RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 CUL7Q14999 1698 aa14.61□□□□□ -0.07
USP3-208ENST00000558285 CACNB1Q02641 598 aaPredicted RBP14.61□□□□□ -0.07
USP3-208ENST00000558285 NUP160Q12769 1436 aa14.6□□□□□ -0.07
USP3-208ENST00000558285 CYB5RLQ6IPT4 315 aa14.59□□□□□ -0.07
USP3-208ENST00000558285 IGF1RP08069 1367 aa14.58□□□□□ -0.08
USP3-208ENST00000558285 CARMIL1Q5VZK9 1371 aa14.54□□□□□ -0.08
USP3-208ENST00000558285 CEP170Q5SW79 1584 aa14.53□□□□□ -0.08
USP3-208ENST00000558285 ARAP1Q96P48 1450 aa14.52□□□□□ -0.09
USP3-208ENST00000558285 JPH4Q96JJ6 628 aa14.49□□□□□ -0.09
USP3-208ENST00000558285 KIAA0586Q9BVV6 1533 aa14.49□□□□□ -0.09
USP3-208ENST00000558285 PRG4Q92954 1404 aaPredicted RBP14.46□□□□□ -0.09
USP3-208ENST00000558285 RAPGEF2Q9Y4G8 1499 aa14.46□□□□□ -0.09
USP3-208ENST00000558285 SHROOM2Q13796 1616 aa14.46□□□□□ -0.1
USP3-208ENST00000558285 PLPPR3Q6T4P5 718 aa14.46□□□□□ -0.1
USP3-208ENST00000558285 EEA1Q15075 1411 aa14.45□□□□□ -0.1
USP3-208ENST00000558285 RUSC2Q8N2Y8 1516 aa14.45□□□□□ -0.1
USP3-208ENST00000558285 FAM9AQ8IZU1 332 aaPredicted RBP14.44□□□□□ -0.1
USP3-208ENST00000558285 CARMIL2Q6F5E8 1435 aa14.44□□□□□ -0.1
USP3-208ENST00000558285 NPM1P06748 294 aaKnown RBP eCLIP14.41□□□□□ -0.1
USP3-208ENST00000558285 TRHP20396 242 aaPredicted RBP14.4□□□□□ -0.1
USP3-208ENST00000558285 IQGAP2Q13576 1575 aa14.38□□□□□ -0.11
USP3-208ENST00000558285 CSRNP3Q8WYN3 585 aa14.37□□□□□ -0.11
USP3-208ENST00000558285 PTPRGP23470 1445 aa14.32□□□□□ -0.12
USP3-208ENST00000558285 GOLGA3Q08378 1498 aa14.32□□□□□ -0.12
USP3-208ENST00000558285 ERCC6L2Q5T890 1561 aa14.32□□□□□ -0.12
USP3-208ENST00000558285 PRXQ9BXM0 1461 aa14.32□□□□□ -0.12
USP3-208ENST00000558285 TNIKQ9UKE5 1360 aa14.32□□□□□ -0.12
USP3-208ENST00000558285 UGGT2Q9NYU1 1516 aa14.28□□□□□ -0.12
USP3-208ENST00000558285 CTTNBP2Q8WZ74 1663 aa14.26□□□□□ -0.13
USP3-208ENST00000558285 TTBK1Q5TCY1 1321 aaPredicted RBP14.23□□□□□ -0.13
USP3-208ENST00000558285 UACAQ9BZF9 1416 aa14.21□□□□□ -0.14
USP3-208ENST00000558285 KIAA0556O60303 1618 aa14.2□□□□□ -0.14
USP3-208ENST00000558285 DISP1Q96F81 1524 aa14.2□□□□□ -0.14
USP3-208ENST00000558285 UHRF1BP1LA0JNW5 1464 aa14.19□□□□□ -0.14
USP3-208ENST00000558285 MAPKBP1O60336 1514 aa14.19□□□□□ -0.14
USP3-208ENST00000558285 KIF21BO75037 1637 aa14.18□□□□□ -0.14
USP3-208ENST00000558285 ABCC2Q92887 1545 aa14.18□□□□□ -0.14
USP3-208ENST00000558285 ADCY10Q96PN6 1610 aa14.16□□□□□ -0.14
USP3-208ENST00000558285 UBTFP17480 764 aaKnown RBP14.15□□□□□ -0.14
USP3-208ENST00000558285 PLB1Q6P1J6 1458 aa14.15□□□□□ -0.14
USP3-208ENST00000558285 FAM69CQ0P6D2 419 aa14.13□□□□□ -0.15
USP3-208ENST00000558285 ABCC10Q5T3U5 1492 aa14.13□□□□□ -0.15
USP3-208ENST00000558285 EFCAB5A4FU69 1503 aa14.1□□□□□ -0.15
USP3-208ENST00000558285 KDM5BQ9UGL1 1544 aa14.09□□□□□ -0.15
USP3-208ENST00000558285 ASXL2Q76L83 1435 aa14.07□□□□□ -0.16
USP3-208ENST00000558285 P3H3Q8IVL6 736 aa14.07□□□□□ -0.16
USP3-208ENST00000558285 SAMD9Q5K651 1589 aa14.06□□□□□ -0.16
USP3-208ENST00000558285 RANGAP1P46060 587 aaPredicted RBP14.06□□□□□ -0.16
USP3-208ENST00000558285 DMRT2Q9Y5R5 561 aa14.06□□□□□ -0.16
USP3-208ENST00000558285 DIP2BQ9P265 1576 aa14.04□□□□□ -0.16
USP3-208ENST00000558285 ABCA8O94911 1581 aa14.04□□□□□ -0.16
USP3-208ENST00000558285 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.02□□□□□ -0.16
USP3-208ENST00000558285 HNRNPUL2Q1KMD3 747 aaKnown RBP14.02□□□□□ -0.16
USP3-208ENST00000558285 WDR7Q9Y4E6 1490 aa14.02□□□□□ -0.17
USP3-208ENST00000558285 GLI2P10070 1586 aa14.01□□□□□ -0.17
USP3-208ENST00000558285 ZCCHC11Q5TAX3 1644 aaKnown RBP14.01□□□□□ -0.17
USP3-208ENST00000558285 FMN1Q68DA7 1419 aa14.01□□□□□ -0.17
USP3-208ENST00000558285 KIF13AQ9H1H9 1805 aa14□□□□□ -0.17
USP3-208ENST00000558285 TEX14Q8IWB6 1497 aa14□□□□□ -0.17
USP3-208ENST00000558285 EHMT2Q96KQ7 1210 aa13.99□□□□□ -0.17
USP3-208ENST00000558285 RAPGEF6Q8TEU7 1601 aa13.98□□□□□ -0.17
USP3-208ENST00000558285 FHOD3Q2V2M9 1422 aa13.98□□□□□ -0.17
USP3-208ENST00000558285 EPRSP07814 1512 aaKnown RBP13.98□□□□□ -0.17
USP3-208ENST00000558285 CDK11AQ9UQ88 783 aaPredicted RBP13.96□□□□□ -0.17
USP3-208ENST00000558285 PLEKHD1A6NEE1 506 aa13.95□□□□□ -0.18
USP3-208ENST00000558285 KCNH8Q96L42 1107 aa13.94□□□□□ -0.18
USP3-208ENST00000558285 ATP10BO94823 1461 aa13.93□□□□□ -0.18
USP3-208ENST00000558285 ATP1B4Q9UN42 357 aaPredicted RBP13.92□□□□□ -0.18
USP3-208ENST00000558285 ARID3CA6NKF2 412 aa13.91□□□□□ -0.18
USP3-208ENST00000558285 CD109Q6YHK3 1445 aa13.91□□□□□ -0.18
USP3-208ENST00000558285 KDM6BO15054 1643 aa13.91□□□□□ -0.18
USP3-208ENST00000558285 PHLDB1Q86UU1 1377 aa13.9□□□□□ -0.18
USP3-208ENST00000558285 NUP153P49790 1475 aaKnown RBP13.9□□□□□ -0.18
USP3-208ENST00000558285 CFAP43Q8NDM7 1665 aa13.89□□□□□ -0.19
USP3-208ENST00000558285 ARHGAP35Q9NRY4 1499 aa13.89□□□□□ -0.19
USP3-208ENST00000558285 HECW1Q76N89 1606 aa13.89□□□□□ -0.19
USP3-208ENST00000558285 MAP3K4Q9Y6R4 1608 aa13.88□□□□□ -0.19
USP3-208ENST00000558285 TSPOAP1O95153 1857 aa13.88□□□□□ -0.19
USP3-208ENST00000558285 CLIP1P30622 1438 aa13.87□□□□□ -0.19
USP3-208ENST00000558285 MAGI3Q5TCQ9 1506 aa13.87□□□□□ -0.19
USP3-208ENST00000558285 MAPK8IP2Q13387 824 aaPredicted RBP13.85□□□□□ -0.19
USP3-208ENST00000558285 CCDC18Q5T9S5 1454 aa13.84□□□□□ -0.19
USP3-208ENST00000558285 CASKIN1Q8WXD9 1431 aa13.82□□□□□ -0.2
USP3-208ENST00000558285 ABCA9Q8IUA7 1624 aa13.81□□□□□ -0.2
USP3-208ENST00000558285 NEO1Q92859 1461 aa13.79□□□□□ -0.2
USP3-208ENST00000558285 FYCO1Q9BQS8 1478 aa13.79□□□□□ -0.2
USP3-208ENST00000558285 CFAP74Q9C0B2 1584 aa13.78□□□□□ -0.2
USP3-208ENST00000558285 PPRC1Q5VV67 1664 aaKnown RBP13.77□□□□□ -0.2
USP3-208ENST00000558285 CDK13Q14004 1512 aaKnown RBP13.76□□□□□ -0.21
USP3-208ENST00000558285 TROQ12816 1431 aaPredicted RBP13.76□□□□□ -0.21
USP3-208ENST00000558285 CEP162Q5TB80 1403 aa13.76□□□□□ -0.21
USP3-208ENST00000558285 ARAP3Q8WWN8 1544 aa13.75□□□□□ -0.21
USP3-208ENST00000558285 KIF14Q15058 1648 aa13.74□□□□□ -0.21
USP3-208ENST00000558285 EFCAB2Q5VUJ9 269 aa13.73□□□□□ -0.21
USP3-208ENST00000558285 FANCAO15360 1455 aa13.72□□□□□ -0.21
USP3-208ENST00000558285 PCF11O94913 1555 aaKnown RBP13.72□□□□□ -0.21
USP3-208ENST00000558285 RNF39Q9H2S5 420 aa13.71□□□□□ -0.21
USP3-208ENST00000558285 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.71□□□□□ -0.22
USP3-208ENST00000558285 PLCH2O75038 1416 aa13.7□□□□□ -0.22
USP3-208ENST00000558285 DENND4BO75064 1496 aaPredicted RBP13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 140.4 ms