RNA–Protein interactions for RNA: ENST00000544504.5

YBX3-215, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 583 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-215ENST00000544504 ABCC10Q5T3U5 1492 aa15.84■□□□□ 0.13
YBX3-215ENST00000544504 FHAD1B1AJZ9 1412 aa15.83■□□□□ 0.12
YBX3-215ENST00000544504 PRG4Q92954 1404 aaPredicted RBP15.82■□□□□ 0.12
YBX3-215ENST00000544504 NPM1P06748 294 aaKnown RBP eCLIP15.81■□□□□ 0.12
YBX3-215ENST00000544504 MAPKBP1O60336 1514 aa15.78■□□□□ 0.12
YBX3-215ENST00000544504 JPH4Q96JJ6 628 aa15.77■□□□□ 0.12
YBX3-215ENST00000544504 KDM6BO15054 1643 aa15.76■□□□□ 0.11
YBX3-215ENST00000544504 DIP2BQ9P265 1576 aa15.75■□□□□ 0.11
YBX3-215ENST00000544504 ERICH3Q5RHP9 1530 aa15.73■□□□□ 0.11
YBX3-215ENST00000544504 EEA1Q15075 1411 aa15.72■□□□□ 0.11
YBX3-215ENST00000544504 ADCY10Q96PN6 1610 aa15.67■□□□□ 0.1
YBX3-215ENST00000544504 KIF27Q86VH2 1401 aa15.66■□□□□ 0.1
YBX3-215ENST00000544504 RUSC2Q8N2Y8 1516 aa15.64■□□□□ 0.09
YBX3-215ENST00000544504 ADGRL1O94910 1474 aa15.59■□□□□ 0.09
YBX3-215ENST00000544504 TSPOAP1O95153 1857 aa15.58■□□□□ 0.08
YBX3-215ENST00000544504 CSRNP3Q8WYN3 585 aa15.56■□□□□ 0.08
YBX3-215ENST00000544504 KIAA0586Q9BVV6 1533 aa15.55■□□□□ 0.08
YBX3-215ENST00000544504 FAM9AQ8IZU1 332 aaPredicted RBP15.54■□□□□ 0.08
YBX3-215ENST00000544504 HECW2Q9P2P5 1572 aa15.53■□□□□ 0.08
YBX3-215ENST00000544504 PTPRGP23470 1445 aa15.51■□□□□ 0.07
YBX3-215ENST00000544504 PLB1Q6P1J6 1458 aa15.5■□□□□ 0.07
YBX3-215ENST00000544504 GLI2P10070 1586 aa15.49■□□□□ 0.07
YBX3-215ENST00000544504 ABCC2Q92887 1545 aa15.49■□□□□ 0.07
YBX3-215ENST00000544504 ASXL2Q76L83 1435 aa15.48■□□□□ 0.07
YBX3-215ENST00000544504 IGF1RP08069 1367 aa15.48■□□□□ 0.07
YBX3-215ENST00000544504 CUL7Q14999 1698 aa15.47■□□□□ 0.07
YBX3-215ENST00000544504 PPRC1Q5VV67 1664 aaKnown RBP15.46■□□□□ 0.07
YBX3-215ENST00000544504 KIF21BO75037 1637 aa15.45■□□□□ 0.06
YBX3-215ENST00000544504 COL17A1Q9UMD9 1497 aaPredicted RBP15.45■□□□□ 0.06
YBX3-215ENST00000544504 TNIKQ9UKE5 1360 aa15.44■□□□□ 0.06
YBX3-215ENST00000544504 CARMIL2Q6F5E8 1435 aa15.43■□□□□ 0.06
YBX3-215ENST00000544504 PRXQ9BXM0 1461 aa15.43■□□□□ 0.06
YBX3-215ENST00000544504 TTBK1Q5TCY1 1321 aaPredicted RBP15.43■□□□□ 0.06
YBX3-215ENST00000544504 CARMIL1Q5VZK9 1371 aa15.42■□□□□ 0.06
YBX3-215ENST00000544504 GOLGA3Q08378 1498 aa15.41■□□□□ 0.06
YBX3-215ENST00000544504 TEX14Q8IWB6 1497 aa15.41■□□□□ 0.06
YBX3-215ENST00000544504 FBXO41Q8TF61 875 aa15.41■□□□□ 0.06
YBX3-215ENST00000544504 UHRF1BP1LA0JNW5 1464 aa15.4■□□□□ 0.06
YBX3-215ENST00000544504 RAPGEF2Q9Y4G8 1499 aa15.4■□□□□ 0.06
YBX3-215ENST00000544504 EPRSP07814 1512 aaKnown RBP15.38■□□□□ 0.05
YBX3-215ENST00000544504 UACAQ9BZF9 1416 aa15.37■□□□□ 0.05
YBX3-215ENST00000544504 MAP3K4Q9Y6R4 1608 aa15.36■□□□□ 0.05
YBX3-215ENST00000544504 KDM5BQ9UGL1 1544 aa15.33■□□□□ 0.05
YBX3-215ENST00000544504 UBTFP17480 764 aaKnown RBP15.32■□□□□ 0.04
YBX3-215ENST00000544504 LOC105371045A0A1W2PR82 267 aa15.31■□□□□ 0.04
YBX3-215ENST00000544504 IQGAP2Q13576 1575 aa15.29■□□□□ 0.04
YBX3-215ENST00000544504 DISP1Q96F81 1524 aa15.27■□□□□ 0.04
YBX3-215ENST00000544504 ZCCHC11Q5TAX3 1644 aaKnown RBP15.25■□□□□ 0.03
YBX3-215ENST00000544504 EHMT2Q96KQ7 1210 aa15.25■□□□□ 0.03
YBX3-215ENST00000544504 WDR7Q9Y4E6 1490 aa15.25■□□□□ 0.03
YBX3-215ENST00000544504 MAGI3Q5TCQ9 1506 aa15.23■□□□□ 0.03
YBX3-215ENST00000544504 CD109Q6YHK3 1445 aa15.22■□□□□ 0.03
YBX3-215ENST00000544504 CTTNBP2Q8WZ74 1663 aa15.21■□□□□ 0.03
YBX3-215ENST00000544504 UGGT2Q9NYU1 1516 aa15.19■□□□□ 0.02
YBX3-215ENST00000544504 CEP162Q5TB80 1403 aa15.17■□□□□ 0.02
YBX3-215ENST00000544504 CFAP43Q8NDM7 1665 aa15.16■□□□□ 0.02
YBX3-215ENST00000544504 PTPRMP28827 1452 aa15.16■□□□□ 0.02
YBX3-215ENST00000544504 KIAA0556O60303 1618 aa15.16■□□□□ 0.02
YBX3-215ENST00000544504 KCNH8Q96L42 1107 aa15.15■□□□□ 0.02
YBX3-215ENST00000544504 LMTK3Q96Q04 1460 aa15.14■□□□□ 0.01
YBX3-215ENST00000544504 CLIP1P30622 1438 aa15.14■□□□□ 0.01
YBX3-215ENST00000544504 ARAP3Q8WWN8 1544 aa15.13■□□□□ 0.01
YBX3-215ENST00000544504 EFCAB5A4FU69 1503 aa15.11■□□□□ 0.01
YBX3-215ENST00000544504 PCF11O94913 1555 aaKnown RBP15.1■□□□□ 0.01
YBX3-215ENST00000544504 ADAMTSL3P82987 1691 aa15.09■□□□□ 0.01
YBX3-215ENST00000544504 PHLDB1Q86UU1 1377 aa15.09■□□□□ 0.01
YBX3-215ENST00000544504 ABCA8O94911 1581 aa15.06■□□□□ 0
YBX3-215ENST00000544504 ARHGAP35Q9NRY4 1499 aa15.03■□□□□ -0
YBX3-215ENST00000544504 RANGAP1P46060 587 aaPredicted RBP15.03■□□□□ -0
YBX3-215ENST00000544504 SAMD9Q5K651 1589 aa15.02■□□□□ -0
YBX3-215ENST00000544504 ARID4BQ4LE39 1312 aaPredicted RBP15.02■□□□□ -0
YBX3-215ENST00000544504 RAPGEF3O95398 923 aa15.01□□□□□ -0.01
YBX3-215ENST00000544504 SOCS7O14512 581 aa15□□□□□ -0.01
YBX3-215ENST00000544504 CERKQ8TCT0 537 aa15□□□□□ -0.01
YBX3-215ENST00000544504 BCORL1Q5H9F3 1711 aa15□□□□□ -0.01
YBX3-215ENST00000544504 MADDQ8WXG6 1647 aa14.99□□□□□ -0.01
YBX3-215ENST00000544504 NEO1Q92859 1461 aa14.98□□□□□ -0.01
YBX3-215ENST00000544504 FMN1Q68DA7 1419 aa14.97□□□□□ -0.01
YBX3-215ENST00000544504 VPS8Q8N3P4 1428 aa14.97□□□□□ -0.01
YBX3-215ENST00000544504 ABCA9Q8IUA7 1624 aa14.96□□□□□ -0.01
YBX3-215ENST00000544504 HSPA2P54652 639 aa14.96□□□□□ -0.01
YBX3-215ENST00000544504 DISP3Q9P2K9 1392 aa14.96□□□□□ -0.02
YBX3-215ENST00000544504 ILDR2Q71H61 639 aa14.95□□□□□ -0.02
YBX3-215ENST00000544504 ATP10BO94823 1461 aa14.95□□□□□ -0.02
YBX3-215ENST00000544504 FHOD3Q2V2M9 1422 aa14.93□□□□□ -0.02
YBX3-215ENST00000544504 ARID3CA6NKF2 412 aa14.93□□□□□ -0.02
YBX3-215ENST00000544504 P3H3Q8IVL6 736 aa14.93□□□□□ -0.02
YBX3-215ENST00000544504 FRMPD1Q5SYB0 1578 aa14.92□□□□□ -0.02
YBX3-215ENST00000544504 RIMS1Q86UR5 1692 aaKnown RBP14.9□□□□□ -0.02
YBX3-215ENST00000544504 ARHGEF40Q8TER5 1519 aa14.9□□□□□ -0.02
YBX3-215ENST00000544504 POGZQ7Z3K3 1410 aa14.9□□□□□ -0.02
YBX3-215ENST00000544504 APLP2Q06481 763 aa14.88□□□□□ -0.03
YBX3-215ENST00000544504 FYCO1Q9BQS8 1478 aa14.88□□□□□ -0.03
YBX3-215ENST00000544504 CASKIN1Q8WXD9 1431 aa14.87□□□□□ -0.03
YBX3-215ENST00000544504 PLPPR3Q6T4P5 718 aa14.87□□□□□ -0.03
YBX3-215ENST00000544504 FANCAO15360 1455 aa14.87□□□□□ -0.03
YBX3-215ENST00000544504 DENND4BO75064 1496 aaPredicted RBP14.87□□□□□ -0.03
YBX3-215ENST00000544504 AKNAQ7Z591 1439 aa14.85□□□□□ -0.03
YBX3-215ENST00000544504 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.84□□□□□ -0.03
YBX3-215ENST00000544504 HNRNPUL2Q1KMD3 747 aaKnown RBP14.84□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 103 ms