RNA–Protein interactions for RNA: ENST00000555259.5

SCFD1-215, Transcript of sec1 family domain containing 1, humanhuman

TSL 1 (best)

Gene SCFD1, Length 1,553 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-215ENST00000555259 NISCHQ9Y2I1 1504 aa24.87■■□□□ 1.57
SCFD1-215ENST00000555259 ABCC9O60706 1549 aa22.97■■□□□ 1.27
SCFD1-215ENST00000555259 CCDC180Q9P1Z9 1646 aa22.49■■□□□ 1.19
SCFD1-215ENST00000555259 DNAJC5BQ9UF47 199 aa21.98■■□□□ 1.11
SCFD1-215ENST00000555259 RB1CC1Q8TDY2 1594 aa21.65■■□□□ 1.06
SCFD1-215ENST00000555259 NACADO15069 1562 aa21.39■■□□□ 1.01
SCFD1-215ENST00000555259 PABPN1Q86U42 306 aaKnown RBP eCLIP21.31■■□□□ 1
SCFD1-215ENST00000555259 DCAF8L2P0C7V8 631 aa21.19■□□□□ 0.98
SCFD1-215ENST00000555259 UNC13AQ9UPW8 1703 aa21.13■□□□□ 0.97
SCFD1-215ENST00000555259 BICRAQ9NZM4 1560 aa21.04■□□□□ 0.96
SCFD1-215ENST00000555259 MYO15BQ96JP2 1530 aa20.95■□□□□ 0.94
SCFD1-215ENST00000555259 CECR2Q9BXF3 1484 aa20.74■□□□□ 0.91
SCFD1-215ENST00000555259 CC2D2AQ9P2K1 1620 aa20.72■□□□□ 0.91
SCFD1-215ENST00000555259 SHROOM4Q9ULL8 1493 aa20.71■□□□□ 0.91
SCFD1-215ENST00000555259 EIF4G1Q04637 1599 aaKnown RBP20.57■□□□□ 0.88
SCFD1-215ENST00000555259 DNAJC5Q9H3Z4 198 aa20.51■□□□□ 0.87
SCFD1-215ENST00000555259 ZCCHC6Q5VYS8 1495 aaKnown RBP20.51■□□□□ 0.87
SCFD1-215ENST00000555259 DCAF1Q9Y4B6 1507 aa20.51■□□□□ 0.87
SCFD1-215ENST00000555259 SCRIBQ14160 1630 aa20.48■□□□□ 0.87
SCFD1-215ENST00000555259 CUX2O14529 1486 aa19.99■□□□□ 0.79
SCFD1-215ENST00000555259 ERCC6Q03468 1493 aa19.86■□□□□ 0.77
SCFD1-215ENST00000555259 NCAPD3P42695 1498 aa19.77■□□□□ 0.76
SCFD1-215ENST00000555259 ATAD2BQ9ULI0 1458 aa19.64■□□□□ 0.73
SCFD1-215ENST00000555259 NESP48681 1621 aa19.6■□□□□ 0.73
SCFD1-215ENST00000555259 HMGXB3Q12766 1538 aa19.57■□□□□ 0.72
SCFD1-215ENST00000555259 SMARCA2P51531 1590 aa19.54■□□□□ 0.72
SCFD1-215ENST00000555259 THOC2Q8NI27 1593 aaKnown RBP19.49■□□□□ 0.71
SCFD1-215ENST00000555259 SMARCA4P51532 1647 aa19.49■□□□□ 0.71
SCFD1-215ENST00000555259 TRIM41Q8WV44 630 aa19.41■□□□□ 0.7
SCFD1-215ENST00000555259 BAZ1BQ9UIG0 1483 aaKnown RBP19.41■□□□□ 0.7
SCFD1-215ENST00000555259 LAMC3Q9Y6N6 1575 aa19.38■□□□□ 0.69
SCFD1-215ENST00000555259 BAZ1AQ9NRL2 1556 aaPredicted RBP19.33■□□□□ 0.68
SCFD1-215ENST00000555259 PEG3Q9GZU2 1588 aa19.31■□□□□ 0.68
SCFD1-215ENST00000555259 KIF21AQ7Z4S6 1674 aa19.31■□□□□ 0.68
SCFD1-215ENST00000555259 PDS5BQ9NTI5 1447 aa19.3■□□□□ 0.68
SCFD1-215ENST00000555259 MROH2BQ7Z745 1585 aa19.16■□□□□ 0.66
SCFD1-215ENST00000555259 MRC2Q9UBG0 1479 aa19.15■□□□□ 0.66
SCFD1-215ENST00000555259 CADPSQ9ULU8 1353 aa19.14■□□□□ 0.65
SCFD1-215ENST00000555259 WDR62O43379 1518 aa19.12■□□□□ 0.65
SCFD1-215ENST00000555259 OSCARQ8IYS5 282 aa19■□□□□ 0.63
SCFD1-215ENST00000555259 CEP164Q9UPV0 1460 aa18.98■□□□□ 0.63
SCFD1-215ENST00000555259 FANCD2Q9BXW9 1451 aa18.92■□□□□ 0.62
SCFD1-215ENST00000555259 WIZO95785 1651 aa18.89■□□□□ 0.61
SCFD1-215ENST00000555259 CFTRP13569 1480 aa18.83■□□□□ 0.61
SCFD1-215ENST00000555259 URB2Q14146 1524 aaKnown RBP18.8■□□□□ 0.6
SCFD1-215ENST00000555259 RIMBP3CA6NJZ7 1639 aa18.79■□□□□ 0.6
SCFD1-215ENST00000555259 RIMBP3BA6NNM3 1639 aa18.79■□□□□ 0.6
SCFD1-215ENST00000555259 RIMBP3Q9UFD9 1639 aa18.79■□□□□ 0.6
SCFD1-215ENST00000555259 AEBP2Q6ZN18 517 aaPredicted RBP18.73■□□□□ 0.59
SCFD1-215ENST00000555259 ARHGEF11O15085 1522 aa18.7■□□□□ 0.58
SCFD1-215ENST00000555259 ZNF608Q9ULD9 1512 aaPredicted RBP18.65■□□□□ 0.58
SCFD1-215ENST00000555259 TOP2AP11388 1531 aaKnown RBP18.63■□□□□ 0.57
SCFD1-215ENST00000555259 IFT140Q96RY7 1462 aa18.62■□□□□ 0.57
SCFD1-215ENST00000555259 CYB5RLQ6IPT4 315 aa18.59■□□□□ 0.57
SCFD1-215ENST00000555259 RSF1Q96T23 1441 aaPredicted RBP18.59■□□□□ 0.57
SCFD1-215ENST00000555259 PRDM2Q13029 1718 aa18.55■□□□□ 0.56
SCFD1-215ENST00000555259 TRHP20396 242 aaPredicted RBP18.52■□□□□ 0.56
SCFD1-215ENST00000555259 TOPBP1Q92547 1522 aa18.51■□□□□ 0.55
SCFD1-215ENST00000555259 EIF4G3O43432 1585 aaKnown RBP18.51■□□□□ 0.55
SCFD1-215ENST00000555259 ARAP1Q96P48 1450 aa18.49■□□□□ 0.55
SCFD1-215ENST00000555259 CHD1O14646 1710 aa18.44■□□□□ 0.54
SCFD1-215ENST00000555259 ABCC8Q09428 1581 aa18.43■□□□□ 0.54
SCFD1-215ENST00000555259 CCDC88BA6NC98 1476 aa18.42■□□□□ 0.54
SCFD1-215ENST00000555259 AQRO60306 1485 aaKnown RBP eCLIP18.42■□□□□ 0.546e-7■■□□□ 11.6
SCFD1-215ENST00000555259 DNMBPQ6XZF7 1577 aa18.39■□□□□ 0.53
SCFD1-215ENST00000555259 FBLN2P98095 1184 aa18.38■□□□□ 0.53
SCFD1-215ENST00000555259 TARBP1Q13395 1621 aaKnown RBP18.38■□□□□ 0.53
SCFD1-215ENST00000555259 POLA1P09884 1462 aaPredicted RBP18.3■□□□□ 0.52
SCFD1-215ENST00000555259 CLASP1Q7Z460 1538 aa18.24■□□□□ 0.51
SCFD1-215ENST00000555259 RAD54L2Q9Y4B4 1467 aa18.24■□□□□ 0.51
SCFD1-215ENST00000555259 TDRD9Q8NDG6 1382 aaKnown RBP18.23■□□□□ 0.51
SCFD1-215ENST00000555259 SNAPC4Q5SXM2 1469 aa18.21■□□□□ 0.51
SCFD1-215ENST00000555259 SOGA1O94964 1423 aa18.19■□□□□ 0.5
SCFD1-215ENST00000555259 CHMP7Q8WUX9 453 aaPredicted RBP18.17■□□□□ 0.5
SCFD1-215ENST00000555259 SYNJ1O43426 1573 aa18.17■□□□□ 0.5
SCFD1-215ENST00000555259 WDR97A6NE52 1622 aa18.15■□□□□ 0.5
SCFD1-215ENST00000555259 MAGI1Q96QZ7 1491 aaPredicted RBP18.14■□□□□ 0.5
SCFD1-215ENST00000555259 FGD5Q6ZNL6 1462 aa18.11■□□□□ 0.49
SCFD1-215ENST00000555259 SYNJ2O15056 1496 aa18.1■□□□□ 0.49
SCFD1-215ENST00000555259 GRIN2BQ13224 1484 aa18.1■□□□□ 0.49
SCFD1-215ENST00000555259 GAPVD1Q14C86 1478 aa18.08■□□□□ 0.49
SCFD1-215ENST00000555259 CUX1P39880 1505 aa18.02■□□□□ 0.48
SCFD1-215ENST00000555259 PBRM1Q86U86 1689 aa17.96■□□□□ 0.47
SCFD1-215ENST00000555259 ERCC6L2Q5T890 1561 aa17.93■□□□□ 0.46
SCFD1-215ENST00000555259 ABCA5Q8WWZ7 1642 aa17.89■□□□□ 0.45
SCFD1-215ENST00000555259 ABCA10Q8WWZ4 1543 aa17.88■□□□□ 0.45
SCFD1-215ENST00000555259 GRIN2AQ12879 1464 aa17.86■□□□□ 0.45
SCFD1-215ENST00000555259 CEP170Q5SW79 1584 aa17.85■□□□□ 0.45
SCFD1-215ENST00000555259 NUP160Q12769 1436 aa17.83■□□□□ 0.45
SCFD1-215ENST00000555259 KIF13AQ9H1H9 1805 aa17.8■□□□□ 0.44
SCFD1-215ENST00000555259 ADAMTS12P58397 1594 aa17.79■□□□□ 0.44
SCFD1-215ENST00000555259 SHROOM2Q13796 1616 aa17.79■□□□□ 0.44
SCFD1-215ENST00000555259 FHAD1B1AJZ9 1412 aa17.72■□□□□ 0.43
SCFD1-215ENST00000555259 WRNQ14191 1432 aaPredicted RBP eCLIP17.72■□□□□ 0.43
SCFD1-215ENST00000555259 PRG4Q92954 1404 aaPredicted RBP17.69■□□□□ 0.42
SCFD1-215ENST00000555259 FAM69CQ0P6D2 419 aa17.67■□□□□ 0.42
SCFD1-215ENST00000555259 ABCC10Q5T3U5 1492 aa17.67■□□□□ 0.42
SCFD1-215ENST00000555259 ERICH3Q5RHP9 1530 aa17.64■□□□□ 0.42
SCFD1-215ENST00000555259 JPH4Q96JJ6 628 aa17.64■□□□□ 0.41
SCFD1-215ENST00000555259 KDM4FA0A1W2PPD8 638 aa17.63■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 224.1 ms