RNA–Protein interactions for RNA: ENST00000545042.1

DDX55-213, Transcript of DEAD-box helicase 55, humanhuman

TSL 5

Gene DDX55, Length 450 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-213ENST00000545042 NISCHQ9Y2I1 1504 aa32.26■■■□□ 2.75
DDX55-213ENST00000545042 CCDC180Q9P1Z9 1646 aa28.72■■■□□ 2.19
DDX55-213ENST00000545042 ABCC9O60706 1549 aa28.23■■■□□ 2.11
DDX55-213ENST00000545042 RB1CC1Q8TDY2 1594 aa27.13■■□□□ 1.93
DDX55-213ENST00000545042 DCAF8L2P0C7V8 631 aa27.08■■□□□ 1.93
DDX55-213ENST00000545042 NACADO15069 1562 aa27.06■■□□□ 1.92
DDX55-213ENST00000545042 MYO15BQ96JP2 1530 aa26.85■■□□□ 1.89
DDX55-213ENST00000545042 ZCCHC6Q5VYS8 1495 aaKnown RBP26.83■■□□□ 1.89
DDX55-213ENST00000545042 DCAF1Q9Y4B6 1507 aa26.69■■□□□ 1.86
DDX55-213ENST00000545042 UNC13AQ9UPW8 1703 aa26.43■■□□□ 1.82
DDX55-213ENST00000545042 PABPN1Q86U42 306 aaKnown RBP eCLIP26.37■■□□□ 1.81
DDX55-213ENST00000545042 BICRAQ9NZM4 1560 aa26.24■■□□□ 1.79
DDX55-213ENST00000545042 SCRIBQ14160 1630 aa26.21■■□□□ 1.79
DDX55-213ENST00000545042 SHROOM4Q9ULL8 1493 aa26.03■■□□□ 1.76
DDX55-213ENST00000545042 DNAJC5BQ9UF47 199 aa25.97■■□□□ 1.75
DDX55-213ENST00000545042 EIF4G1Q04637 1599 aaKnown RBP25.59■■□□□ 1.69
DDX55-213ENST00000545042 CC2D2AQ9P2K1 1620 aa25.52■■□□□ 1.68
DDX55-213ENST00000545042 CECR2Q9BXF3 1484 aa25.39■■□□□ 1.65
DDX55-213ENST00000545042 SMARCA4P51532 1647 aa25.04■■□□□ 1.6
DDX55-213ENST00000545042 BAZ1AQ9NRL2 1556 aaPredicted RBP25.03■■□□□ 1.6
DDX55-213ENST00000545042 NCAPD3P42695 1498 aa24.96■■□□□ 1.59
DDX55-213ENST00000545042 SMARCA2P51531 1590 aa24.95■■□□□ 1.58
DDX55-213ENST00000545042 ATAD2BQ9ULI0 1458 aa24.95■■□□□ 1.58
DDX55-213ENST00000545042 MROH2BQ7Z745 1585 aa24.84■■□□□ 1.57
DDX55-213ENST00000545042 HMGXB3Q12766 1538 aa24.82■■□□□ 1.56
DDX55-213ENST00000545042 PEG3Q9GZU2 1588 aa24.8■■□□□ 1.56
DDX55-213ENST00000545042 BAZ1BQ9UIG0 1483 aaKnown RBP24.77■■□□□ 1.56
DDX55-213ENST00000545042 WIZO95785 1651 aa24.56■■□□□ 1.52
DDX55-213ENST00000545042 RSF1Q96T23 1441 aaPredicted RBP24.52■■□□□ 1.52
DDX55-213ENST00000545042 ERCC6Q03468 1493 aa24.39■■□□□ 1.5
DDX55-213ENST00000545042 NESP48681 1621 aa24.36■■□□□ 1.49
DDX55-213ENST00000545042 LAMC3Q9Y6N6 1575 aa24.33■■□□□ 1.49
DDX55-213ENST00000545042 TOP2AP11388 1531 aaKnown RBP24.32■■□□□ 1.48
DDX55-213ENST00000545042 CADPSQ9ULU8 1353 aa24.24■■□□□ 1.47
DDX55-213ENST00000545042 PDS5BQ9NTI5 1447 aa24.2■■□□□ 1.46
DDX55-213ENST00000545042 CUX2O14529 1486 aa24.15■■□□□ 1.46
DDX55-213ENST00000545042 KIF21AQ7Z4S6 1674 aa24.08■■□□□ 1.44
DDX55-213ENST00000545042 CFTRP13569 1480 aa24.06■■□□□ 1.44
DDX55-213ENST00000545042 CCDC88BA6NC98 1476 aa24.03■■□□□ 1.44
DDX55-213ENST00000545042 THOC2Q8NI27 1593 aaKnown RBP24.02■■□□□ 1.44
DDX55-213ENST00000545042 FANCD2Q9BXW9 1451 aa23.96■■□□□ 1.43
DDX55-213ENST00000545042 CEP164Q9UPV0 1460 aa23.95■■□□□ 1.42
DDX55-213ENST00000545042 MRC2Q9UBG0 1479 aa23.94■■□□□ 1.42
DDX55-213ENST00000545042 SUPT5HO00267 1087 aaKnown RBP23.88■■□□□ 1.41
DDX55-213ENST00000545042 PRDM2Q13029 1718 aa23.85■■□□□ 1.41
DDX55-213ENST00000545042 WDR62O43379 1518 aa23.84■■□□□ 1.41
DDX55-213ENST00000545042 URB2Q14146 1524 aaKnown RBP23.69■■□□□ 1.38
DDX55-213ENST00000545042 ABCC8Q09428 1581 aa23.59■■□□□ 1.37
DDX55-213ENST00000545042 TOPBP1Q92547 1522 aa23.55■■□□□ 1.36
DDX55-213ENST00000545042 DNAJC5Q9H3Z4 198 aa23.54■■□□□ 1.36
DDX55-213ENST00000545042 DNMBPQ6XZF7 1577 aa23.52■■□□□ 1.36
DDX55-213ENST00000545042 IFT140Q96RY7 1462 aa23.46■■□□□ 1.35
DDX55-213ENST00000545042 POLA1P09884 1462 aaPredicted RBP23.34■■□□□ 1.33
DDX55-213ENST00000545042 CUX1P39880 1505 aa23.32■■□□□ 1.32
DDX55-213ENST00000545042 ZNF608Q9ULD9 1512 aaPredicted RBP23.32■■□□□ 1.32
DDX55-213ENST00000545042 SOGA1O94964 1423 aa23.28■■□□□ 1.32
DDX55-213ENST00000545042 TARBP1Q13395 1621 aaKnown RBP23.28■■□□□ 1.32
DDX55-213ENST00000545042 FGD5Q6ZNL6 1462 aa23.27■■□□□ 1.32
DDX55-213ENST00000545042 RAD54L2Q9Y4B4 1467 aa23.24■■□□□ 1.31
DDX55-213ENST00000545042 EIF4G3O43432 1585 aaKnown RBP23.23■■□□□ 1.31
DDX55-213ENST00000545042 AQRO60306 1485 aaKnown RBP eCLIP23.19■■□□□ 1.31e-6■■■■■ 42.9
DDX55-213ENST00000545042 WRNQ14191 1432 aaPredicted RBP eCLIP23.16■■□□□ 1.3
DDX55-213ENST00000545042 OSCARQ8IYS5 282 aa23.16■■□□□ 1.3
DDX55-213ENST00000545042 TDRD9Q8NDG6 1382 aaKnown RBP23.14■■□□□ 1.29
DDX55-213ENST00000545042 WDR97A6NE52 1622 aa23.13■■□□□ 1.29
DDX55-213ENST00000545042 TOP2BQ02880 1626 aa23.1■■□□□ 1.29
DDX55-213ENST00000545042 BIVM-ERCC5R4GMW8 1640 aa23.08■■□□□ 1.29
DDX55-213ENST00000545042 SYNJ1O43426 1573 aa23.06■■□□□ 1.28
DDX55-213ENST00000545042 ABCA10Q8WWZ4 1543 aa23.05■■□□□ 1.28
DDX55-213ENST00000545042 GRIN2BQ13224 1484 aa23.02■■□□□ 1.28
DDX55-213ENST00000545042 GAPVD1Q14C86 1478 aa23■■□□□ 1.27
DDX55-213ENST00000545042 FBLN2P98095 1184 aa23■■□□□ 1.27
DDX55-213ENST00000545042 SNAPC4Q5SXM2 1469 aa22.98■■□□□ 1.27
DDX55-213ENST00000545042 MAGI1Q96QZ7 1491 aaPredicted RBP22.97■■□□□ 1.27
DDX55-213ENST00000545042 CHD1O14646 1710 aa22.95■■□□□ 1.26
DDX55-213ENST00000545042 ABCA5Q8WWZ7 1642 aa22.93■■□□□ 1.26
DDX55-213ENST00000545042 CHMP7Q8WUX9 453 aaPredicted RBP22.92■■□□□ 1.26
DDX55-213ENST00000545042 PBRM1Q86U86 1689 aa22.92■■□□□ 1.26
DDX55-213ENST00000545042 SYNJ2O15056 1496 aa22.87■■□□□ 1.25
DDX55-213ENST00000545042 ERICH3Q5RHP9 1530 aa22.77■■□□□ 1.24
DDX55-213ENST00000545042 TRIM41Q8WV44 630 aa22.75■■□□□ 1.23
DDX55-213ENST00000545042 ADAMTS12P58397 1594 aa22.74■■□□□ 1.23
DDX55-213ENST00000545042 RIMBP3CA6NJZ7 1639 aa22.74■■□□□ 1.23
DDX55-213ENST00000545042 RIMBP3BA6NNM3 1639 aa22.74■■□□□ 1.23
DDX55-213ENST00000545042 RIMBP3Q9UFD9 1639 aa22.74■■□□□ 1.23
DDX55-213ENST00000545042 FHAD1B1AJZ9 1412 aa22.74■■□□□ 1.23
DDX55-213ENST00000545042 ARHGEF11O15085 1522 aa22.73■■□□□ 1.23
DDX55-213ENST00000545042 KIF27Q86VH2 1401 aa22.71■■□□□ 1.23
DDX55-213ENST00000545042 GRIN2AQ12879 1464 aa22.7■■□□□ 1.22
DDX55-213ENST00000545042 CLASP1Q7Z460 1538 aa22.7■■□□□ 1.22
DDX55-213ENST00000545042 IGF1RP08069 1367 aa22.6■■□□□ 1.21
DDX55-213ENST00000545042 NUP160Q12769 1436 aa22.59■■□□□ 1.21
DDX55-213ENST00000545042 CYB5RLQ6IPT4 315 aa22.57■■□□□ 1.2
DDX55-213ENST00000545042 CEP170Q5SW79 1584 aa22.57■■□□□ 1.2
DDX55-213ENST00000545042 CUL7Q14999 1698 aa22.55■■□□□ 1.2
DDX55-213ENST00000545042 ARAP1Q96P48 1450 aa22.53■■□□□ 1.2
DDX55-213ENST00000545042 CARMIL1Q5VZK9 1371 aa22.49■■□□□ 1.19
DDX55-213ENST00000545042 SHROOM2Q13796 1616 aa22.42■■□□□ 1.18
DDX55-213ENST00000545042 JPH4Q96JJ6 628 aa22.4■■□□□ 1.18
DDX55-213ENST00000545042 RUSC2Q8N2Y8 1516 aa22.4■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms