RNA–Protein interactions for RNA: ENST00000557033.1

HNRNPC-228, Transcript of heterogeneous nuclear ribonucleoprotein C (C1/C2), humanhuman

TSL 3

Gene HNRNPC, Length 760 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HNRNPC-228ENST00000557033 CHIC1Q5VXU3 224 aa27■■□□□ 1.91
HNRNPC-228ENST00000557033 AEBP2Q6ZN18 517 aaPredicted RBP26.4■■□□□ 1.82
HNRNPC-228ENST00000557033 NISCHQ9Y2I1 1504 aa24.09■■□□□ 1.45
HNRNPC-228ENST00000557033 PHF23Q9BUL5 403 aaPredicted RBP23.94■■□□□ 1.42
HNRNPC-228ENST00000557033 PLPPR3Q6T4P5 718 aa22.46■■□□□ 1.19
HNRNPC-228ENST00000557033 SENP3Q9H4L4 574 aaPredicted RBP22.12■■□□□ 1.13
HNRNPC-228ENST00000557033 CCDC180Q9P1Z9 1646 aa21.51■■□□□ 1.03
HNRNPC-228ENST00000557033 ABCC9O60706 1549 aa21.28■■□□□ 1
HNRNPC-228ENST00000557033 EHMT2Q96KQ7 1210 aa21.06■□□□□ 0.96
HNRNPC-228ENST00000557033 ADRA2BP18089 450 aa21.05■□□□□ 0.96
HNRNPC-228ENST00000557033 KCNA4P22459 653 aa20.98■□□□□ 0.95
HNRNPC-228ENST00000557033 PPP6R1Q9UPN7 881 aa20.71■□□□□ 0.91
HNRNPC-228ENST00000557033 FOXD1Q16676 465 aa20.43■□□□□ 0.86
HNRNPC-228ENST00000557033 RB1CC1Q8TDY2 1594 aa20.39■□□□□ 0.85
HNRNPC-228ENST00000557033 NACADO15069 1562 aa20.32■□□□□ 0.84
HNRNPC-228ENST00000557033 CSRNP3Q8WYN3 585 aa20.3■□□□□ 0.84
HNRNPC-228ENST00000557033 DCAF8L2P0C7V8 631 aa20.26■□□□□ 0.83
HNRNPC-228ENST00000557033 SLC4A1APQ9BWU0 796 aaKnown RBP20.18■□□□□ 0.82
HNRNPC-228ENST00000557033 MYO15BQ96JP2 1530 aa20.14■□□□□ 0.81
HNRNPC-228ENST00000557033 PPP4R3CPQ6ZMV5 832 aa19.98■□□□□ 0.79
HNRNPC-228ENST00000557033 ZCCHC6Q5VYS8 1495 aaKnown RBP19.98■□□□□ 0.79
HNRNPC-228ENST00000557033 DCAF1Q9Y4B6 1507 aa19.94■□□□□ 0.78
HNRNPC-228ENST00000557033 UNC13AQ9UPW8 1703 aa19.88■□□□□ 0.77
HNRNPC-228ENST00000557033 PABPN1Q86U42 306 aaKnown RBP eCLIP19.87■□□□□ 0.77
HNRNPC-228ENST00000557033 DNAJC5BQ9UF47 199 aa19.8■□□□□ 0.76
HNRNPC-228ENST00000557033 NCBP3Q53F19 620 aaKnown RBP19.78■□□□□ 0.76
HNRNPC-228ENST00000557033 BICRAQ9NZM4 1560 aa19.75■□□□□ 0.75
HNRNPC-228ENST00000557033 SHROOM4Q9ULL8 1493 aa19.57■□□□□ 0.72
HNRNPC-228ENST00000557033 SCRIBQ14160 1630 aa19.56■□□□□ 0.72
HNRNPC-228ENST00000557033 NPM3O75607 178 aaKnown RBP19.54■□□□□ 0.72
HNRNPC-228ENST00000557033 PIAS4Q8N2W9 510 aaPredicted RBP19.52■□□□□ 0.72
HNRNPC-228ENST00000557033 ZBTB22O15209 634 aa19.34■□□□□ 0.69
HNRNPC-228ENST00000557033 EIF4G1Q04637 1599 aaKnown RBP19.27■□□□□ 0.67
HNRNPC-228ENST00000557033 CC2D2AQ9P2K1 1620 aa19.25■□□□□ 0.67
HNRNPC-228ENST00000557033 CECR2Q9BXF3 1484 aa19.17■□□□□ 0.66
HNRNPC-228ENST00000557033 CNKSR2Q8WXI2 1034 aa19.12■□□□□ 0.65
HNRNPC-228ENST00000557033 SLC24A1O60721 1099 aa19.1■□□□□ 0.65
HNRNPC-228ENST00000557033 FOXD4L1Q9NU39 408 aa18.91■□□□□ 0.62
HNRNPC-228ENST00000557033 SCAF1Q9H7N4 1312 aaKnown RBP18.9■□□□□ 0.62
HNRNPC-228ENST00000557033 RTN4Q9NQC3 1192 aaKnown RBP18.88■□□□□ 0.61
HNRNPC-228ENST00000557033 AMER1Q5JTC6 1135 aaPredicted RBP18.83■□□□□ 0.6
HNRNPC-228ENST00000557033 NCAPD3P42695 1498 aa18.77■□□□□ 0.59
HNRNPC-228ENST00000557033 SMARCA4P51532 1647 aa18.71■□□□□ 0.59
HNRNPC-228ENST00000557033 ATAD2BQ9ULI0 1458 aa18.71■□□□□ 0.59
HNRNPC-228ENST00000557033 BAZ1AQ9NRL2 1556 aaPredicted RBP18.69■□□□□ 0.58
HNRNPC-228ENST00000557033 SMARCA2P51531 1590 aa18.68■□□□□ 0.58
HNRNPC-228ENST00000557033 HMGXB3Q12766 1538 aa18.6■□□□□ 0.57
HNRNPC-228ENST00000557033 PEG3Q9GZU2 1588 aa18.56■□□□□ 0.56
HNRNPC-228ENST00000557033 MROH2BQ7Z745 1585 aa18.53■□□□□ 0.56
HNRNPC-228ENST00000557033 BAZ1BQ9UIG0 1483 aaKnown RBP18.52■□□□□ 0.56
HNRNPC-228ENST00000557033 MAPK8IP2Q13387 824 aaPredicted RBP18.45■□□□□ 0.54
HNRNPC-228ENST00000557033 RNF216Q9NWF9 866 aaPredicted RBP18.44■□□□□ 0.54
HNRNPC-228ENST00000557033 ERCC6Q03468 1493 aa18.38■□□□□ 0.53
HNRNPC-228ENST00000557033 NESP48681 1621 aa18.33■□□□□ 0.52
HNRNPC-228ENST00000557033 WIZO95785 1651 aa18.31■□□□□ 0.52
HNRNPC-228ENST00000557033 CUX2O14529 1486 aa18.3■□□□□ 0.52
HNRNPC-228ENST00000557033 LAMC3Q9Y6N6 1575 aa18.3■□□□□ 0.52
HNRNPC-228ENST00000557033 MSH5O43196 834 aa18.27■□□□□ 0.52
HNRNPC-228ENST00000557033 RSF1Q96T23 1441 aaPredicted RBP18.25■□□□□ 0.51
HNRNPC-228ENST00000557033 FKBP8Q14318 412 aa18.22■□□□□ 0.51
HNRNPC-228ENST00000557033 CADPSQ9ULU8 1353 aa18.2■□□□□ 0.5
HNRNPC-228ENST00000557033 PDS5BQ9NTI5 1447 aa18.2■□□□□ 0.5
HNRNPC-228ENST00000557033 SLC4A2P04920 1241 aa18.17■□□□□ 0.5
HNRNPC-228ENST00000557033 ATXN8OSP0DMR3 200 aa18.15■□□□□ 0.5
HNRNPC-228ENST00000557033 TOP2AP11388 1531 aaKnown RBP18.11■□□□□ 0.49
HNRNPC-228ENST00000557033 KIF21AQ7Z4S6 1674 aa18.09■□□□□ 0.49
HNRNPC-228ENST00000557033 THOC2Q8NI27 1593 aaKnown RBP18.09■□□□□ 0.49
HNRNPC-228ENST00000557033 DNAJC5Q9H3Z4 198 aa18.09■□□□□ 0.49
HNRNPC-228ENST00000557033 HOXD11P31277 338 aaPredicted RBP18.04■□□□□ 0.48
HNRNPC-228ENST00000557033 CFTRP13569 1480 aa18.02■□□□□ 0.48
HNRNPC-228ENST00000557033 MRC2Q9UBG0 1479 aa17.99■□□□□ 0.47
HNRNPC-228ENST00000557033 MYCNP04198 464 aaPredicted RBP17.98■□□□□ 0.47
HNRNPC-228ENST00000557033 FANCD2Q9BXW9 1451 aa17.96■□□□□ 0.47
HNRNPC-228ENST00000557033 CEP164Q9UPV0 1460 aa17.95■□□□□ 0.46
HNRNPC-228ENST00000557033 WDR62O43379 1518 aa17.93■□□□□ 0.46
HNRNPC-228ENST00000557033 CCDC88BA6NC98 1476 aa17.92■□□□□ 0.46
HNRNPC-228ENST00000557033 DMRT2Q9Y5R5 561 aa17.89■□□□□ 0.45
HNRNPC-228ENST00000557033 PRDM2Q13029 1718 aa17.83■□□□□ 0.44
HNRNPC-228ENST00000557033 URB2Q14146 1524 aaKnown RBP17.77■□□□□ 0.44
HNRNPC-228ENST00000557033 ABCC8Q09428 1581 aa17.7■□□□□ 0.42
HNRNPC-228ENST00000557033 TOPBP1Q92547 1522 aa17.63■□□□□ 0.41
HNRNPC-228ENST00000557033 IFT140Q96RY7 1462 aa17.62■□□□□ 0.41
HNRNPC-228ENST00000557033 DNMBPQ6XZF7 1577 aa17.59■□□□□ 0.41
HNRNPC-228ENST00000557033 SUPT5HO00267 1087 aaKnown RBP17.59■□□□□ 0.41
HNRNPC-228ENST00000557033 OSCARQ8IYS5 282 aa17.56■□□□□ 0.4
HNRNPC-228ENST00000557033 ZNF608Q9ULD9 1512 aaPredicted RBP17.52■□□□□ 0.39
HNRNPC-228ENST00000557033 ATF5Q9Y2D1 282 aaPredicted RBP17.48■□□□□ 0.39
HNRNPC-228ENST00000557033 POLA1P09884 1462 aaPredicted RBP17.46■□□□□ 0.39
HNRNPC-228ENST00000557033 TARBP1Q13395 1621 aaKnown RBP17.46■□□□□ 0.39
HNRNPC-228ENST00000557033 SOGA1O94964 1423 aa17.43■□□□□ 0.38
HNRNPC-228ENST00000557033 EIF4G3O43432 1585 aaKnown RBP17.42■□□□□ 0.38
HNRNPC-228ENST00000557033 AQRO60306 1485 aaKnown RBP eCLIP17.41■□□□□ 0.386e-12■■■■■ 27.1
HNRNPC-228ENST00000557033 RAD54L2Q9Y4B4 1467 aa17.39■□□□□ 0.37
HNRNPC-228ENST00000557033 CUX1P39880 1505 aa17.39■□□□□ 0.37
HNRNPC-228ENST00000557033 FGD5Q6ZNL6 1462 aa17.38■□□□□ 0.37
HNRNPC-228ENST00000557033 PLCB2Q00722 1185 aa17.35■□□□□ 0.37
HNRNPC-228ENST00000557033 WDR97A6NE52 1622 aa17.35■□□□□ 0.37
HNRNPC-228ENST00000557033 TDRD9Q8NDG6 1382 aaKnown RBP17.34■□□□□ 0.37
HNRNPC-228ENST00000557033 TRIM41Q8WV44 630 aa17.32■□□□□ 0.36
HNRNPC-228ENST00000557033 FBLN2P98095 1184 aa17.27■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms