RNA–Protein interactions for RNA: ENST00000557033.1

HNRNPC-228, Transcript of heterogeneous nuclear ribonucleoprotein C (C1/C2), humanhuman

TSL 3

Gene HNRNPC, Length 760 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HNRNPC-228ENST00000557033 CHD1O14646 1710 aa17.25■□□□□ 0.35
HNRNPC-228ENST00000557033 GRIN2BQ13224 1484 aa17.24■□□□□ 0.35
HNRNPC-228ENST00000557033 MAGI1Q96QZ7 1491 aaPredicted RBP17.23■□□□□ 0.35
HNRNPC-228ENST00000557033 ABCA10Q8WWZ4 1543 aa17.22■□□□□ 0.35
HNRNPC-228ENST00000557033 SAMD1Q6SPF0 538 aaPredicted RBP17.22■□□□□ 0.35
HNRNPC-228ENST00000557033 CHMP7Q8WUX9 453 aaPredicted RBP17.22■□□□□ 0.35
HNRNPC-228ENST00000557033 SNAPC4Q5SXM2 1469 aa17.22■□□□□ 0.35
HNRNPC-228ENST00000557033 WRNQ14191 1432 aaPredicted RBP eCLIP17.21■□□□□ 0.35
HNRNPC-228ENST00000557033 GAPVD1Q14C86 1478 aa17.21■□□□□ 0.35
HNRNPC-228ENST00000557033 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.21■□□□□ 0.35
HNRNPC-228ENST00000557033 HNRNPUL2Q1KMD3 747 aaKnown RBP17.21■□□□□ 0.35
HNRNPC-228ENST00000557033 RIMBP3CA6NJZ7 1639 aa17.21■□□□□ 0.35
HNRNPC-228ENST00000557033 RIMBP3BA6NNM3 1639 aa17.21■□□□□ 0.35
HNRNPC-228ENST00000557033 RIMBP3Q9UFD9 1639 aa17.21■□□□□ 0.35
HNRNPC-228ENST00000557033 FBXO3Q9UK99 471 aa17.2■□□□□ 0.34
HNRNPC-228ENST00000557033 TOP2BQ02880 1626 aa17.19■□□□□ 0.34
HNRNPC-228ENST00000557033 BIVM-ERCC5R4GMW8 1640 aa17.18■□□□□ 0.34
HNRNPC-228ENST00000557033 ARHGEF11O15085 1522 aa17.18■□□□□ 0.34
HNRNPC-228ENST00000557033 SYNJ2O15056 1496 aa17.16■□□□□ 0.34
HNRNPC-228ENST00000557033 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.15■□□□□ 0.343e-23■□□□□ 9
HNRNPC-228ENST00000557033 SYNJ1O43426 1573 aa17.15■□□□□ 0.34
HNRNPC-228ENST00000557033 ABCA5Q8WWZ7 1642 aa17.14■□□□□ 0.33
HNRNPC-228ENST00000557033 PBRM1Q86U86 1689 aa17.14■□□□□ 0.33
HNRNPC-228ENST00000557033 CYB5RLQ6IPT4 315 aa17.09■□□□□ 0.33
HNRNPC-228ENST00000557033 CLASP1Q7Z460 1538 aa17.08■□□□□ 0.32
HNRNPC-228ENST00000557033 HAP1P54257 671 aaPredicted RBP17.08■□□□□ 0.32
HNRNPC-228ENST00000557033 U3KPZ7 1027 aaPredicted RBP17.05■□□□□ 0.32
HNRNPC-228ENST00000557033 ERICH3Q5RHP9 1530 aa17.02■□□□□ 0.32
HNRNPC-228ENST00000557033 ARAP1Q96P48 1450 aa17.01■□□□□ 0.31
HNRNPC-228ENST00000557033 BCANQ96GW7 911 aa17.01■□□□□ 0.31
HNRNPC-228ENST00000557033 ZNF219Q9P2Y4 722 aaPredicted RBP17.01■□□□□ 0.31
HNRNPC-228ENST00000557033 FHAD1B1AJZ9 1412 aa17.01■□□□□ 0.31
HNRNPC-228ENST00000557033 GRIN2AQ12879 1464 aa17■□□□□ 0.31
HNRNPC-228ENST00000557033 ADAMTS12P58397 1594 aa16.99■□□□□ 0.31
HNRNPC-228ENST00000557033 DCAF8L1A6NGE4 600 aa16.99■□□□□ 0.31
HNRNPC-228ENST00000557033 SPDYE4A6NLX3 237 aa16.98■□□□□ 0.31
HNRNPC-228ENST00000557033 NUP160Q12769 1436 aa16.95■□□□□ 0.3
HNRNPC-228ENST00000557033 PRKCSHP14314 528 aaPredicted RBP16.94■□□□□ 0.3
HNRNPC-228ENST00000557033 VASPP50552 380 aaPredicted RBP16.93■□□□□ 0.3
HNRNPC-228ENST00000557033 PROM2Q8N271 834 aa16.92■□□□□ 0.3
HNRNPC-228ENST00000557033 VSIG10Q8N0Z9 540 aa16.91■□□□□ 0.3
HNRNPC-228ENST00000557033 CEP170Q5SW79 1584 aa16.9■□□□□ 0.3
HNRNPC-228ENST00000557033 KIF27Q86VH2 1401 aa16.9■□□□□ 0.3
HNRNPC-228ENST00000557033 IGF1RP08069 1367 aa16.87■□□□□ 0.29
HNRNPC-228ENST00000557033 IFNLR1Q8IU57 520 aaPredicted RBP16.86■□□□□ 0.29
HNRNPC-228ENST00000557033 TAOK2Q9UL54 1235 aa16.86■□□□□ 0.29
HNRNPC-228ENST00000557033 SHROOM2Q13796 1616 aa16.84■□□□□ 0.29
HNRNPC-228ENST00000557033 TRHP20396 242 aaPredicted RBP16.83■□□□□ 0.28
HNRNPC-228ENST00000557033 JPH4Q96JJ6 628 aa16.83■□□□□ 0.28
HNRNPC-228ENST00000557033 CUL7Q14999 1698 aa16.8■□□□□ 0.28
HNRNPC-228ENST00000557033 ERCC6L2Q5T890 1561 aa16.8■□□□□ 0.28
HNRNPC-228ENST00000557033 PKD2Q13563 968 aa16.79■□□□□ 0.28
HNRNPC-228ENST00000557033 MKRN4PQ13434 485 aaPredicted RBP16.78■□□□□ 0.28
HNRNPC-228ENST00000557033 PRG4Q92954 1404 aaPredicted RBP16.77■□□□□ 0.27
HNRNPC-228ENST00000557033 CARMIL1Q5VZK9 1371 aa16.76■□□□□ 0.27
HNRNPC-228ENST00000557033 KIAA0586Q9BVV6 1533 aa16.75■□□□□ 0.27
HNRNPC-228ENST00000557033 RUSC2Q8N2Y8 1516 aa16.74■□□□□ 0.27
HNRNPC-228ENST00000557033 APLP2Q06481 763 aa16.7■□□□□ 0.26
HNRNPC-228ENST00000557033 RAPGEF2Q9Y4G8 1499 aa16.62■□□□□ 0.25
HNRNPC-228ENST00000557033 KDM2AQ9Y2K7 1162 aa16.62■□□□□ 0.25
HNRNPC-228ENST00000557033 NPM1P06748 294 aaKnown RBP eCLIP16.61■□□□□ 0.25
HNRNPC-228ENST00000557033 BBXQ8WY36 941 aaPredicted RBP16.59■□□□□ 0.25
HNRNPC-228ENST00000557033 CARMIL2Q6F5E8 1435 aa16.59■□□□□ 0.25
HNRNPC-228ENST00000557033 IQGAP2Q13576 1575 aa16.57■□□□□ 0.24
HNRNPC-228ENST00000557033 TPRNQ4KMQ1 711 aa16.57■□□□□ 0.24
HNRNPC-228ENST00000557033 PTPRGP23470 1445 aa16.56■□□□□ 0.24
HNRNPC-228ENST00000557033 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.56■□□□□ 0.24
HNRNPC-228ENST00000557033 TNIKQ9UKE5 1360 aa16.54■□□□□ 0.24
HNRNPC-228ENST00000557033 ADCY10Q96PN6 1610 aa16.52■□□□□ 0.23
HNRNPC-228ENST00000557033 MAPKBP1O60336 1514 aa16.5■□□□□ 0.23
HNRNPC-228ENST00000557033 UGGT2Q9NYU1 1516 aa16.5■□□□□ 0.23
HNRNPC-228ENST00000557033 DISP1Q96F81 1524 aa16.49■□□□□ 0.23
HNRNPC-228ENST00000557033 PRXQ9BXM0 1461 aa16.48■□□□□ 0.23
HNRNPC-228ENST00000557033 PAXIP1Q6ZW49 1069 aaPredicted RBP16.47■□□□□ 0.23
HNRNPC-228ENST00000557033 ABCC10Q5T3U5 1492 aa16.47■□□□□ 0.23
HNRNPC-228ENST00000557033 KIF13AQ9H1H9 1805 aa16.47■□□□□ 0.23
HNRNPC-228ENST00000557033 TTBK1Q5TCY1 1321 aaPredicted RBP16.46■□□□□ 0.23
HNRNPC-228ENST00000557033 FAM69CQ0P6D2 419 aa16.46■□□□□ 0.23
HNRNPC-228ENST00000557033 UHRF1BP1LA0JNW5 1464 aa16.44■□□□□ 0.22
HNRNPC-228ENST00000557033 CTTNBP2Q8WZ74 1663 aa16.43■□□□□ 0.22
HNRNPC-228ENST00000557033 UACAQ9BZF9 1416 aa16.43■□□□□ 0.22
HNRNPC-228ENST00000557033 ABCC2Q92887 1545 aa16.42■□□□□ 0.22
HNRNPC-228ENST00000557033 CFAP44Q96MT7 982 aa16.41■□□□□ 0.22
HNRNPC-228ENST00000557033 EEA1Q15075 1411 aa16.41■□□□□ 0.22
HNRNPC-228ENST00000557033 GOLGA3Q08378 1498 aa16.41■□□□□ 0.22
HNRNPC-228ENST00000557033 KIAA0556O60303 1618 aa16.41■□□□□ 0.22
HNRNPC-228ENST00000557033 ECM2O94769 699 aaPredicted RBP16.4■□□□□ 0.22
HNRNPC-228ENST00000557033 SPOCK2Q92563 424 aa16.4■□□□□ 0.22
HNRNPC-228ENST00000557033 DIP2BQ9P265 1576 aa16.39■□□□□ 0.21
HNRNPC-228ENST00000557033 PLB1Q6P1J6 1458 aa16.36■□□□□ 0.21
HNRNPC-228ENST00000557033 FAM9AQ8IZU1 332 aaPredicted RBP16.35■□□□□ 0.21
HNRNPC-228ENST00000557033 KDM5BQ9UGL1 1544 aa16.35■□□□□ 0.21
HNRNPC-228ENST00000557033 KLHL34Q8N239 644 aa16.34■□□□□ 0.21
HNRNPC-228ENST00000557033 ASXL2Q76L83 1435 aa16.34■□□□□ 0.21
HNRNPC-228ENST00000557033 POLA2Q14181 598 aa16.33■□□□□ 0.2
HNRNPC-228ENST00000557033 GLI2P10070 1586 aa16.3■□□□□ 0.2
HNRNPC-228ENST00000557033 SPRYD3Q8NCJ5 442 aa16.29■□□□□ 0.2
HNRNPC-228ENST00000557033 ZCCHC11Q5TAX3 1644 aaKnown RBP16.27■□□□□ 0.2
HNRNPC-228ENST00000557033 TSHZ2Q9NRE2 1034 aa16.27■□□□□ 0.2
HNRNPC-228ENST00000557033 ABCA8O94911 1581 aa16.26■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms