RNA–Protein interactions for RNA: ENST00000545042.1

DDX55-213, Transcript of DEAD-box helicase 55, humanhuman

TSL 5

Gene DDX55, Length 450 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-213ENST00000545042 KIAA0586Q9BVV6 1533 aa22.37■■□□□ 1.17
DDX55-213ENST00000545042 PRG4Q92954 1404 aaPredicted RBP22.36■■□□□ 1.17
DDX55-213ENST00000545042 ERCC6L2Q5T890 1561 aa22.35■■□□□ 1.17
DDX55-213ENST00000545042 RAPGEF2Q9Y4G8 1499 aa22.33■■□□□ 1.16
DDX55-213ENST00000545042 IQGAP2Q13576 1575 aa22.23■■□□□ 1.15
DDX55-213ENST00000545042 EEA1Q15075 1411 aa22.2■■□□□ 1.14
DDX55-213ENST00000545042 TRHP20396 242 aaPredicted RBP22.19■■□□□ 1.14
DDX55-213ENST00000545042 CSRNP3Q8WYN3 585 aa22.19■■□□□ 1.14
DDX55-213ENST00000545042 CARMIL2Q6F5E8 1435 aa22.19■■□□□ 1.14
DDX55-213ENST00000545042 PRXQ9BXM0 1461 aa22.19■■□□□ 1.14
DDX55-213ENST00000545042 CHIC1Q5VXU3 224 aa22.18■■□□□ 1.14
DDX55-213ENST00000545042 PTPRGP23470 1445 aa22.1■■□□□ 1.13
DDX55-213ENST00000545042 CTTNBP2Q8WZ74 1663 aa22.1■■□□□ 1.13
DDX55-213ENST00000545042 TNIKQ9UKE5 1360 aa22.1■■□□□ 1.13
DDX55-213ENST00000545042 FAM9AQ8IZU1 332 aaPredicted RBP22.09■■□□□ 1.13
DDX55-213ENST00000545042 UGGT2Q9NYU1 1516 aa22.09■■□□□ 1.13
DDX55-213ENST00000545042 NPM1P06748 294 aaKnown RBP eCLIP22.07■■□□□ 1.12
DDX55-213ENST00000545042 TTBK1Q5TCY1 1321 aaPredicted RBP22.06■■□□□ 1.12
DDX55-213ENST00000545042 DISP1Q96F81 1524 aa22.05■■□□□ 1.12
DDX55-213ENST00000545042 GOLGA3Q08378 1498 aa22.01■■□□□ 1.11
DDX55-213ENST00000545042 KIAA0556O60303 1618 aa22■■□□□ 1.11
DDX55-213ENST00000545042 ADCY10Q96PN6 1610 aa22■■□□□ 1.11
DDX55-213ENST00000545042 KIF21BO75037 1637 aa21.94■■□□□ 1.1
DDX55-213ENST00000545042 UACAQ9BZF9 1416 aa21.93■■□□□ 1.1
DDX55-213ENST00000545042 MAPKBP1O60336 1514 aa21.9■■□□□ 1.1
DDX55-213ENST00000545042 UHRF1BP1LA0JNW5 1464 aa21.9■■□□□ 1.1
DDX55-213ENST00000545042 ABCC2Q92887 1545 aa21.9■■□□□ 1.1
DDX55-213ENST00000545042 ABCC10Q5T3U5 1492 aa21.83■■□□□ 1.09
DDX55-213ENST00000545042 UBTFP17480 764 aaKnown RBP21.83■■□□□ 1.09
DDX55-213ENST00000545042 P3H3Q8IVL6 736 aa21.83■■□□□ 1.09
DDX55-213ENST00000545042 FAM69CQ0P6D2 419 aa21.82■■□□□ 1.08
DDX55-213ENST00000545042 RANGAP1P46060 587 aaPredicted RBP21.81■■□□□ 1.08
DDX55-213ENST00000545042 EHMT2Q96KQ7 1210 aa21.81■■□□□ 1.08
DDX55-213ENST00000545042 SAMD9Q5K651 1589 aa21.8■■□□□ 1.08
DDX55-213ENST00000545042 PLB1Q6P1J6 1458 aa21.8■■□□□ 1.08
DDX55-213ENST00000545042 KIF13AQ9H1H9 1805 aa21.8■■□□□ 1.08
DDX55-213ENST00000545042 KDM5BQ9UGL1 1544 aa21.79■■□□□ 1.08
DDX55-213ENST00000545042 ASXL2Q76L83 1435 aa21.77■■□□□ 1.08
DDX55-213ENST00000545042 DIP2BQ9P265 1576 aa21.77■■□□□ 1.08
DDX55-213ENST00000545042 ABCA8O94911 1581 aa21.76■■□□□ 1.07
DDX55-213ENST00000545042 ZCCHC11Q5TAX3 1644 aaKnown RBP21.74■■□□□ 1.07
DDX55-213ENST00000545042 EFCAB5A4FU69 1503 aa21.72■■□□□ 1.07
DDX55-213ENST00000545042 FHOD3Q2V2M9 1422 aa21.69■■□□□ 1.06
DDX55-213ENST00000545042 WDR7Q9Y4E6 1490 aa21.64■■□□□ 1.06
DDX55-213ENST00000545042 RAPGEF6Q8TEU7 1601 aa21.64■■□□□ 1.05
DDX55-213ENST00000545042 GLI2P10070 1586 aa21.64■■□□□ 1.05
DDX55-213ENST00000545042 EPRSP07814 1512 aaKnown RBP21.63■■□□□ 1.05
DDX55-213ENST00000545042 ARID3CA6NKF2 412 aa21.62■■□□□ 1.05
DDX55-213ENST00000545042 TSPOAP1O95153 1857 aa21.6■■□□□ 1.05
DDX55-213ENST00000545042 ATP10BO94823 1461 aa21.59■■□□□ 1.05
DDX55-213ENST00000545042 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.58■■□□□ 1.05
DDX55-213ENST00000545042 HNRNPUL2Q1KMD3 747 aaKnown RBP21.58■■□□□ 1.05
DDX55-213ENST00000545042 KCNH8Q96L42 1107 aa21.57■■□□□ 1.04
DDX55-213ENST00000545042 ARHGAP35Q9NRY4 1499 aa21.57■■□□□ 1.04
DDX55-213ENST00000545042 NUP153P49790 1475 aaKnown RBP21.55■■□□□ 1.04
DDX55-213ENST00000545042 FMN1Q68DA7 1419 aa21.55■■□□□ 1.04
DDX55-213ENST00000545042 MAP3K4Q9Y6R4 1608 aa21.52■■□□□ 1.04
DDX55-213ENST00000545042 TEX14Q8IWB6 1497 aa21.5■■□□□ 1.03
DDX55-213ENST00000545042 KDM6BO15054 1643 aa21.48■■□□□ 1.03
DDX55-213ENST00000545042 ATP1B4Q9UN42 357 aaPredicted RBP21.48■■□□□ 1.03
DDX55-213ENST00000545042 CD109Q6YHK3 1445 aa21.47■■□□□ 1.03
DDX55-213ENST00000545042 PLEKHD1A6NEE1 506 aa21.47■■□□□ 1.03
DDX55-213ENST00000545042 PPRC1Q5VV67 1664 aaKnown RBP21.47■■□□□ 1.03
DDX55-213ENST00000545042 CFAP43Q8NDM7 1665 aa21.47■■□□□ 1.03
DDX55-213ENST00000545042 HECW1Q76N89 1606 aa21.44■■□□□ 1.02
DDX55-213ENST00000545042 CLIP1P30622 1438 aa21.43■■□□□ 1.02
DDX55-213ENST00000545042 MAGI3Q5TCQ9 1506 aa21.41■■□□□ 1.02
DDX55-213ENST00000545042 CDK13Q14004 1512 aaKnown RBP21.39■■□□□ 1.01
DDX55-213ENST00000545042 ABCA9Q8IUA7 1624 aa21.38■■□□□ 1.01
DDX55-213ENST00000545042 CDK11AQ9UQ88 783 aaPredicted RBP21.37■■□□□ 1.01
DDX55-213ENST00000545042 CASKIN1Q8WXD9 1431 aa21.34■■□□□ 1.01
DDX55-213ENST00000545042 PCF11O94913 1555 aaKnown RBP21.3■■□□□ 1
DDX55-213ENST00000545042 CEP162Q5TB80 1403 aa21.29■■□□□ 1
DDX55-213ENST00000545042 CCDC18Q5T9S5 1454 aa21.29■■□□□ 1
DDX55-213ENST00000545042 COL17A1Q9UMD9 1497 aaPredicted RBP21.29■■□□□ 1
DDX55-213ENST00000545042 PHLDB1Q86UU1 1377 aa21.29■■□□□ 1
DDX55-213ENST00000545042 FYCO1Q9BQS8 1478 aa21.28■■□□□ 1
DDX55-213ENST00000545042 LOC105371045A0A1W2PR82 267 aa21.27■■□□□ 1
DDX55-213ENST00000545042 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.26■□□□□ 0.99
DDX55-213ENST00000545042 NEO1Q92859 1461 aa21.26■□□□□ 0.99
DDX55-213ENST00000545042 TROQ12816 1431 aaPredicted RBP21.24■□□□□ 0.99
DDX55-213ENST00000545042 ARAP3Q8WWN8 1544 aa21.24■□□□□ 0.99
DDX55-213ENST00000545042 LRRIQ1Q96JM4 1722 aa21.23■□□□□ 0.99
DDX55-213ENST00000545042 TTC37Q6PGP7 1564 aa21.22■□□□□ 0.99
DDX55-213ENST00000545042 KIF14Q15058 1648 aa21.21■□□□□ 0.99
DDX55-213ENST00000545042 CFAP74Q9C0B2 1584 aa21.19■□□□□ 0.98
DDX55-213ENST00000545042 AEBP2Q6ZN18 517 aaPredicted RBP21.19■□□□□ 0.98
DDX55-213ENST00000545042 FANCAO15360 1455 aa21.19■□□□□ 0.98
DDX55-213ENST00000545042 PLCH2O75038 1416 aa21.16■□□□□ 0.98
DDX55-213ENST00000545042 AKNAQ7Z591 1439 aa21.15■□□□□ 0.98
DDX55-213ENST00000545042 MYO5CQ9NQX4 1742 aa21.12■□□□□ 0.97
DDX55-213ENST00000545042 RAPGEF3O95398 923 aa21.12■□□□□ 0.97
DDX55-213ENST00000545042 EFCAB2Q5VUJ9 269 aa21.12■□□□□ 0.97
DDX55-213ENST00000545042 DENND4BO75064 1496 aaPredicted RBP21.11■□□□□ 0.97
DDX55-213ENST00000545042 ARHGAP5Q13017 1502 aa21.08■□□□□ 0.96
DDX55-213ENST00000545042 MTUS2Q5JR59 1369 aa21.08■□□□□ 0.96
DDX55-213ENST00000545042 ADGRL1O94910 1474 aa21.07■□□□□ 0.96
DDX55-213ENST00000545042 VPS8Q8N3P4 1428 aa21.04■□□□□ 0.96
DDX55-213ENST00000545042 SCAPERQ9BY12 1400 aa21.04■□□□□ 0.96
DDX55-213ENST00000545042 FRMPD1Q5SYB0 1578 aa21.04■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms