RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 JPH4Q96JJ6 628 aa28.21■■■□□ 2.11
VPS29-207ENST00000549970 PRG4Q92954 1404 aaPredicted RBP28.2■■■□□ 2.11
VPS29-207ENST00000549970 CARMIL1Q5VZK9 1371 aa28.11■■■□□ 2.09
VPS29-207ENST00000549970 KIAA0586Q9BVV6 1533 aa28.09■■■□□ 2.09
VPS29-207ENST00000549970 RAPGEF2Q9Y4G8 1499 aa27.89■■■□□ 2.05
VPS29-207ENST00000549970 IQGAP2Q13576 1575 aa27.88■■■□□ 2.05
VPS29-207ENST00000549970 ADCY10Q96PN6 1610 aa27.85■■■□□ 2.05
VPS29-207ENST00000549970 NPM1P06748 294 aaKnown RBP eCLIP27.83■■■□□ 2.05
VPS29-207ENST00000549970 TTBK1Q5TCY1 1321 aaPredicted RBP27.82■■■□□ 2.04
VPS29-207ENST00000549970 CARMIL2Q6F5E8 1435 aa27.82■■■□□ 2.04
VPS29-207ENST00000549970 PTPRGP23470 1445 aa27.79■■■□□ 2.04
VPS29-207ENST00000549970 KIF13AQ9H1H9 1805 aa27.77■■■□□ 2.04
VPS29-207ENST00000549970 TNIKQ9UKE5 1360 aa27.76■■■□□ 2.03
VPS29-207ENST00000549970 MAPKBP1O60336 1514 aa27.74■■■□□ 2.03
VPS29-207ENST00000549970 DISP1Q96F81 1524 aa27.72■■■□□ 2.03
VPS29-207ENST00000549970 UGGT2Q9NYU1 1516 aa27.7■■■□□ 2.02
VPS29-207ENST00000549970 ABCC10Q5T3U5 1492 aa27.69■■■□□ 2.02
VPS29-207ENST00000549970 FAM69CQ0P6D2 419 aa27.68■■■□□ 2.02
VPS29-207ENST00000549970 CTTNBP2Q8WZ74 1663 aa27.66■■■□□ 2.02
VPS29-207ENST00000549970 PRXQ9BXM0 1461 aa27.66■■■□□ 2.02
VPS29-207ENST00000549970 DIP2BQ9P265 1576 aa27.64■■■□□ 2.01
VPS29-207ENST00000549970 KIAA0556O60303 1618 aa27.63■■■□□ 2.01
VPS29-207ENST00000549970 ABCC2Q92887 1545 aa27.61■■■□□ 2.01
VPS29-207ENST00000549970 UACAQ9BZF9 1416 aa27.58■■■□□ 2.01
VPS29-207ENST00000549970 UHRF1BP1LA0JNW5 1464 aa27.57■■■□□ 2
VPS29-207ENST00000549970 CSRNP3Q8WYN3 585 aa27.52■■■□□ 2
VPS29-207ENST00000549970 GOLGA3Q08378 1498 aa27.5■■□□□ 1.99
VPS29-207ENST00000549970 ASXL2Q76L83 1435 aa27.5■■□□□ 1.99
VPS29-207ENST00000549970 TSPOAP1O95153 1857 aa27.47■■□□□ 1.99
VPS29-207ENST00000549970 PLB1Q6P1J6 1458 aa27.46■■□□□ 1.99
VPS29-207ENST00000549970 KDM5BQ9UGL1 1544 aa27.45■■□□□ 1.98
VPS29-207ENST00000549970 EEA1Q15075 1411 aa27.44■■□□□ 1.98
VPS29-207ENST00000549970 ZCCHC11Q5TAX3 1644 aaKnown RBP27.42■■□□□ 1.98
VPS29-207ENST00000549970 FAM9AQ8IZU1 332 aaPredicted RBP27.4■■□□□ 1.98
VPS29-207ENST00000549970 GLI2P10070 1586 aa27.36■■□□□ 1.97
VPS29-207ENST00000549970 ABCA8O94911 1581 aa27.35■■□□□ 1.97
VPS29-207ENST00000549970 KDM6BO15054 1643 aa27.34■■□□□ 1.97
VPS29-207ENST00000549970 P3H3Q8IVL6 736 aa27.34■■□□□ 1.97
VPS29-207ENST00000549970 EPRSP07814 1512 aaKnown RBP27.32■■□□□ 1.96
VPS29-207ENST00000549970 AEBP2Q6ZN18 517 aaPredicted RBP27.29■■□□□ 1.96
VPS29-207ENST00000549970 PPRC1Q5VV67 1664 aaKnown RBP27.28■■□□□ 1.96
VPS29-207ENST00000549970 WDR7Q9Y4E6 1490 aa27.27■■□□□ 1.96
VPS29-207ENST00000549970 SAMD9Q5K651 1589 aa27.26■■□□□ 1.96
VPS29-207ENST00000549970 CHIC1Q5VXU3 224 aa27.26■■□□□ 1.95
VPS29-207ENST00000549970 MAP3K4Q9Y6R4 1608 aa27.24■■□□□ 1.95
VPS29-207ENST00000549970 RANGAP1P46060 587 aaPredicted RBP27.24■■□□□ 1.95
VPS29-207ENST00000549970 KIF21BO75037 1637 aa27.22■■□□□ 1.95
VPS29-207ENST00000549970 ARID3CA6NKF2 412 aa27.2■■□□□ 1.94
VPS29-207ENST00000549970 KCNH8Q96L42 1107 aa27.16■■□□□ 1.94
VPS29-207ENST00000549970 TEX14Q8IWB6 1497 aa27.14■■□□□ 1.94
VPS29-207ENST00000549970 FHOD3Q2V2M9 1422 aa27.13■■□□□ 1.93
VPS29-207ENST00000549970 ATP10BO94823 1461 aa27.13■■□□□ 1.93
VPS29-207ENST00000549970 RAPGEF6Q8TEU7 1601 aa27.12■■□□□ 1.93
VPS29-207ENST00000549970 EHMT2Q96KQ7 1210 aa27.12■■□□□ 1.93
VPS29-207ENST00000549970 CFAP43Q8NDM7 1665 aa27.08■■□□□ 1.93
VPS29-207ENST00000549970 CD109Q6YHK3 1445 aa27.07■■□□□ 1.92
VPS29-207ENST00000549970 COL17A1Q9UMD9 1497 aaPredicted RBP27.07■■□□□ 1.92
VPS29-207ENST00000549970 EFCAB5A4FU69 1503 aa27.05■■□□□ 1.92
VPS29-207ENST00000549970 UBTFP17480 764 aaKnown RBP27.04■■□□□ 1.92
VPS29-207ENST00000549970 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.03■■□□□ 1.92
VPS29-207ENST00000549970 HNRNPUL2Q1KMD3 747 aaKnown RBP27.03■■□□□ 1.92
VPS29-207ENST00000549970 MAGI3Q5TCQ9 1506 aa27.03■■□□□ 1.92
VPS29-207ENST00000549970 NUP153P49790 1475 aaKnown RBP27.01■■□□□ 1.91
VPS29-207ENST00000549970 KDM4FA0A1W2PPD8 638 aa26.94■■□□□ 1.9
VPS29-207ENST00000549970 ABCA9Q8IUA7 1624 aa26.92■■□□□ 1.9
VPS29-207ENST00000549970 ARHGAP35Q9NRY4 1499 aa26.86■■□□□ 1.89
VPS29-207ENST00000549970 PLEKHD1A6NEE1 506 aa26.84■■□□□ 1.89
VPS29-207ENST00000549970 FMN1Q68DA7 1419 aa26.81■■□□□ 1.88
VPS29-207ENST00000549970 ADGRL1O94910 1474 aa26.81■■□□□ 1.88
VPS29-207ENST00000549970 CDK13Q14004 1512 aaKnown RBP26.8■■□□□ 1.88
VPS29-207ENST00000549970 ARAP3Q8WWN8 1544 aa26.8■■□□□ 1.88
VPS29-207ENST00000549970 ATP1B4Q9UN42 357 aaPredicted RBP26.79■■□□□ 1.88
VPS29-207ENST00000549970 PHLDB1Q86UU1 1377 aa26.76■■□□□ 1.87
VPS29-207ENST00000549970 HECW1Q76N89 1606 aa26.76■■□□□ 1.87
VPS29-207ENST00000549970 NEO1Q92859 1461 aa26.75■■□□□ 1.87
VPS29-207ENST00000549970 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP26.72■■□□□ 1.87
VPS29-207ENST00000549970 TTC37Q6PGP7 1564 aa26.7■■□□□ 1.86
VPS29-207ENST00000549970 RAPGEF3O95398 923 aa26.69■■□□□ 1.86
VPS29-207ENST00000549970 FANCAO15360 1455 aa26.64■■□□□ 1.86
VPS29-207ENST00000549970 FRMPD1Q5SYB0 1578 aa26.63■■□□□ 1.85
VPS29-207ENST00000549970 AKNAQ7Z591 1439 aa26.62■■□□□ 1.85
VPS29-207ENST00000549970 CFAP74Q9C0B2 1584 aa26.62■■□□□ 1.85
VPS29-207ENST00000549970 CDK11AQ9UQ88 783 aaPredicted RBP26.61■■□□□ 1.85
VPS29-207ENST00000549970 LRRIQ1Q96JM4 1722 aa26.59■■□□□ 1.85
VPS29-207ENST00000549970 DENND4BO75064 1496 aaPredicted RBP26.58■■□□□ 1.85
VPS29-207ENST00000549970 PCF11O94913 1555 aaKnown RBP26.57■■□□□ 1.84
VPS29-207ENST00000549970 PLCH2O75038 1416 aa26.55■■□□□ 1.84
VPS29-207ENST00000549970 TROQ12816 1431 aaPredicted RBP26.55■■□□□ 1.84
VPS29-207ENST00000549970 CASKIN1Q8WXD9 1431 aa26.55■■□□□ 1.84
VPS29-207ENST00000549970 KIF14Q15058 1648 aa26.54■■□□□ 1.84
VPS29-207ENST00000549970 RICTORQ6R327 1708 aa26.54■■□□□ 1.84
VPS29-207ENST00000549970 CLIP1P30622 1438 aa26.54■■□□□ 1.84
VPS29-207ENST00000549970 MYO5CQ9NQX4 1742 aa26.51■■□□□ 1.83
VPS29-207ENST00000549970 CCDC18Q5T9S5 1454 aa26.49■■□□□ 1.83
VPS29-207ENST00000549970 ARHGEF40Q8TER5 1519 aa26.48■■□□□ 1.83
VPS29-207ENST00000549970 SCAPERQ9BY12 1400 aa26.46■■□□□ 1.83
VPS29-207ENST00000549970 FYCO1Q9BQS8 1478 aa26.45■■□□□ 1.82
VPS29-207ENST00000549970 EFCAB2Q5VUJ9 269 aa26.45■■□□□ 1.82
VPS29-207ENST00000549970 ARID4BQ4LE39 1312 aaPredicted RBP26.44■■□□□ 1.82
VPS29-207ENST00000549970 ZMYM4Q5VZL5 1548 aa26.44■■□□□ 1.82
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms