RNA–Protein interactions for RNA: ENST00000555259.5

SCFD1-215, Transcript of sec1 family domain containing 1, humanhuman

TSL 1 (best)

Gene SCFD1, Length 1,553 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-215ENST00000555259 MAPKBP1O60336 1514 aa17.62■□□□□ 0.41
SCFD1-215ENST00000555259 DIP2BQ9P265 1576 aa17.61■□□□□ 0.41
SCFD1-215ENST00000555259 TOP2BQ02880 1626 aa17.6■□□□□ 0.41
SCFD1-215ENST00000555259 NPM1P06748 294 aaKnown RBP eCLIP17.6■□□□□ 0.41
SCFD1-215ENST00000555259 BIVM-ERCC5R4GMW8 1640 aa17.59■□□□□ 0.41
SCFD1-215ENST00000555259 ILDR1Q86SU0 546 aaPredicted RBP17.58■□□□□ 0.41
SCFD1-215ENST00000555259 KDM6BO15054 1643 aa17.58■□□□□ 0.4
SCFD1-215ENST00000555259 RUSC2Q8N2Y8 1516 aa17.56■□□□□ 0.4
SCFD1-215ENST00000555259 ADCY10Q96PN6 1610 aa17.55■□□□□ 0.4
SCFD1-215ENST00000555259 CHIC1Q5VXU3 224 aa17.51■□□□□ 0.39
SCFD1-215ENST00000555259 TSPOAP1O95153 1857 aa17.48■□□□□ 0.39
SCFD1-215ENST00000555259 KIAA0586Q9BVV6 1533 aa17.41■□□□□ 0.38
SCFD1-215ENST00000555259 SUPT5HO00267 1087 aaKnown RBP17.41■□□□□ 0.38
SCFD1-215ENST00000555259 ADGRL1O94910 1474 aa17.37■□□□□ 0.37
SCFD1-215ENST00000555259 PTPRGP23470 1445 aa17.35■□□□□ 0.37
SCFD1-215ENST00000555259 PPRC1Q5VV67 1664 aaKnown RBP17.33■□□□□ 0.36
SCFD1-215ENST00000555259 ABCC2Q92887 1545 aa17.33■□□□□ 0.36
SCFD1-215ENST00000555259 IGF1RP08069 1367 aa17.32■□□□□ 0.36
SCFD1-215ENST00000555259 GLI2P10070 1586 aa17.31■□□□□ 0.36
SCFD1-215ENST00000555259 ASXL2Q76L83 1435 aa17.31■□□□□ 0.36
SCFD1-215ENST00000555259 PLB1Q6P1J6 1458 aa17.31■□□□□ 0.36
SCFD1-215ENST00000555259 TTBK1Q5TCY1 1321 aaPredicted RBP17.3■□□□□ 0.36
SCFD1-215ENST00000555259 HECW2Q9P2P5 1572 aa17.28■□□□□ 0.36
SCFD1-215ENST00000555259 TNIKQ9UKE5 1360 aa17.28■□□□□ 0.36
SCFD1-215ENST00000555259 CUL7Q14999 1698 aa17.28■□□□□ 0.36
SCFD1-215ENST00000555259 COL17A1Q9UMD9 1497 aaPredicted RBP17.27■□□□□ 0.36
SCFD1-215ENST00000555259 CARMIL2Q6F5E8 1435 aa17.25■□□□□ 0.35
SCFD1-215ENST00000555259 KIF27Q86VH2 1401 aa17.25■□□□□ 0.35
SCFD1-215ENST00000555259 UHRF1BP1LA0JNW5 1464 aa17.24■□□□□ 0.35
SCFD1-215ENST00000555259 EPRSP07814 1512 aaKnown RBP17.2■□□□□ 0.34
SCFD1-215ENST00000555259 UACAQ9BZF9 1416 aa17.2■□□□□ 0.34
SCFD1-215ENST00000555259 MAP3K4Q9Y6R4 1608 aa17.2■□□□□ 0.34
SCFD1-215ENST00000555259 TEX14Q8IWB6 1497 aa17.19■□□□□ 0.34
SCFD1-215ENST00000555259 CARMIL1Q5VZK9 1371 aa17.18■□□□□ 0.34
SCFD1-215ENST00000555259 IQGAP2Q13576 1575 aa17.17■□□□□ 0.34
SCFD1-215ENST00000555259 KDM5BQ9UGL1 1544 aa17.16■□□□□ 0.34
SCFD1-215ENST00000555259 DISP1Q96F81 1524 aa17.14■□□□□ 0.33
SCFD1-215ENST00000555259 ZCCHC11Q5TAX3 1644 aaKnown RBP17.11■□□□□ 0.33
SCFD1-215ENST00000555259 WDR7Q9Y4E6 1490 aa17.07■□□□□ 0.32
SCFD1-215ENST00000555259 FBXO41Q8TF61 875 aa17.06■□□□□ 0.32
SCFD1-215ENST00000555259 UGGT2Q9NYU1 1516 aa17.05■□□□□ 0.32
SCFD1-215ENST00000555259 KIAA0556O60303 1618 aa17.02■□□□□ 0.32
SCFD1-215ENST00000555259 MAGI3Q5TCQ9 1506 aa17.02■□□□□ 0.32
SCFD1-215ENST00000555259 CD109Q6YHK3 1445 aa17.01■□□□□ 0.31
SCFD1-215ENST00000555259 CFAP43Q8NDM7 1665 aa16.98■□□□□ 0.31
SCFD1-215ENST00000555259 KIF21BO75037 1637 aa16.98■□□□□ 0.31
SCFD1-215ENST00000555259 RAPGEF2Q9Y4G8 1499 aa16.97■□□□□ 0.31
SCFD1-215ENST00000555259 KCNH8Q96L42 1107 aa16.96■□□□□ 0.31
SCFD1-215ENST00000555259 ABCA8O94911 1581 aa16.9■□□□□ 0.3
SCFD1-215ENST00000555259 ARAP3Q8WWN8 1544 aa16.9■□□□□ 0.3
SCFD1-215ENST00000555259 PTPRMP28827 1452 aa16.9■□□□□ 0.3
SCFD1-215ENST00000555259 ADAMTSL3P82987 1691 aa16.87■□□□□ 0.29
SCFD1-215ENST00000555259 GOLGA3Q08378 1498 aa16.86■□□□□ 0.29
SCFD1-215ENST00000555259 CTTNBP2Q8WZ74 1663 aa16.83■□□□□ 0.28
SCFD1-215ENST00000555259 PCF11O94913 1555 aaKnown RBP16.82■□□□□ 0.28
SCFD1-215ENST00000555259 LMTK3Q96Q04 1460 aa16.81■□□□□ 0.28
SCFD1-215ENST00000555259 PHLDB1Q86UU1 1377 aa16.81■□□□□ 0.28
SCFD1-215ENST00000555259 RAPGEF3O95398 923 aa16.8■□□□□ 0.28
SCFD1-215ENST00000555259 BCORL1Q5H9F3 1711 aa16.78■□□□□ 0.28
SCFD1-215ENST00000555259 ABCA9Q8IUA7 1624 aa16.77■□□□□ 0.28
SCFD1-215ENST00000555259 MADDQ8WXG6 1647 aa16.77■□□□□ 0.28
SCFD1-215ENST00000555259 ARID3CA6NKF2 412 aa16.77■□□□□ 0.28
SCFD1-215ENST00000555259 ATP10BO94823 1461 aa16.77■□□□□ 0.27
SCFD1-215ENST00000555259 ARID4BQ4LE39 1312 aaPredicted RBP16.75■□□□□ 0.27
SCFD1-215ENST00000555259 NEO1Q92859 1461 aa16.75■□□□□ 0.27
SCFD1-215ENST00000555259 FRMPD1Q5SYB0 1578 aa16.73■□□□□ 0.27
SCFD1-215ENST00000555259 FAM9AQ8IZU1 332 aaPredicted RBP16.7■□□□□ 0.26
SCFD1-215ENST00000555259 HSPA2P54652 639 aa16.69■□□□□ 0.26
SCFD1-215ENST00000555259 RIMS1Q86UR5 1692 aaKnown RBP16.69■□□□□ 0.26
SCFD1-215ENST00000555259 PRXQ9BXM0 1461 aa16.68■□□□□ 0.26
SCFD1-215ENST00000555259 P3H3Q8IVL6 736 aa16.68■□□□□ 0.26
SCFD1-215ENST00000555259 ARHGEF40Q8TER5 1519 aa16.67■□□□□ 0.26
SCFD1-215ENST00000555259 CERKQ8TCT0 537 aa16.66■□□□□ 0.26
SCFD1-215ENST00000555259 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.62■□□□□ 0.25
SCFD1-215ENST00000555259 HNRNPUL2Q1KMD3 747 aaKnown RBP16.62■□□□□ 0.25
SCFD1-215ENST00000555259 PLPPR3Q6T4P5 718 aa16.62■□□□□ 0.25
SCFD1-215ENST00000555259 DENND4BO75064 1496 aaPredicted RBP16.62■□□□□ 0.25
SCFD1-215ENST00000555259 RICTORQ6R327 1708 aa16.62■□□□□ 0.25
SCFD1-215ENST00000555259 RAPGEF6Q8TEU7 1601 aa16.62■□□□□ 0.25
SCFD1-215ENST00000555259 FHOD3Q2V2M9 1422 aa16.6■□□□□ 0.25
SCFD1-215ENST00000555259 POGZQ7Z3K3 1410 aa16.6■□□□□ 0.25
SCFD1-215ENST00000555259 FANCAO15360 1455 aa16.59■□□□□ 0.25
SCFD1-215ENST00000555259 AKNAQ7Z591 1439 aa16.59■□□□□ 0.25
SCFD1-215ENST00000555259 SAMD9Q5K651 1589 aa16.59■□□□□ 0.25
SCFD1-215ENST00000555259 ILDR2Q71H61 639 aa16.58■□□□□ 0.24
SCFD1-215ENST00000555259 NUP153P49790 1475 aaKnown RBP16.58■□□□□ 0.24
SCFD1-215ENST00000555259 DISP3Q9P2K9 1392 aa16.57■□□□□ 0.24
SCFD1-215ENST00000555259 SOCS7O14512 581 aa16.56■□□□□ 0.24
SCFD1-215ENST00000555259 SIGLEC1Q9BZZ2 1709 aa16.56■□□□□ 0.24
SCFD1-215ENST00000555259 ZMYM4Q5VZL5 1548 aa16.56■□□□□ 0.24
SCFD1-215ENST00000555259 YEATS2Q9ULM3 1422 aa16.55■□□□□ 0.24
SCFD1-215ENST00000555259 ZFYVE16Q7Z3T8 1539 aa16.55■□□□□ 0.24
SCFD1-215ENST00000555259 CFAP74Q9C0B2 1584 aa16.54■□□□□ 0.24
SCFD1-215ENST00000555259 EFCAB5A4FU69 1503 aa16.53■□□□□ 0.24
SCFD1-215ENST00000555259 TTC37Q6PGP7 1564 aa16.53■□□□□ 0.24
SCFD1-215ENST00000555259 PLEKHD1A6NEE1 506 aa16.52■□□□□ 0.24
SCFD1-215ENST00000555259 MLECQ14165 292 aa16.52■□□□□ 0.24
SCFD1-215ENST00000555259 MAGI2Q86UL8 1455 aa16.52■□□□□ 0.24
SCFD1-215ENST00000555259 FER1L4A9Z1Z3 1794 aa16.51■□□□□ 0.23
SCFD1-215ENST00000555259 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.51■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 86.4 ms