RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 NISCHQ9Y2I1 1504 aa40.44■■■■■ 4.06
VPS29-207ENST00000549970 CCDC180Q9P1Z9 1646 aa36.15■■■■□ 3.38
VPS29-207ENST00000549970 ABCC9O60706 1549 aa35.91■■■■□ 3.34
VPS29-207ENST00000549970 RB1CC1Q8TDY2 1594 aa34.28■■■■□ 3.08
VPS29-207ENST00000549970 NACADO15069 1562 aa34.11■■■■□ 3.05
VPS29-207ENST00000549970 DCAF8L2P0C7V8 631 aa34.07■■■■□ 3.04
VPS29-207ENST00000549970 MYO15BQ96JP2 1530 aa33.7■■■□□ 2.99
VPS29-207ENST00000549970 ZCCHC6Q5VYS8 1495 aaKnown RBP33.59■■■□□ 2.97
VPS29-207ENST00000549970 UNC13AQ9UPW8 1703 aa33.52■■■□□ 2.96
VPS29-207ENST00000549970 PABPN1Q86U42 306 aaKnown RBP eCLIP33.49■■■□□ 2.95
VPS29-207ENST00000549970 DCAF1Q9Y4B6 1507 aa33.39■■■□□ 2.94
VPS29-207ENST00000549970 DNAJC5BQ9UF47 199 aa33.39■■■□□ 2.94
VPS29-207ENST00000549970 BICRAQ9NZM4 1560 aa33.26■■■□□ 2.92
VPS29-207ENST00000549970 SCRIBQ14160 1630 aa33.02■■■□□ 2.88
VPS29-207ENST00000549970 SHROOM4Q9ULL8 1493 aa32.81■■■□□ 2.84
VPS29-207ENST00000549970 EIF4G1Q04637 1599 aaKnown RBP32.44■■■□□ 2.78
VPS29-207ENST00000549970 CC2D2AQ9P2K1 1620 aa32.44■■■□□ 2.78
VPS29-207ENST00000549970 CECR2Q9BXF3 1484 aa32.29■■■□□ 2.76
VPS29-207ENST00000549970 SMARCA4P51532 1647 aa31.5■■■□□ 2.63
VPS29-207ENST00000549970 NCAPD3P42695 1498 aa31.47■■■□□ 2.63
VPS29-207ENST00000549970 ATAD2BQ9ULI0 1458 aa31.45■■■□□ 2.62
VPS29-207ENST00000549970 BAZ1AQ9NRL2 1556 aaPredicted RBP31.38■■■□□ 2.61
VPS29-207ENST00000549970 SMARCA2P51531 1590 aa31.37■■■□□ 2.61
VPS29-207ENST00000549970 HMGXB3Q12766 1538 aa31.28■■■□□ 2.6
VPS29-207ENST00000549970 MROH2BQ7Z745 1585 aa31.18■■■□□ 2.58
VPS29-207ENST00000549970 BAZ1BQ9UIG0 1483 aaKnown RBP31.17■■■□□ 2.58
VPS29-207ENST00000549970 PEG3Q9GZU2 1588 aa31.16■■■□□ 2.58
VPS29-207ENST00000549970 ERCC6Q03468 1493 aa30.99■■■□□ 2.55
VPS29-207ENST00000549970 NESP48681 1621 aa30.93■■■□□ 2.54
VPS29-207ENST00000549970 WIZO95785 1651 aa30.84■■■□□ 2.53
VPS29-207ENST00000549970 CUX2O14529 1486 aa30.78■■■□□ 2.52
VPS29-207ENST00000549970 LAMC3Q9Y6N6 1575 aa30.73■■■□□ 2.51
VPS29-207ENST00000549970 RSF1Q96T23 1441 aaPredicted RBP30.64■■■□□ 2.49
VPS29-207ENST00000549970 CADPSQ9ULU8 1353 aa30.55■■■□□ 2.48
VPS29-207ENST00000549970 PDS5BQ9NTI5 1447 aa30.55■■■□□ 2.48
VPS29-207ENST00000549970 THOC2Q8NI27 1593 aaKnown RBP30.54■■■□□ 2.48
VPS29-207ENST00000549970 KIF21AQ7Z4S6 1674 aa30.54■■■□□ 2.48
VPS29-207ENST00000549970 TOP2AP11388 1531 aaKnown RBP30.45■■■□□ 2.47
VPS29-207ENST00000549970 DNAJC5Q9H3Z4 198 aa30.41■■■□□ 2.46
VPS29-207ENST00000549970 MRC2Q9UBG0 1479 aa30.27■■■□□ 2.44
VPS29-207ENST00000549970 CFTRP13569 1480 aa30.26■■■□□ 2.44
VPS29-207ENST00000549970 CEP164Q9UPV0 1460 aa30.23■■■□□ 2.43
VPS29-207ENST00000549970 FANCD2Q9BXW9 1451 aa30.22■■■□□ 2.43
VPS29-207ENST00000549970 WDR62O43379 1518 aa30.19■■■□□ 2.42
VPS29-207ENST00000549970 CCDC88BA6NC98 1476 aa30.11■■■□□ 2.41
VPS29-207ENST00000549970 PRDM2Q13029 1718 aa30■■■□□ 2.39
VPS29-207ENST00000549970 URB2Q14146 1524 aaKnown RBP29.95■■■□□ 2.38
VPS29-207ENST00000549970 TOPBP1Q92547 1522 aa29.68■■■□□ 2.34
VPS29-207ENST00000549970 ABCC8Q09428 1581 aa29.6■■■□□ 2.33
VPS29-207ENST00000549970 IFT140Q96RY7 1462 aa29.6■■■□□ 2.33
VPS29-207ENST00000549970 DNMBPQ6XZF7 1577 aa29.6■■■□□ 2.33
VPS29-207ENST00000549970 SUPT5HO00267 1087 aaKnown RBP29.57■■■□□ 2.32
VPS29-207ENST00000549970 ZNF608Q9ULD9 1512 aaPredicted RBP29.54■■■□□ 2.32
VPS29-207ENST00000549970 OSCARQ8IYS5 282 aa29.44■■■□□ 2.3
VPS29-207ENST00000549970 POLA1P09884 1462 aaPredicted RBP29.4■■■□□ 2.3
VPS29-207ENST00000549970 EIF4G3O43432 1585 aaKnown RBP29.39■■■□□ 2.3
VPS29-207ENST00000549970 TARBP1Q13395 1621 aaKnown RBP29.38■■■□□ 2.29
VPS29-207ENST00000549970 AQRO60306 1485 aaKnown RBP eCLIP29.31■■■□□ 2.282e-9■■■■■ 38.2
VPS29-207ENST00000549970 RAD54L2Q9Y4B4 1467 aa29.3■■■□□ 2.28
VPS29-207ENST00000549970 CUX1P39880 1505 aa29.29■■■□□ 2.28
VPS29-207ENST00000549970 TRIM41Q8WV44 630 aa29.28■■■□□ 2.28
VPS29-207ENST00000549970 FGD5Q6ZNL6 1462 aa29.27■■■□□ 2.28
VPS29-207ENST00000549970 SOGA1O94964 1423 aa29.27■■■□□ 2.28
VPS29-207ENST00000549970 TDRD9Q8NDG6 1382 aaKnown RBP29.18■■■□□ 2.26
VPS29-207ENST00000549970 CHD1O14646 1710 aa29.12■■■□□ 2.25
VPS29-207ENST00000549970 FBLN2P98095 1184 aa29.09■■■□□ 2.25
VPS29-207ENST00000549970 WDR97A6NE52 1622 aa29.09■■■□□ 2.25
VPS29-207ENST00000549970 RIMBP3CA6NJZ7 1639 aa29.04■■■□□ 2.24
VPS29-207ENST00000549970 RIMBP3BA6NNM3 1639 aa29.04■■■□□ 2.24
VPS29-207ENST00000549970 RIMBP3Q9UFD9 1639 aa29.04■■■□□ 2.24
VPS29-207ENST00000549970 SNAPC4Q5SXM2 1469 aa29.04■■■□□ 2.24
VPS29-207ENST00000549970 ARHGEF11O15085 1522 aa28.98■■■□□ 2.23
VPS29-207ENST00000549970 GRIN2BQ13224 1484 aa28.97■■■□□ 2.23
VPS29-207ENST00000549970 MAGI1Q96QZ7 1491 aaPredicted RBP28.94■■■□□ 2.22
VPS29-207ENST00000549970 ABCA10Q8WWZ4 1543 aa28.93■■■□□ 2.22
VPS29-207ENST00000549970 GAPVD1Q14C86 1478 aa28.92■■■□□ 2.22
VPS29-207ENST00000549970 WRNQ14191 1432 aaPredicted RBP eCLIP28.92■■■□□ 2.22
VPS29-207ENST00000549970 PBRM1Q86U86 1689 aa28.9■■■□□ 2.22
VPS29-207ENST00000549970 CHMP7Q8WUX9 453 aaPredicted RBP28.9■■■□□ 2.22
VPS29-207ENST00000549970 TOP2BQ02880 1626 aa28.89■■■□□ 2.22
VPS29-207ENST00000549970 SYNJ1O43426 1573 aa28.88■■■□□ 2.21
VPS29-207ENST00000549970 BIVM-ERCC5R4GMW8 1640 aa28.88■■■□□ 2.21
VPS29-207ENST00000549970 ABCA5Q8WWZ7 1642 aa28.87■■■□□ 2.21
VPS29-207ENST00000549970 SYNJ2O15056 1496 aa28.85■■■□□ 2.21
VPS29-207ENST00000549970 CLASP1Q7Z460 1538 aa28.77■■■□□ 2.2
VPS29-207ENST00000549970 CYB5RLQ6IPT4 315 aa28.76■■■□□ 2.19
VPS29-207ENST00000549970 ARAP1Q96P48 1450 aa28.72■■■□□ 2.19
VPS29-207ENST00000549970 ADAMTS12P58397 1594 aa28.64■■■□□ 2.18
VPS29-207ENST00000549970 GRIN2AQ12879 1464 aa28.6■■■□□ 2.17
VPS29-207ENST00000549970 ERICH3Q5RHP9 1530 aa28.57■■■□□ 2.16
VPS29-207ENST00000549970 FHAD1B1AJZ9 1412 aa28.56■■■□□ 2.16
VPS29-207ENST00000549970 CEP170Q5SW79 1584 aa28.5■■■□□ 2.15
VPS29-207ENST00000549970 NUP160Q12769 1436 aa28.49■■■□□ 2.15
VPS29-207ENST00000549970 ERCC6L2Q5T890 1561 aa28.37■■■□□ 2.13
VPS29-207ENST00000549970 TRHP20396 242 aaPredicted RBP28.36■■■□□ 2.13
VPS29-207ENST00000549970 KIF27Q86VH2 1401 aa28.34■■■□□ 2.13
VPS29-207ENST00000549970 SHROOM2Q13796 1616 aa28.32■■■□□ 2.12
VPS29-207ENST00000549970 IGF1RP08069 1367 aa28.28■■■□□ 2.12
VPS29-207ENST00000549970 RUSC2Q8N2Y8 1516 aa28.23■■■□□ 2.11
VPS29-207ENST00000549970 CUL7Q14999 1698 aa28.23■■■□□ 2.11
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms