RNA–Protein interactions for RNA: ENST00000550872.1

CHMP1A-209, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2

Gene CHMP1A, Length 533 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-209ENST00000550872 RAPGEF2Q9Y4G8 1499 aa26.97■■□□□ 1.91
CHMP1A-209ENST00000550872 CYB5RLQ6IPT4 315 aa26.93■■□□□ 1.9
CHMP1A-209ENST00000550872 PRXQ9BXM0 1461 aa26.91■■□□□ 1.9
CHMP1A-209ENST00000550872 ARAP1Q96P48 1450 aa26.86■■□□□ 1.89
CHMP1A-209ENST00000550872 KIAA0586Q9BVV6 1533 aa26.85■■□□□ 1.89
CHMP1A-209ENST00000550872 JPH4Q96JJ6 628 aa26.83■■□□□ 1.89
CHMP1A-209ENST00000550872 SHROOM2Q13796 1616 aa26.76■■□□□ 1.87
CHMP1A-209ENST00000550872 PRG4Q92954 1404 aaPredicted RBP26.73■■□□□ 1.87
CHMP1A-209ENST00000550872 IQGAP2Q13576 1575 aa26.7■■□□□ 1.86
CHMP1A-209ENST00000550872 EHMT2Q96KQ7 1210 aa26.69■■□□□ 1.86
CHMP1A-209ENST00000550872 KIF21BO75037 1637 aa26.68■■□□□ 1.86
CHMP1A-209ENST00000550872 ERCC6L2Q5T890 1561 aa26.68■■□□□ 1.86
CHMP1A-209ENST00000550872 CTTNBP2Q8WZ74 1663 aa26.65■■□□□ 1.86
CHMP1A-209ENST00000550872 TRHP20396 242 aaPredicted RBP26.63■■□□□ 1.85
CHMP1A-209ENST00000550872 UBTFP17480 764 aaKnown RBP26.6■■□□□ 1.85
CHMP1A-209ENST00000550872 GOLGA3Q08378 1498 aa26.6■■□□□ 1.85
CHMP1A-209ENST00000550872 CARMIL2Q6F5E8 1435 aa26.57■■□□□ 1.84
CHMP1A-209ENST00000550872 UGGT2Q9NYU1 1516 aa26.56■■□□□ 1.84
CHMP1A-209ENST00000550872 DISP1Q96F81 1524 aa26.5■■□□□ 1.83
CHMP1A-209ENST00000550872 TTBK1Q5TCY1 1321 aaPredicted RBP26.49■■□□□ 1.83
CHMP1A-209ENST00000550872 RANGAP1P46060 587 aaPredicted RBP26.49■■□□□ 1.83
CHMP1A-209ENST00000550872 TNIKQ9UKE5 1360 aa26.47■■□□□ 1.83
CHMP1A-209ENST00000550872 PTPRGP23470 1445 aa26.45■■□□□ 1.82
CHMP1A-209ENST00000550872 KIAA0556O60303 1618 aa26.43■■□□□ 1.82
CHMP1A-209ENST00000550872 P3H3Q8IVL6 736 aa26.41■■□□□ 1.82
CHMP1A-209ENST00000550872 SAMD9Q5K651 1589 aa26.32■■□□□ 1.8
CHMP1A-209ENST00000550872 LOC105371045A0A1W2PR82 267 aa26.3■■□□□ 1.8
CHMP1A-209ENST00000550872 EFCAB5A4FU69 1503 aa26.26■■□□□ 1.79
CHMP1A-209ENST00000550872 UACAQ9BZF9 1416 aa26.26■■□□□ 1.79
CHMP1A-209ENST00000550872 NPM1P06748 294 aaKnown RBP eCLIP26.25■■□□□ 1.79
CHMP1A-209ENST00000550872 FHOD3Q2V2M9 1422 aa26.24■■□□□ 1.79
CHMP1A-209ENST00000550872 ADCY10Q96PN6 1610 aa26.22■■□□□ 1.79
CHMP1A-209ENST00000550872 ARHGAP35Q9NRY4 1499 aa26.2■■□□□ 1.78
CHMP1A-209ENST00000550872 PLB1Q6P1J6 1458 aa26.19■■□□□ 1.78
CHMP1A-209ENST00000550872 UHRF1BP1LA0JNW5 1464 aa26.18■■□□□ 1.78
CHMP1A-209ENST00000550872 ABCC2Q92887 1545 aa26.17■■□□□ 1.78
CHMP1A-209ENST00000550872 CLIP1P30622 1438 aa26.14■■□□□ 1.78
CHMP1A-209ENST00000550872 ABCA8O94911 1581 aa26.14■■□□□ 1.78
CHMP1A-209ENST00000550872 KDM5BQ9UGL1 1544 aa26.07■■□□□ 1.76
CHMP1A-209ENST00000550872 CEP162Q5TB80 1403 aa26.06■■□□□ 1.76
CHMP1A-209ENST00000550872 FMN1Q68DA7 1419 aa26.05■■□□□ 1.76
CHMP1A-209ENST00000550872 ARID3CA6NKF2 412 aa26.05■■□□□ 1.76
CHMP1A-209ENST00000550872 RAPGEF6Q8TEU7 1601 aa26.05■■□□□ 1.76
CHMP1A-209ENST00000550872 MAPKBP1O60336 1514 aa26.01■■□□□ 1.75
CHMP1A-209ENST00000550872 ATP1B4Q9UN42 357 aaPredicted RBP26■■□□□ 1.75
CHMP1A-209ENST00000550872 ZCCHC11Q5TAX3 1644 aaKnown RBP25.99■■□□□ 1.75
CHMP1A-209ENST00000550872 ASXL2Q76L83 1435 aa25.97■■□□□ 1.75
CHMP1A-209ENST00000550872 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.97■■□□□ 1.75
CHMP1A-209ENST00000550872 HNRNPUL2Q1KMD3 747 aaKnown RBP25.97■■□□□ 1.75
CHMP1A-209ENST00000550872 ATP10BO94823 1461 aa25.97■■□□□ 1.75
CHMP1A-209ENST00000550872 NUP153P49790 1475 aaKnown RBP25.97■■□□□ 1.75
CHMP1A-209ENST00000550872 AEBP2Q6ZN18 517 aaPredicted RBP25.92■■□□□ 1.74
CHMP1A-209ENST00000550872 FAM69CQ0P6D2 419 aa25.91■■□□□ 1.74
CHMP1A-209ENST00000550872 ABCC10Q5T3U5 1492 aa25.9■■□□□ 1.74
CHMP1A-209ENST00000550872 KIF13AQ9H1H9 1805 aa25.88■■□□□ 1.73
CHMP1A-209ENST00000550872 HECW1Q76N89 1606 aa25.88■■□□□ 1.73
CHMP1A-209ENST00000550872 CASKIN1Q8WXD9 1431 aa25.88■■□□□ 1.73
CHMP1A-209ENST00000550872 WDR7Q9Y4E6 1490 aa25.85■■□□□ 1.73
CHMP1A-209ENST00000550872 KCNH8Q96L42 1107 aa25.85■■□□□ 1.73
CHMP1A-209ENST00000550872 PCF11O94913 1555 aaKnown RBP25.84■■□□□ 1.73
CHMP1A-209ENST00000550872 DIP2BQ9P265 1576 aa25.83■■□□□ 1.73
CHMP1A-209ENST00000550872 PLEKHD1A6NEE1 506 aa25.83■■□□□ 1.73
CHMP1A-209ENST00000550872 EPRSP07814 1512 aaKnown RBP25.83■■□□□ 1.72
CHMP1A-209ENST00000550872 CDK13Q14004 1512 aaKnown RBP25.83■■□□□ 1.72
CHMP1A-209ENST00000550872 FYCO1Q9BQS8 1478 aa25.8■■□□□ 1.72
CHMP1A-209ENST00000550872 CDK11AQ9UQ88 783 aaPredicted RBP25.77■■□□□ 1.72
CHMP1A-209ENST00000550872 GLI2P10070 1586 aa25.74■■□□□ 1.71
CHMP1A-209ENST00000550872 CCDC18Q5T9S5 1454 aa25.73■■□□□ 1.71
CHMP1A-209ENST00000550872 VPS8Q8N3P4 1428 aa25.73■■□□□ 1.71
CHMP1A-209ENST00000550872 LRRIQ1Q96JM4 1722 aa25.73■■□□□ 1.71
CHMP1A-209ENST00000550872 TSPOAP1O95153 1857 aa25.66■■□□□ 1.7
CHMP1A-209ENST00000550872 CD109Q6YHK3 1445 aa25.63■■□□□ 1.69
CHMP1A-209ENST00000550872 TROQ12816 1431 aaPredicted RBP25.63■■□□□ 1.69
CHMP1A-209ENST00000550872 MAP3K4Q9Y6R4 1608 aa25.62■■□□□ 1.69
CHMP1A-209ENST00000550872 CFAP43Q8NDM7 1665 aa25.6■■□□□ 1.69
CHMP1A-209ENST00000550872 ABCA9Q8IUA7 1624 aa25.58■■□□□ 1.69
CHMP1A-209ENST00000550872 MAGI3Q5TCQ9 1506 aa25.56■■□□□ 1.68
CHMP1A-209ENST00000550872 MTUS2Q5JR59 1369 aa25.55■■□□□ 1.68
CHMP1A-209ENST00000550872 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP25.54■■□□□ 1.68
CHMP1A-209ENST00000550872 APLP2Q06481 763 aa25.54■■□□□ 1.68
CHMP1A-209ENST00000550872 KDM6BO15054 1643 aa25.54■■□□□ 1.68
CHMP1A-209ENST00000550872 PPRC1Q5VV67 1664 aaKnown RBP25.54■■□□□ 1.68
CHMP1A-209ENST00000550872 TEX14Q8IWB6 1497 aa25.53■■□□□ 1.68
CHMP1A-209ENST00000550872 KIF14Q15058 1648 aa25.52■■□□□ 1.68
CHMP1A-209ENST00000550872 TIAM1Q13009 1591 aa25.5■■□□□ 1.67
CHMP1A-209ENST00000550872 TTC37Q6PGP7 1564 aa25.49■■□□□ 1.67
CHMP1A-209ENST00000550872 MAP3K1Q13233 1512 aa25.45■■□□□ 1.66
CHMP1A-209ENST00000550872 EHBP1L1Q8N3D4 1523 aa25.44■■□□□ 1.66
CHMP1A-209ENST00000550872 PLCH2O75038 1416 aa25.43■■□□□ 1.66
CHMP1A-209ENST00000550872 KANK4Q5T7N3 995 aaPredicted RBP25.42■■□□□ 1.66
CHMP1A-209ENST00000550872 LRRC9Q6ZRR7 1453 aa25.4■■□□□ 1.66
CHMP1A-209ENST00000550872 EFCAB2Q5VUJ9 269 aa25.39■■□□□ 1.66
CHMP1A-209ENST00000550872 MYO5CQ9NQX4 1742 aa25.38■■□□□ 1.65
CHMP1A-209ENST00000550872 PHLDB1Q86UU1 1377 aa25.38■■□□□ 1.65
CHMP1A-209ENST00000550872 NEO1Q92859 1461 aa25.38■■□□□ 1.65
CHMP1A-209ENST00000550872 FANCAO15360 1455 aa25.37■■□□□ 1.65
CHMP1A-209ENST00000550872 CCNB3Q8WWL7 1395 aa25.36■■□□□ 1.65
CHMP1A-209ENST00000550872 KDM4FA0A1W2PPD8 638 aa25.36■■□□□ 1.65
CHMP1A-209ENST00000550872 COL17A1Q9UMD9 1497 aaPredicted RBP25.34■■□□□ 1.65
CHMP1A-209ENST00000550872 AKNAQ7Z591 1439 aa25.34■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms