RNA–Protein interactions for RNA: ENST00000547687.1

CHMP1A-204, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 1 (best)

Gene CHMP1A, Length 2,007 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-204ENST00000547687 RUSC2Q8N2Y8 1516 aa26.7■■□□□ 1.86
CHMP1A-204ENST00000547687 SHROOM2Q13796 1616 aa26.64■■□□□ 1.86
CHMP1A-204ENST00000547687 EEA1Q15075 1411 aa26.62■■□□□ 1.85
CHMP1A-204ENST00000547687 CARMIL1Q5VZK9 1371 aa26.62■■□□□ 1.85
CHMP1A-204ENST00000547687 EHMT2Q96KQ7 1210 aa26.6■■□□□ 1.85
CHMP1A-204ENST00000547687 CSRNP3Q8WYN3 585 aa26.55■■□□□ 1.84
CHMP1A-204ENST00000547687 JPH4Q96JJ6 628 aa26.55■■□□□ 1.84
CHMP1A-204ENST00000547687 PRG4Q92954 1404 aaPredicted RBP26.55■■□□□ 1.84
CHMP1A-204ENST00000547687 KIAA0586Q9BVV6 1533 aa26.48■■□□□ 1.83
CHMP1A-204ENST00000547687 RAPGEF2Q9Y4G8 1499 aa26.42■■□□□ 1.82
CHMP1A-204ENST00000547687 TRHP20396 242 aaPredicted RBP26.41■■□□□ 1.82
CHMP1A-204ENST00000547687 IQGAP2Q13576 1575 aa26.36■■□□□ 1.81
CHMP1A-204ENST00000547687 TTBK1Q5TCY1 1321 aaPredicted RBP26.33■■□□□ 1.81
CHMP1A-204ENST00000547687 KIF21BO75037 1637 aa26.3■■□□□ 1.8
CHMP1A-204ENST00000547687 GOLGA3Q08378 1498 aa26.29■■□□□ 1.8
CHMP1A-204ENST00000547687 PRXQ9BXM0 1461 aa26.28■■□□□ 1.8
CHMP1A-204ENST00000547687 CTTNBP2Q8WZ74 1663 aa26.27■■□□□ 1.8
CHMP1A-204ENST00000547687 PCGF6Q9BYE7 350 aa26.25■■□□□ 1.79
CHMP1A-204ENST00000547687 UBTFP17480 764 aaKnown RBP26.23■■□□□ 1.79
CHMP1A-204ENST00000547687 ADCY10Q96PN6 1610 aa26.21■■□□□ 1.79
CHMP1A-204ENST00000547687 TNIKQ9UKE5 1360 aa26.2■■□□□ 1.79
CHMP1A-204ENST00000547687 DISP1Q96F81 1524 aa26.2■■□□□ 1.78
CHMP1A-204ENST00000547687 CARMIL2Q6F5E8 1435 aa26.19■■□□□ 1.78
CHMP1A-204ENST00000547687 PTPRGP23470 1445 aa26.16■■□□□ 1.78
CHMP1A-204ENST00000547687 UGGT2Q9NYU1 1516 aa26.16■■□□□ 1.78
CHMP1A-204ENST00000547687 KIAA0556O60303 1618 aa26.12■■□□□ 1.77
CHMP1A-204ENST00000547687 CEP162Q5TB80 1403 aa26.08■■□□□ 1.77
CHMP1A-204ENST00000547687 KIF13AQ9H1H9 1805 aa26.06■■□□□ 1.76
CHMP1A-204ENST00000547687 NPM1P06748 294 aaKnown RBP eCLIP26.06■■□□□ 1.76
CHMP1A-204ENST00000547687 TRIM26Q12899 539 aaPredicted RBP26.05■■□□□ 1.76
CHMP1A-204ENST00000547687 RANGAP1P46060 587 aaPredicted RBP26.01■■□□□ 1.75
CHMP1A-204ENST00000547687 P3H3Q8IVL6 736 aa25.99■■□□□ 1.75
CHMP1A-204ENST00000547687 UACAQ9BZF9 1416 aa25.98■■□□□ 1.75
CHMP1A-204ENST00000547687 MAPKBP1O60336 1514 aa25.97■■□□□ 1.75
CHMP1A-204ENST00000547687 ABCC2Q92887 1545 aa25.95■■□□□ 1.74
CHMP1A-204ENST00000547687 PLB1Q6P1J6 1458 aa25.92■■□□□ 1.74
CHMP1A-204ENST00000547687 FAM69CQ0P6D2 419 aa25.92■■□□□ 1.74
CHMP1A-204ENST00000547687 DIP2BQ9P265 1576 aa25.91■■□□□ 1.74
CHMP1A-204ENST00000547687 UHRF1BP1LA0JNW5 1464 aa25.91■■□□□ 1.74
CHMP1A-204ENST00000547687 ABCC10Q5T3U5 1492 aa25.9■■□□□ 1.74
CHMP1A-204ENST00000547687 CLIP1P30622 1438 aa25.89■■□□□ 1.73
CHMP1A-204ENST00000547687 HRCP23327 699 aa25.88■■□□□ 1.73
CHMP1A-204ENST00000547687 ZCCHC11Q5TAX3 1644 aaKnown RBP25.88■■□□□ 1.73
CHMP1A-204ENST00000547687 TSPOAP1O95153 1857 aa25.87■■□□□ 1.73
CHMP1A-204ENST00000547687 SAMD9Q5K651 1589 aa25.87■■□□□ 1.73
CHMP1A-204ENST00000547687 ASXL2Q76L83 1435 aa25.85■■□□□ 1.73
CHMP1A-204ENST00000547687 ABCA8O94911 1581 aa25.83■■□□□ 1.72
CHMP1A-204ENST00000547687 KDM5BQ9UGL1 1544 aa25.83■■□□□ 1.72
CHMP1A-204ENST00000547687 ARID3CA6NKF2 412 aa25.81■■□□□ 1.72
CHMP1A-204ENST00000547687 FHOD3Q2V2M9 1422 aa25.77■■□□□ 1.72
CHMP1A-204ENST00000547687 RAPGEF6Q8TEU7 1601 aa25.69■■□□□ 1.7
CHMP1A-204ENST00000547687 EPRSP07814 1512 aaKnown RBP25.68■■□□□ 1.7
CHMP1A-204ENST00000547687 EFCAB5A4FU69 1503 aa25.65■■□□□ 1.7
CHMP1A-204ENST00000547687 PPARGC1BQ86YN6 1023 aaKnown RBP25.65■■□□□ 1.7
CHMP1A-204ENST00000547687 WDR7Q9Y4E6 1490 aa25.65■■□□□ 1.7
CHMP1A-204ENST00000547687 PPRC1Q5VV67 1664 aaKnown RBP25.65■■□□□ 1.7
CHMP1A-204ENST00000547687 ARHGAP35Q9NRY4 1499 aa25.65■■□□□ 1.7
CHMP1A-204ENST00000547687 VPS8Q8N3P4 1428 aa25.64■■□□□ 1.7
CHMP1A-204ENST00000547687 GLI2P10070 1586 aa25.64■■□□□ 1.7
CHMP1A-204ENST00000547687 KCNH8Q96L42 1107 aa25.64■■□□□ 1.69
CHMP1A-204ENST00000547687 ATP10BO94823 1461 aa25.62■■□□□ 1.69
CHMP1A-204ENST00000547687 MAP3K4Q9Y6R4 1608 aa25.6■■□□□ 1.69
CHMP1A-204ENST00000547687 NUP153P49790 1475 aaKnown RBP25.58■■□□□ 1.69
CHMP1A-204ENST00000547687 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.58■■□□□ 1.68
CHMP1A-204ENST00000547687 HNRNPUL2Q1KMD3 747 aaKnown RBP25.58■■□□□ 1.68
CHMP1A-204ENST00000547687 KDM6BO15054 1643 aa25.56■■□□□ 1.68
CHMP1A-204ENST00000547687 ATP1B4Q9UN42 357 aaPredicted RBP25.48■■□□□ 1.67
CHMP1A-204ENST00000547687 CFAP43Q8NDM7 1665 aa25.47■■□□□ 1.67
CHMP1A-204ENST00000547687 CDK13Q14004 1512 aaKnown RBP25.46■■□□□ 1.67
CHMP1A-204ENST00000547687 CD109Q6YHK3 1445 aa25.45■■□□□ 1.67
CHMP1A-204ENST00000547687 FMN1Q68DA7 1419 aa25.41■■□□□ 1.66
CHMP1A-204ENST00000547687 COL17A1Q9UMD9 1497 aaPredicted RBP25.41■■□□□ 1.66
CHMP1A-204ENST00000547687 TEX14Q8IWB6 1497 aa25.41■■□□□ 1.66
CHMP1A-204ENST00000547687 APLP2Q06481 763 aa25.41■■□□□ 1.66
CHMP1A-204ENST00000547687 LRRIQ1Q96JM4 1722 aa25.39■■□□□ 1.66
CHMP1A-204ENST00000547687 HECW1Q76N89 1606 aa25.38■■□□□ 1.65
CHMP1A-204ENST00000547687 ABCA9Q8IUA7 1624 aa25.38■■□□□ 1.65
CHMP1A-204ENST00000547687 MAGI3Q5TCQ9 1506 aa25.35■■□□□ 1.65
CHMP1A-204ENST00000547687 PLEKHD1A6NEE1 506 aa25.35■■□□□ 1.65
CHMP1A-204ENST00000547687 PCF11O94913 1555 aaKnown RBP25.32■■□□□ 1.64
CHMP1A-204ENST00000547687 TTC37Q6PGP7 1564 aa25.28■■□□□ 1.64
CHMP1A-204ENST00000547687 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP25.26■■□□□ 1.63
CHMP1A-204ENST00000547687 ZEB1P37275 1124 aaPredicted RBP25.26■■□□□ 1.63
CHMP1A-204ENST00000547687 KANK4Q5T7N3 995 aaPredicted RBP25.22■■□□□ 1.63
CHMP1A-204ENST00000547687 CASKIN1Q8WXD9 1431 aa25.22■■□□□ 1.63
CHMP1A-204ENST00000547687 KIF14Q15058 1648 aa25.21■■□□□ 1.63
CHMP1A-204ENST00000547687 FYCO1Q9BQS8 1478 aa25.19■■□□□ 1.62
CHMP1A-204ENST00000547687 AEBP2Q6ZN18 517 aaPredicted RBP25.17■■□□□ 1.62
CHMP1A-204ENST00000547687 TIAM1Q13009 1591 aa25.17■■□□□ 1.62
CHMP1A-204ENST00000547687 MAP3K1Q13233 1512 aa25.16■■□□□ 1.62
CHMP1A-204ENST00000547687 CDK11AQ9UQ88 783 aaPredicted RBP25.15■■□□□ 1.62
CHMP1A-204ENST00000547687 ARAP3Q8WWN8 1544 aa25.14■■□□□ 1.62
CHMP1A-204ENST00000547687 RAPGEF3O95398 923 aa25.14■■□□□ 1.62
CHMP1A-204ENST00000547687 TROQ12816 1431 aaPredicted RBP25.13■■□□□ 1.61
CHMP1A-204ENST00000547687 NEO1Q92859 1461 aa25.12■■□□□ 1.61
CHMP1A-204ENST00000547687 FANCAO15360 1455 aa25.12■■□□□ 1.61
CHMP1A-204ENST00000547687 CCDC18Q5T9S5 1454 aa25.12■■□□□ 1.61
CHMP1A-204ENST00000547687 MYO5CQ9NQX4 1742 aa25.11■■□□□ 1.61
CHMP1A-204ENST00000547687 KDM4FA0A1W2PPD8 638 aa25.08■■□□□ 1.61
CHMP1A-204ENST00000547687 FRMPD1Q5SYB0 1578 aa25.08■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 65.5 ms