RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 NISCHQ9Y2I1 1504 aa31.42■■■□□ 2.62
NEDD8-208ENST00000560427 CCDC180Q9P1Z9 1646 aa27.94■■■□□ 2.06
NEDD8-208ENST00000560427 ABCC9O60706 1549 aa27.07■■□□□ 1.92
NEDD8-208ENST00000560427 ZCCHC6Q5VYS8 1495 aaKnown RBP26.23■■□□□ 1.79
NEDD8-208ENST00000560427 NACADO15069 1562 aa26.22■■□□□ 1.79
NEDD8-208ENST00000560427 RB1CC1Q8TDY2 1594 aa26.2■■□□□ 1.79
NEDD8-208ENST00000560427 MYO15BQ96JP2 1530 aa26.18■■□□□ 1.78
NEDD8-208ENST00000560427 DCAF1Q9Y4B6 1507 aa26.09■■□□□ 1.77
NEDD8-208ENST00000560427 DCAF8L2P0C7V8 631 aa26.03■■□□□ 1.76
NEDD8-208ENST00000560427 UNC13AQ9UPW8 1703 aa25.51■■□□□ 1.67
NEDD8-208ENST00000560427 SCRIBQ14160 1630 aa25.39■■□□□ 1.66
NEDD8-208ENST00000560427 BICRAQ9NZM4 1560 aa25.35■■□□□ 1.65
NEDD8-208ENST00000560427 SHROOM4Q9ULL8 1493 aa25.27■■□□□ 1.64
NEDD8-208ENST00000560427 PABPN1Q86U42 306 aaKnown RBP eCLIP25.26■■□□□ 1.63
NEDD8-208ENST00000560427 EIF4G1Q04637 1599 aaKnown RBP24.69■■□□□ 1.54
NEDD8-208ENST00000560427 DNAJC5BQ9UF47 199 aa24.64■■□□□ 1.54
NEDD8-208ENST00000560427 CC2D2AQ9P2K1 1620 aa24.53■■□□□ 1.52
NEDD8-208ENST00000560427 CECR2Q9BXF3 1484 aa24.39■■□□□ 1.5
NEDD8-208ENST00000560427 BAZ1AQ9NRL2 1556 aaPredicted RBP24.37■■□□□ 1.49
NEDD8-208ENST00000560427 SMARCA4P51532 1647 aa24.35■■□□□ 1.49
NEDD8-208ENST00000560427 SMARCA2P51531 1590 aa24.2■■□□□ 1.47
NEDD8-208ENST00000560427 ATAD2BQ9ULI0 1458 aa24.18■■□□□ 1.46
NEDD8-208ENST00000560427 MROH2BQ7Z745 1585 aa24.17■■□□□ 1.46
NEDD8-208ENST00000560427 NCAPD3P42695 1498 aa24.17■■□□□ 1.46
NEDD8-208ENST00000560427 PEG3Q9GZU2 1588 aa24.16■■□□□ 1.46
NEDD8-208ENST00000560427 HMGXB3Q12766 1538 aa24.1■■□□□ 1.45
NEDD8-208ENST00000560427 BAZ1BQ9UIG0 1483 aaKnown RBP24■■□□□ 1.43
NEDD8-208ENST00000560427 RSF1Q96T23 1441 aaPredicted RBP23.95■■□□□ 1.42
NEDD8-208ENST00000560427 WIZO95785 1651 aa23.89■■□□□ 1.42
NEDD8-208ENST00000560427 TOP2AP11388 1531 aaKnown RBP23.74■■□□□ 1.39
NEDD8-208ENST00000560427 LAMC3Q9Y6N6 1575 aa23.52■■□□□ 1.36
NEDD8-208ENST00000560427 CADPSQ9ULU8 1353 aa23.45■■□□□ 1.34
NEDD8-208ENST00000560427 NESP48681 1621 aa23.44■■□□□ 1.34
NEDD8-208ENST00000560427 CCDC88BA6NC98 1476 aa23.39■■□□□ 1.34
NEDD8-208ENST00000560427 ERCC6Q03468 1493 aa23.37■■□□□ 1.33
NEDD8-208ENST00000560427 CFTRP13569 1480 aa23.36■■□□□ 1.33
NEDD8-208ENST00000560427 PDS5BQ9NTI5 1447 aa23.35■■□□□ 1.33
NEDD8-208ENST00000560427 SUPT5HO00267 1087 aaKnown RBP23.34■■□□□ 1.33
NEDD8-208ENST00000560427 KIF21AQ7Z4S6 1674 aa23.2■■□□□ 1.3
NEDD8-208ENST00000560427 PRDM2Q13029 1718 aa23.19■■□□□ 1.3
NEDD8-208ENST00000560427 FANCD2Q9BXW9 1451 aa23.17■■□□□ 1.3
NEDD8-208ENST00000560427 CEP164Q9UPV0 1460 aa23.16■■□□□ 1.3
NEDD8-208ENST00000560427 THOC2Q8NI27 1593 aaKnown RBP23.14■■□□□ 1.3
NEDD8-208ENST00000560427 CUX2O14529 1486 aa23.14■■□□□ 1.29
NEDD8-208ENST00000560427 MRC2Q9UBG0 1479 aa23.1■■□□□ 1.29
NEDD8-208ENST00000560427 WDR62O43379 1518 aa23.03■■□□□ 1.28
NEDD8-208ENST00000560427 URB2Q14146 1524 aaKnown RBP22.91■■□□□ 1.26
NEDD8-208ENST00000560427 ABCC8Q09428 1581 aa22.89■■□□□ 1.26
NEDD8-208ENST00000560427 DNMBPQ6XZF7 1577 aa22.84■■□□□ 1.25
NEDD8-208ENST00000560427 TOPBP1Q92547 1522 aa22.82■■□□□ 1.24
NEDD8-208ENST00000560427 IFT140Q96RY7 1462 aa22.68■■□□□ 1.22
NEDD8-208ENST00000560427 CUX1P39880 1505 aa22.67■■□□□ 1.22
NEDD8-208ENST00000560427 POLA1P09884 1462 aaPredicted RBP22.64■■□□□ 1.21
NEDD8-208ENST00000560427 WRNQ14191 1432 aaPredicted RBP eCLIP22.61■■□□□ 1.21
NEDD8-208ENST00000560427 FGD5Q6ZNL6 1462 aa22.6■■□□□ 1.21
NEDD8-208ENST00000560427 TARBP1Q13395 1621 aaKnown RBP22.57■■□□□ 1.2
NEDD8-208ENST00000560427 TOP2BQ02880 1626 aa22.56■■□□□ 1.2
NEDD8-208ENST00000560427 BIVM-ERCC5R4GMW8 1640 aa22.56■■□□□ 1.2
NEDD8-208ENST00000560427 SYNJ1O43426 1573 aa22.52■■□□□ 1.2
NEDD8-208ENST00000560427 SOGA1O94964 1423 aa22.52■■□□□ 1.2
NEDD8-208ENST00000560427 WDR97A6NE52 1622 aa22.5■■□□□ 1.19
NEDD8-208ENST00000560427 ZNF608Q9ULD9 1512 aaPredicted RBP22.49■■□□□ 1.19
NEDD8-208ENST00000560427 RAD54L2Q9Y4B4 1467 aa22.47■■□□□ 1.19
NEDD8-208ENST00000560427 EIF4G3O43432 1585 aaKnown RBP22.46■■□□□ 1.19
NEDD8-208ENST00000560427 ABCA10Q8WWZ4 1543 aa22.42■■□□□ 1.18
NEDD8-208ENST00000560427 AQRO60306 1485 aaKnown RBP eCLIP22.36■■□□□ 1.178e-8■■□□□ 11.9
NEDD8-208ENST00000560427 TDRD9Q8NDG6 1382 aaKnown RBP22.34■■□□□ 1.17
NEDD8-208ENST00000560427 ABCA5Q8WWZ7 1642 aa22.31■■□□□ 1.16
NEDD8-208ENST00000560427 GRIN2BQ13224 1484 aa22.29■■□□□ 1.16
NEDD8-208ENST00000560427 GAPVD1Q14C86 1478 aa22.28■■□□□ 1.16
NEDD8-208ENST00000560427 MAGI1Q96QZ7 1491 aaPredicted RBP22.25■■□□□ 1.15
NEDD8-208ENST00000560427 PBRM1Q86U86 1689 aa22.22■■□□□ 1.15
NEDD8-208ENST00000560427 SNAPC4Q5SXM2 1469 aa22.21■■□□□ 1.15
NEDD8-208ENST00000560427 ERICH3Q5RHP9 1530 aa22.17■■□□□ 1.14
NEDD8-208ENST00000560427 DNAJC5Q9H3Z4 198 aa22.17■■□□□ 1.14
NEDD8-208ENST00000560427 KIF27Q86VH2 1401 aa22.14■■□□□ 1.14
NEDD8-208ENST00000560427 SYNJ2O15056 1496 aa22.14■■□□□ 1.13
NEDD8-208ENST00000560427 OSCARQ8IYS5 282 aa22.12■■□□□ 1.13
NEDD8-208ENST00000560427 CHD1O14646 1710 aa22.1■■□□□ 1.13
NEDD8-208ENST00000560427 TRIM41Q8WV44 630 aa22.1■■□□□ 1.13
NEDD8-208ENST00000560427 ADAMTS12P58397 1594 aa22.09■■□□□ 1.13
NEDD8-208ENST00000560427 FHAD1B1AJZ9 1412 aa22.06■■□□□ 1.12
NEDD8-208ENST00000560427 CHMP7Q8WUX9 453 aaPredicted RBP22.05■■□□□ 1.12
NEDD8-208ENST00000560427 FBLN2P98095 1184 aa22.03■■□□□ 1.12
NEDD8-208ENST00000560427 CUL7Q14999 1698 aa22■■□□□ 1.11
NEDD8-208ENST00000560427 GRIN2AQ12879 1464 aa21.99■■□□□ 1.11
NEDD8-208ENST00000560427 IGF1RP08069 1367 aa21.99■■□□□ 1.11
NEDD8-208ENST00000560427 CLASP1Q7Z460 1538 aa21.92■■□□□ 1.1
NEDD8-208ENST00000560427 NUP160Q12769 1436 aa21.91■■□□□ 1.1
NEDD8-208ENST00000560427 CHIC1Q5VXU3 224 aa21.89■■□□□ 1.09
NEDD8-208ENST00000560427 CARMIL1Q5VZK9 1371 aa21.87■■□□□ 1.09
NEDD8-208ENST00000560427 RUSC2Q8N2Y8 1516 aa21.86■■□□□ 1.09
NEDD8-208ENST00000560427 EEA1Q15075 1411 aa21.86■■□□□ 1.09
NEDD8-208ENST00000560427 CEP170Q5SW79 1584 aa21.85■■□□□ 1.09
NEDD8-208ENST00000560427 ARHGEF11O15085 1522 aa21.79■■□□□ 1.08
NEDD8-208ENST00000560427 RAPGEF2Q9Y4G8 1499 aa21.78■■□□□ 1.08
NEDD8-208ENST00000560427 RIMBP3CA6NJZ7 1639 aa21.76■■□□□ 1.07
NEDD8-208ENST00000560427 RIMBP3BA6NNM3 1639 aa21.76■■□□□ 1.07
NEDD8-208ENST00000560427 RIMBP3Q9UFD9 1639 aa21.76■■□□□ 1.07
NEDD8-208ENST00000560427 PRXQ9BXM0 1461 aa21.75■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms