RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 NISCHQ9Y2I1 1504 aa20.82■□□□□ 0.92
USP3-208ENST00000558285 AEBP2Q6ZN18 517 aaPredicted RBP20.73■□□□□ 0.91
USP3-208ENST00000558285 CHIC1Q5VXU3 224 aa19.48■□□□□ 0.71
USP3-208ENST00000558285 CCDC180Q9P1Z9 1646 aa18.59■□□□□ 0.57
USP3-208ENST00000558285 ABCC9O60706 1549 aa18.19■□□□□ 0.5
USP3-208ENST00000558285 SENP3Q9H4L4 574 aaPredicted RBP17.98■□□□□ 0.47
USP3-208ENST00000558285 POTEDQ86YR6 584 aa17.67■□□□□ 0.42
USP3-208ENST00000558285 RB1CC1Q8TDY2 1594 aa17.57■□□□□ 0.4
USP3-208ENST00000558285 NACADO15069 1562 aa17.54■□□□□ 0.4
USP3-208ENST00000558285 PHF23Q9BUL5 403 aaPredicted RBP17.52■□□□□ 0.4
USP3-208ENST00000558285 DCAF8L2P0C7V8 631 aa17.5■□□□□ 0.39
USP3-208ENST00000558285 MYO15BQ96JP2 1530 aa17.41■□□□□ 0.38
USP3-208ENST00000558285 ZCCHC6Q5VYS8 1495 aaKnown RBP17.31■□□□□ 0.36
USP3-208ENST00000558285 DCAF1Q9Y4B6 1507 aa17.28■□□□□ 0.36
USP3-208ENST00000558285 PABPN1Q86U42 306 aaKnown RBP eCLIP16.97■□□□□ 0.31
USP3-208ENST00000558285 UNC13AQ9UPW8 1703 aa16.94■□□□□ 0.3
USP3-208ENST00000558285 SHROOM4Q9ULL8 1493 aa16.94■□□□□ 0.3
USP3-208ENST00000558285 SCRIBQ14160 1630 aa16.88■□□□□ 0.29
USP3-208ENST00000558285 BICRAQ9NZM4 1560 aa16.86■□□□□ 0.29
USP3-208ENST00000558285 FOXD1Q16676 465 aa16.82■□□□□ 0.28
USP3-208ENST00000558285 DNAJC5BQ9UF47 199 aa16.62■□□□□ 0.25
USP3-208ENST00000558285 EIF4G1Q04637 1599 aaKnown RBP16.51■□□□□ 0.23
USP3-208ENST00000558285 CC2D2AQ9P2K1 1620 aa16.45■□□□□ 0.22
USP3-208ENST00000558285 CECR2Q9BXF3 1484 aa16.41■□□□□ 0.22
USP3-208ENST00000558285 MSH5O43196 834 aa16.25■□□□□ 0.19
USP3-208ENST00000558285 BAZ1AQ9NRL2 1556 aaPredicted RBP16.21■□□□□ 0.19
USP3-208ENST00000558285 SMARCA2P51531 1590 aa16.17■□□□□ 0.18
USP3-208ENST00000558285 SMARCA4P51532 1647 aa16.15■□□□□ 0.18
USP3-208ENST00000558285 NCAPD3P42695 1498 aa16.15■□□□□ 0.18
USP3-208ENST00000558285 ATAD2BQ9ULI0 1458 aa16.1■□□□□ 0.17
USP3-208ENST00000558285 HMGXB3Q12766 1538 aa16.07■□□□□ 0.16
USP3-208ENST00000558285 BAZ1BQ9UIG0 1483 aaKnown RBP16.03■□□□□ 0.16
USP3-208ENST00000558285 PEG3Q9GZU2 1588 aa16.02■□□□□ 0.15
USP3-208ENST00000558285 MROH2BQ7Z745 1585 aa15.97■□□□□ 0.15
USP3-208ENST00000558285 ERCC6Q03468 1493 aa15.82■□□□□ 0.12
USP3-208ENST00000558285 RSF1Q96T23 1441 aaPredicted RBP15.81■□□□□ 0.12
USP3-208ENST00000558285 WIZO95785 1651 aa15.78■□□□□ 0.12
USP3-208ENST00000558285 LAMC3Q9Y6N6 1575 aa15.75■□□□□ 0.11
USP3-208ENST00000558285 PDS5BQ9NTI5 1447 aa15.72■□□□□ 0.11
USP3-208ENST00000558285 TOP2AP11388 1531 aaKnown RBP15.71■□□□□ 0.11
USP3-208ENST00000558285 CADPSQ9ULU8 1353 aa15.69■□□□□ 0.1
USP3-208ENST00000558285 CUX2O14529 1486 aa15.67■□□□□ 0.1
USP3-208ENST00000558285 NESP48681 1621 aa15.65■□□□□ 0.1
USP3-208ENST00000558285 CFTRP13569 1480 aa15.54■□□□□ 0.08
USP3-208ENST00000558285 CEP164Q9UPV0 1460 aa15.51■□□□□ 0.07
USP3-208ENST00000558285 MRC2Q9UBG0 1479 aa15.49■□□□□ 0.07
USP3-208ENST00000558285 FANCD2Q9BXW9 1451 aa15.49■□□□□ 0.07
USP3-208ENST00000558285 CCDC88BA6NC98 1476 aa15.48■□□□□ 0.07
USP3-208ENST00000558285 PIAS4Q8N2W9 510 aaPredicted RBP15.48■□□□□ 0.07
USP3-208ENST00000558285 KIF21AQ7Z4S6 1674 aa15.47■□□□□ 0.07
USP3-208ENST00000558285 THOC2Q8NI27 1593 aaKnown RBP15.47■□□□□ 0.07
USP3-208ENST00000558285 SUPT5HO00267 1087 aaKnown RBP15.4■□□□□ 0.06
USP3-208ENST00000558285 WDR62O43379 1518 aa15.4■□□□□ 0.06
USP3-208ENST00000558285 PRDM2Q13029 1718 aa15.38■□□□□ 0.05
USP3-208ENST00000558285 ABCC8Q09428 1581 aa15.35■□□□□ 0.05
USP3-208ENST00000558285 URB2Q14146 1524 aaKnown RBP15.25■□□□□ 0.03
USP3-208ENST00000558285 DNAJC5Q9H3Z4 198 aa15.22■□□□□ 0.03
USP3-208ENST00000558285 DNMBPQ6XZF7 1577 aa15.21■□□□□ 0.03
USP3-208ENST00000558285 IFT140Q96RY7 1462 aa15.21■□□□□ 0.02
USP3-208ENST00000558285 TOPBP1Q92547 1522 aa15.2■□□□□ 0.02
USP3-208ENST00000558285 POLA1P09884 1462 aaPredicted RBP15.06■□□□□ 0
USP3-208ENST00000558285 SOGA1O94964 1423 aa15.06■□□□□ 0
USP3-208ENST00000558285 WDR97A6NE52 1622 aa15.03■□□□□ -0
USP3-208ENST00000558285 OSCARQ8IYS5 282 aa15.03■□□□□ -0
USP3-208ENST00000558285 FGD5Q6ZNL6 1462 aa15.02■□□□□ -0
USP3-208ENST00000558285 CUX1P39880 1505 aa15□□□□□ -0.01
USP3-208ENST00000558285 ZNF608Q9ULD9 1512 aaPredicted RBP14.99□□□□□ -0.01
USP3-208ENST00000558285 WRNQ14191 1432 aaPredicted RBP eCLIP14.99□□□□□ -0.01
USP3-208ENST00000558285 TARBP1Q13395 1621 aaKnown RBP14.99□□□□□ -0.01
USP3-208ENST00000558285 EIF4G3O43432 1585 aaKnown RBP14.98□□□□□ -0.01
USP3-208ENST00000558285 RAD54L2Q9Y4B4 1467 aa14.94□□□□□ -0.02
USP3-208ENST00000558285 AQRO60306 1485 aaKnown RBP eCLIP14.94□□□□□ -0.025e-8■■■□□ 17.4
USP3-208ENST00000558285 TDRD9Q8NDG6 1382 aaKnown RBP14.92□□□□□ -0.02
USP3-208ENST00000558285 GRIN2BQ13224 1484 aa14.91□□□□□ -0.02
USP3-208ENST00000558285 TOP2BQ02880 1626 aa14.91□□□□□ -0.02
USP3-208ENST00000558285 ABCA10Q8WWZ4 1543 aa14.9□□□□□ -0.02
USP3-208ENST00000558285 FBLN2P98095 1184 aa14.89□□□□□ -0.03
USP3-208ENST00000558285 MAGI1Q96QZ7 1491 aaPredicted RBP14.89□□□□□ -0.03
USP3-208ENST00000558285 BIVM-ERCC5R4GMW8 1640 aa14.89□□□□□ -0.03
USP3-208ENST00000558285 GAPVD1Q14C86 1478 aa14.87□□□□□ -0.03
USP3-208ENST00000558285 CHMP7Q8WUX9 453 aaPredicted RBP14.87□□□□□ -0.03
USP3-208ENST00000558285 SNAPC4Q5SXM2 1469 aa14.84□□□□□ -0.03
USP3-208ENST00000558285 SYNJ1O43426 1573 aa14.83□□□□□ -0.04
USP3-208ENST00000558285 PPP6R1Q9UPN7 881 aa14.81□□□□□ -0.04
USP3-208ENST00000558285 SYNJ2O15056 1496 aa14.81□□□□□ -0.04
USP3-208ENST00000558285 ABCA5Q8WWZ7 1642 aa14.79□□□□□ -0.04
USP3-208ENST00000558285 PBRM1Q86U86 1689 aa14.77□□□□□ -0.05
USP3-208ENST00000558285 CHD1O14646 1710 aa14.76□□□□□ -0.05
USP3-208ENST00000558285 ERICH3Q5RHP9 1530 aa14.75□□□□□ -0.05
USP3-208ENST00000558285 ADRA2BP18089 450 aa14.74□□□□□ -0.05
USP3-208ENST00000558285 KIF27Q86VH2 1401 aa14.73□□□□□ -0.05
USP3-208ENST00000558285 FHAD1B1AJZ9 1412 aa14.73□□□□□ -0.05
USP3-208ENST00000558285 TRIM41Q8WV44 630 aa14.7□□□□□ -0.06
USP3-208ENST00000558285 ADAMTS12P58397 1594 aa14.68□□□□□ -0.06
USP3-208ENST00000558285 ARHGEF11O15085 1522 aa14.68□□□□□ -0.06
USP3-208ENST00000558285 GRIN2AQ12879 1464 aa14.68□□□□□ -0.06
USP3-208ENST00000558285 RIMBP3CA6NJZ7 1639 aa14.64□□□□□ -0.07
USP3-208ENST00000558285 RIMBP3BA6NNM3 1639 aa14.64□□□□□ -0.07
USP3-208ENST00000558285 RIMBP3Q9UFD9 1639 aa14.64□□□□□ -0.07
USP3-208ENST00000558285 CLASP1Q7Z460 1538 aa14.64□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 83.3 ms