1.04
NEDD8-208ENST00000560427 FAM9AQ8IZU1 332 aaPredicted RBP21.54■■□□□ 1.04
NEDD8-208ENST00000560427 UGGT2Q9NYU1 1516 aa21.52■■□□□ 1.04
NEDD8-208ENST00000560427 CARMIL2Q6F5E8 1435 aa21.5■■□□□ 1.03
NEDD8-208ENST00000560427 CYB5RLQ6IPT4 315 aa21.5■■□□□ 1.03
NEDD8-208ENST00000560427 GOLGA3Q08378 1498 aa21.45■■□□□ 1.03
NEDD8-208ENST00000560427 DISP1Q96F81 1524 aa21.43■■□□□ 1.02
NEDD8-208ENST00000560427 KIAA0556O60303 1618 aa21.41■■□□□ 1.02
NEDD8-208ENST00000560427 TNIKQ9UKE5 1360 aa21.4■■□□□ 1.02
NEDD8-208ENST00000560427 PTPRGP23470 1445 aa21.35■■□□□ 1.01
NEDD8-208ENST00000560427 SAMD9Q5K651 1589 aa21.31■■□□□ 1
NEDD8-208ENST00000560427 UBTFP17480 764 aaKnown RBP21.29■■□□□ 1
NEDD8-208ENST00000560427 EFCAB5A4FU69 1503 aa21.29■■□□□ 1
NEDD8-208ENST00000560427 ADCY10Q96PN6 1610 aa21.25■□□□□ 0.99
NEDD8-208ENST00000560427 UHRF1BP1LA0JNW5 1464 aa21.25■□□□□ 0.99
NEDD8-208ENST00000560427 UACAQ9BZF9 1416 aa21.24■□□□□ 0.99
NEDD8-208ENST00000560427 ABCC2Q92887 1545 aa21.21■□□□□ 0.99
NEDD8-208ENST00000560427 EHMT2Q96KQ7 1210 aa21.18■□□□□ 0.98
NEDD8-208ENST00000560427 TTBK1Q5TCY1 1321 aaPredicted RBP21.17■□□□□ 0.98
NEDD8-208ENST00000560427 ABCA8O94911 1581 aa21.17■□□□□ 0.98
NEDD8-208ENST00000560427 MAPKBP1O60336 1514 aa21.16■□□□□ 0.98
NEDD8-208ENST00000560427 NPM1P06748 294 aaKnown RBP eCLIP21.16■□□□□ 0.98
NEDD8-208ENST00000560427 PLB1Q6P1J6 1458 aa21.13■□□□□ 0.97
NEDD8-208ENST00000560427 KDM5BQ9UGL1 1544 aa21.13■□□□□ 0.97
NEDD8-208ENST00000560427 FHOD3Q2V2M9 1422 aa21.12■□□□□ 0.97
NEDD8-208ENST00000560427 P3H3Q8IVL6 736 aa21.12■□□□□ 0.97
NEDD8-208ENST00000560427 ARHGAP35Q9NRY4 1499 aa21.12■□□□□ 0.97
NEDD8-208ENST00000560427 RANGAP1P46060 587 aaPredicted RBP21.11■□□□□ 0.97
NEDD8-208ENST00000560427 FMN1Q68DA7 1419 aa21.07■□□□□ 0.96
NEDD8-208ENST00000560427 RAPGEF6Q8TEU7 1601 aa21.07■□□□□ 0.96
NEDD8-208ENST00000560427 ZCCHC11Q5TAX3 1644 aaKnown RBP21.04■□□□□ 0.96
NEDD8-208ENST00000560427 CLIP1P30622 1438 aa21.04■□□□□ 0.96
NEDD8-208ENST00000560427 TRHP20396 242 aaPredicted RBP21.01■□□□□ 0.95
NEDD8-208ENST00000560427 ABCC10Q5T3U5 1492 aa21.01■□□□□ 0.95
NEDD8-208ENST00000560427 ASXL2Q76L83 1435 aa21■□□□□ 0.95
NEDD8-208ENST00000560427 NUP153P49790 1475 aaKnown RBP20.99■□□□□ 0.95
NEDD8-208ENST00000560427 DIP2BQ9P265 1576 aa20.97■□□□□ 0.95
NEDD8-208ENST00000560427 CEP162Q5TB80 1403 aa20.97■□□□□ 0.95
NEDD8-208ENST00000560427 ATP10BO94823 1461 aa20.95■□□□□ 0.94
NEDD8-208ENST00000560427 WDR7Q9Y4E6 1490 aa20.94■□□□□ 0.94
NEDD8-208ENST00000560427 HECW1Q76N89 1606 aa20.94■□□□□ 0.94
NEDD8-208ENST00000560427 KIF13AQ9H1H9 1805 aa20.92■□□□□ 0.94
NEDD8-208ENST00000560427 GLI2P10070 1586 aa20.92■□□□□ 0.94
NEDD8-208ENST00000560427 LOC105371045A0A1W2PR82 267 aa20.91■□□□□ 0.94
NEDD8-208ENST00000560427 EPRSP07814 1512 aaKnown RBP20.89■□□□□ 0.94
NEDD8-208ENST00000560427 CASKIN1Q8WXD9 1431 aa20.89■□□□□ 0.94
NEDD8-208ENST00000560427 FAM69CQ0P6D2 419 aa20.88■□□□□ 0.93
NEDD8-208ENST00000560427 FYCO1Q9BQS8 1478 aa20.88■□□□□ 0.93
NEDD8-208ENST00000560427 PCF11O94913 1555 aaKnown RBP20.86■□□□□ 0.93
NEDD8-208ENST00000560427 CCDC18Q5T9S5 1454 aa20.84■□□□□ 0.93
NEDD8-208ENST00000560427 ARID3CA6NKF2 412 aa20.83■□□□□ 0.93
NEDD8-208ENST00000560427 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.82■□□□□ 0.92
NEDD8-208ENST00000560427 HNRNPUL2Q1KMD3 747 aaKnown RBP20.82■□□□□ 0.92
NEDD8-208ENST00000560427 CDK13Q14004 1512 aaKnown RBP20.81■□□□□ 0.92
NEDD8-208ENST00000560427 MAP3K4Q9Y6R4 1608 aa20.8■□□□□ 0.92
NEDD8-208ENST00000560427 PLEKHD1A6NEE1 506 aa20.78■□□□□ 0.92
NEDD8-208ENST00000560427 ATP1B4Q9UN42 357 aaPredicted RBP20.77■□□□□ 0.92
NEDD8-208ENST00000560427 CDK11AQ9UQ88 783 aaPredicted RBP20.77■□□□□ 0.92
NEDD8-208ENST00000560427 CFAP43Q8NDM7 1665 aa20.77■□□□□ 0.91
NEDD8-208ENST00000560427 LRRIQ1Q96JM4 1722 aa20.75■□□□□ 0.91
NEDD8-208ENST00000560427 ABCA9Q8IUA7 1624 aa20.75■□□□□ 0.91
NEDD8-208ENST00000560427 VPS8Q8N3P4 1428 aa20.74■□□□□ 0.91
NEDD8-208ENST00000560427 TEX14Q8IWB6 1497 aa20.74■□□□□ 0.91
NEDD8-208ENST00000560427 KCNH8Q96L42 1107 aa20.72■□□□□ 0.91
NEDD8-208ENST00000560427 MAGI3Q5TCQ9 1506 aa20.72■□□□□ 0.91
NEDD8-208ENST00000560427 CD109Q6YHK3 1445 aa20.71■□□□□ 0.91
NEDD8-208ENST00000560427 PPRC1Q5VV67 1664 aaKnown RBP20.7■□□□□ 0.91
NEDD8-208ENST00000560427 TROQ12816 1431 aaPredicted RBP20.7■□□□□ 0.9
NEDD8-208ENST00000560427 KIF14Q15058 1648 aa20.67■□□□□ 0.9
NEDD8-208ENST00000560427 TSPOAP1O95153 1857 aa20.67■□□□□ 0.9
NEDD8-208ENST00000560427 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP20.65■□□□□ 0.9
NEDD8-208ENST00000560427 TTC37Q6PGP7 1564 aa20.62■□□□□ 0.89
NEDD8-208ENST00000560427 KDM6BO15054 1643 aa20.6■□□□□ 0.89
NEDD8-208ENST00000560427 MAP3K1Q13233 1512 aa20.6■□□□□ 0.89
NEDD8-208ENST00000560427 PHLDB1Q86UU1 1377 aa20.59■□□□□ 0.89
NEDD8-208ENST00000560427 ARAP3Q8WWN8 1544 aa20.59■□□□□ 0.89
NEDD8-208ENST00000560427 EHBP1L1Q8N3D4 1523 aa20.58■□□□□ 0.89
NEDD8-208ENST00000560427 NEO1Q92859 1461 aa20.58■□□□□ 0.89
NEDD8-208ENST00000560427 TIAM1Q13009 1591 aa20.58■□□□□ 0.88
NEDD8-208ENST00000560427 CFAP74Q9C0B2 1584 aa20.57■□□□□ 0.88
NEDD8-208ENST00000560427 MTUS2Q5JR59 1369 aa20.57■□□□□ 0.88
NEDD8-208ENST00000560427 PLCH2O75038 1416 aa20.54■□□□□ 0.88
NEDD8-208ENST00000560427 MYO5CQ9NQX4 1742 aa20.54■□□□□ 0.88
NEDD8-208ENST00000560427 FANCAO15360 1455 aa20.52■□□□□ 0.88
NEDD8-208ENST00000560427 PREX2Q70Z35 1606 aa20.49■□□□□ 0.87
NEDD8-208ENST00000560427 LRRC9Q6ZRR7 1453 aa20.48■□□□□ 0.87
NEDD8-208ENST00000560427 COL17A1Q9UMD9 1497 aaPredicted RBP20.47■□□□□ 0.87
NEDD8-208ENST00000560427 AKNAQ7Z591 1439 aa20.46■□□□□ 0.87
NEDD8-208ENST00000560427 APLP2Q06481 763 aa20.46■□□□□ 0.87
NEDD8-208ENST00000560427 SUPT6HQ7KZ85 1726 aaKnown RBP20.46■□□□□ 0.87
NEDD8-208ENST00000560427 ARHGAP5Q13017 1502 aa20.46■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms