RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 RANGAP1P46060 587 aaPredicted RBP17.87■□□□□ 0.45
USP3-218ENST00000560202 FBLN2P98095 1184 aa17.86■□□□□ 0.45
USP3-218ENST00000560202 CTTNBP2Q8WZ74 1663 aa17.82■□□□□ 0.44
USP3-218ENST00000560202 ARHGAP35Q9NRY4 1499 aa17.77■□□□□ 0.43
USP3-218ENST00000560202 NUP160Q12769 1436 aa17.76■□□□□ 0.43
USP3-218ENST00000560202 KIAA0586Q9BVV6 1533 aa17.76■□□□□ 0.43
USP3-218ENST00000560202 CEP170Q5SW79 1584 aa17.75■□□□□ 0.43
USP3-218ENST00000560202 IQGAP2Q13576 1575 aa17.75■□□□□ 0.43
USP3-218ENST00000560202 ARAP1Q96P48 1450 aa17.73■□□□□ 0.43
USP3-218ENST00000560202 CHD1O14646 1710 aa17.72■□□□□ 0.43
USP3-218ENST00000560202 EFCAB5A4FU69 1503 aa17.71■□□□□ 0.43
USP3-218ENST00000560202 VPS8Q8N3P4 1428 aa17.69■□□□□ 0.42
USP3-218ENST00000560202 P3H3Q8IVL6 736 aa17.68■□□□□ 0.42
USP3-218ENST00000560202 UGGT2Q9NYU1 1516 aa17.67■□□□□ 0.42
USP3-218ENST00000560202 SAMD9Q5K651 1589 aa17.66■□□□□ 0.42
USP3-218ENST00000560202 FHOD3Q2V2M9 1422 aa17.64■□□□□ 0.41
USP3-218ENST00000560202 JPH4Q96JJ6 628 aa17.64■□□□□ 0.41
USP3-218ENST00000560202 DISP1Q96F81 1524 aa17.6■□□□□ 0.41
USP3-218ENST00000560202 KIAA0556O60303 1618 aa17.57■□□□□ 0.4
USP3-218ENST00000560202 FMN1Q68DA7 1419 aa17.56■□□□□ 0.4
USP3-218ENST00000560202 CLASP1Q7Z460 1538 aa17.56■□□□□ 0.4
USP3-218ENST00000560202 CARMIL2Q6F5E8 1435 aa17.56■□□□□ 0.4
USP3-218ENST00000560202 PRG4Q92954 1404 aaPredicted RBP17.53■□□□□ 0.4
USP3-218ENST00000560202 APLP2Q06481 763 aa17.53■□□□□ 0.4
USP3-218ENST00000560202 OSCARQ8IYS5 282 aa17.52■□□□□ 0.4
USP3-218ENST00000560202 SHROOM2Q13796 1616 aa17.52■□□□□ 0.39
USP3-218ENST00000560202 CASKIN1Q8WXD9 1431 aa17.5■□□□□ 0.39
USP3-218ENST00000560202 PPARGC1BQ86YN6 1023 aaKnown RBP17.5■□□□□ 0.39
USP3-218ENST00000560202 PCF11O94913 1555 aaKnown RBP17.49■□□□□ 0.39
USP3-218ENST00000560202 FYCO1Q9BQS8 1478 aa17.48■□□□□ 0.39
USP3-218ENST00000560202 TTBK1Q5TCY1 1321 aaPredicted RBP17.47■□□□□ 0.39
USP3-218ENST00000560202 ATP1B4Q9UN42 357 aaPredicted RBP17.47■□□□□ 0.39
USP3-218ENST00000560202 MAP3K1Q13233 1512 aa17.42■□□□□ 0.38
USP3-218ENST00000560202 ERCC6L2Q5T890 1561 aa17.41■□□□□ 0.38
USP3-218ENST00000560202 PTPRGP23470 1445 aa17.41■□□□□ 0.38
USP3-218ENST00000560202 KANK4Q5T7N3 995 aaPredicted RBP17.39■□□□□ 0.37
USP3-218ENST00000560202 TIAM1Q13009 1591 aa17.39■□□□□ 0.37
USP3-218ENST00000560202 HECW1Q76N89 1606 aa17.37■□□□□ 0.37
USP3-218ENST00000560202 PLB1Q6P1J6 1458 aa17.37■□□□□ 0.37
USP3-218ENST00000560202 RAPGEF6Q8TEU7 1601 aa17.36■□□□□ 0.37
USP3-218ENST00000560202 CCDC18Q5T9S5 1454 aa17.34■□□□□ 0.37
USP3-218ENST00000560202 CFAP43Q8NDM7 1665 aa17.34■□□□□ 0.37
USP3-218ENST00000560202 TRIM26Q12899 539 aaPredicted RBP17.34■□□□□ 0.37
USP3-218ENST00000560202 NUP153P49790 1475 aaKnown RBP17.34■□□□□ 0.37
USP3-218ENST00000560202 EPRSP07814 1512 aaKnown RBP17.34■□□□□ 0.37
USP3-218ENST00000560202 ABCA8O94911 1581 aa17.33■□□□□ 0.37
USP3-218ENST00000560202 LRRC9Q6ZRR7 1453 aa17.33■□□□□ 0.36
USP3-218ENST00000560202 LRRIQ1Q96JM4 1722 aa17.32■□□□□ 0.36
USP3-218ENST00000560202 ARID3CA6NKF2 412 aa17.31■□□□□ 0.36
USP3-218ENST00000560202 UACAQ9BZF9 1416 aa17.3■□□□□ 0.36
USP3-218ENST00000560202 CDK13Q14004 1512 aaKnown RBP17.29■□□□□ 0.36
USP3-218ENST00000560202 MTUS2Q5JR59 1369 aa17.27■□□□□ 0.36
USP3-218ENST00000560202 PCGF6Q9BYE7 350 aa17.26■□□□□ 0.35
USP3-218ENST00000560202 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.26■□□□□ 0.35
USP3-218ENST00000560202 HNRNPUL2Q1KMD3 747 aaKnown RBP17.26■□□□□ 0.35
USP3-218ENST00000560202 ABCC2Q92887 1545 aa17.23■□□□□ 0.35
USP3-218ENST00000560202 ATP10BO94823 1461 aa17.23■□□□□ 0.35
USP3-218ENST00000560202 MAGI3Q5TCQ9 1506 aa17.23■□□□□ 0.35
USP3-218ENST00000560202 CDK11AQ9UQ88 783 aaPredicted RBP17.23■□□□□ 0.35
USP3-218ENST00000560202 EHBP1L1Q8N3D4 1523 aa17.22■□□□□ 0.35
USP3-218ENST00000560202 UHRF1BP1LA0JNW5 1464 aa17.22■□□□□ 0.35
USP3-218ENST00000560202 ARHGEF11O15085 1522 aa17.2■□□□□ 0.34
USP3-218ENST00000560202 PHLDB1Q86UU1 1377 aa17.17■□□□□ 0.34
USP3-218ENST00000560202 PLEKHD1A6NEE1 506 aa17.16■□□□□ 0.34
USP3-218ENST00000560202 TROQ12816 1431 aaPredicted RBP17.16■□□□□ 0.34
USP3-218ENST00000560202 NCOA2Q15596 1464 aa17.15■□□□□ 0.34
USP3-218ENST00000560202 KDM5BQ9UGL1 1544 aa17.14■□□□□ 0.34
USP3-218ENST00000560202 SUPT6HQ7KZ85 1726 aaKnown RBP17.14■□□□□ 0.33
USP3-218ENST00000560202 ADCY10Q96PN6 1610 aa17.13■□□□□ 0.33
USP3-218ENST00000560202 RRBP1Q9P2E9 1410 aaKnown RBP17.12■□□□□ 0.33
USP3-218ENST00000560202 RIMBP3CA6NJZ7 1639 aa17.12■□□□□ 0.33
USP3-218ENST00000560202 RIMBP3BA6NNM3 1639 aa17.12■□□□□ 0.33
USP3-218ENST00000560202 RIMBP3Q9UFD9 1639 aa17.12■□□□□ 0.33
USP3-218ENST00000560202 CCNB3Q8WWL7 1395 aa17.1■□□□□ 0.33
USP3-218ENST00000560202 ZCCHC11Q5TAX3 1644 aaKnown RBP17.09■□□□□ 0.33
USP3-218ENST00000560202 MYOM3Q5VTT5 1437 aa17.07■□□□□ 0.32
USP3-218ENST00000560202 CYB5RLQ6IPT4 315 aa17.07■□□□□ 0.32
USP3-218ENST00000560202 FGD6Q6ZV73 1430 aa17.05■□□□□ 0.32
USP3-218ENST00000560202 NPM1P06748 294 aaKnown RBP eCLIP17.05■□□□□ 0.32
USP3-218ENST00000560202 KIF14Q15058 1648 aa17.05■□□□□ 0.32
USP3-218ENST00000560202 ABCC10Q5T3U5 1492 aa17.02■□□□□ 0.31
USP3-218ENST00000560202 FAM50AQ14320 339 aaKnown RBP17.01■□□□□ 0.31
USP3-218ENST00000560202 MIA2Q96PC5 1412 aa17.01■□□□□ 0.31
USP3-218ENST00000560202 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17■□□□□ 0.31
USP3-218ENST00000560202 KCNH8Q96L42 1107 aa17■□□□□ 0.31
USP3-218ENST00000560202 GPATCH8Q9UKJ3 1502 aaKnown RBP16.99■□□□□ 0.31
USP3-218ENST00000560202 WDR7Q9Y4E6 1490 aa16.99■□□□□ 0.31
USP3-218ENST00000560202 ASXL2Q76L83 1435 aa16.98■□□□□ 0.31
USP3-218ENST00000560202 PTPN23Q9H3S7 1636 aa16.96■□□□□ 0.31
USP3-218ENST00000560202 CFDP1Q9UEE9 299 aaPredicted RBP16.96■□□□□ 0.31
USP3-218ENST00000560202 TCOF1Q13428 1488 aaKnown RBP16.96■□□□□ 0.3
USP3-218ENST00000560202 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.95■□□□□ 0.3
USP3-218ENST00000560202 ITGAEP38570 1179 aa16.95■□□□□ 0.3
USP3-218ENST00000560202 ITSN2Q9NZM3 1697 aa16.94■□□□□ 0.3
USP3-218ENST00000560202 TTC37Q6PGP7 1564 aa16.92■□□□□ 0.3
USP3-218ENST00000560202 CDC42BPAQ5VT25 1732 aa16.91■□□□□ 0.3
USP3-218ENST00000560202 ZNF644Q9H582 1327 aaPredicted RBP16.91■□□□□ 0.3
USP3-218ENST00000560202 ZNF777Q9ULD5 760 aaPredicted RBP16.9■□□□□ 0.3
USP3-218ENST00000560202 MAPKBP1O60336 1514 aa16.89■□□□□ 0.29
USP3-218ENST00000560202 PREX2Q70Z35 1606 aa16.88■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms