RNA–Protein interactions for RNA: ENST00000544504.5

YBX3-215, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 583 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-215ENST00000544504 NISCHQ9Y2I1 1504 aa22.15■■□□□ 1.14
YBX3-215ENST00000544504 ABCC9O60706 1549 aa20.56■□□□□ 0.88
YBX3-215ENST00000544504 CCDC180Q9P1Z9 1646 aa20.06■□□□□ 0.8
YBX3-215ENST00000544504 DNAJC5BQ9UF47 199 aa19.74■□□□□ 0.75
YBX3-215ENST00000544504 RB1CC1Q8TDY2 1594 aa19.37■□□□□ 0.69
YBX3-215ENST00000544504 NACADO15069 1562 aa19.12■□□□□ 0.65
YBX3-215ENST00000544504 PABPN1Q86U42 306 aaKnown RBP eCLIP19.07■□□□□ 0.645e-7■□□□□ 10.2
YBX3-215ENST00000544504 DCAF8L2P0C7V8 631 aa18.91■□□□□ 0.62
YBX3-215ENST00000544504 UNC13AQ9UPW8 1703 aa18.81■□□□□ 0.6
YBX3-215ENST00000544504 BICRAQ9NZM4 1560 aa18.79■□□□□ 0.6
YBX3-215ENST00000544504 MYO15BQ96JP2 1530 aa18.73■□□□□ 0.59
YBX3-215ENST00000544504 CECR2Q9BXF3 1484 aa18.6■□□□□ 0.57
YBX3-215ENST00000544504 SHROOM4Q9ULL8 1493 aa18.58■□□□□ 0.56
YBX3-215ENST00000544504 CC2D2AQ9P2K1 1620 aa18.54■□□□□ 0.56
YBX3-215ENST00000544504 DNAJC5Q9H3Z4 198 aa18.54■□□□□ 0.56
YBX3-215ENST00000544504 ZCCHC6Q5VYS8 1495 aaKnown RBP18.45■□□□□ 0.54
YBX3-215ENST00000544504 EIF4G1Q04637 1599 aaKnown RBP18.39■□□□□ 0.53
YBX3-215ENST00000544504 DCAF1Q9Y4B6 1507 aa18.3■□□□□ 0.52
YBX3-215ENST00000544504 SCRIBQ14160 1630 aa18.23■□□□□ 0.51
YBX3-215ENST00000544504 CUX2O14529 1486 aa17.96■□□□□ 0.47
YBX3-215ENST00000544504 ERCC6Q03468 1493 aa17.82■□□□□ 0.44
YBX3-215ENST00000544504 NCAPD3P42695 1498 aa17.68■□□□□ 0.42
YBX3-215ENST00000544504 ATAD2BQ9ULI0 1458 aa17.53■□□□□ 0.4
YBX3-215ENST00000544504 NESP48681 1621 aa17.5■□□□□ 0.39
YBX3-215ENST00000544504 TRIM41Q8WV44 630 aa17.49■□□□□ 0.39
YBX3-215ENST00000544504 HMGXB3Q12766 1538 aa17.48■□□□□ 0.39
YBX3-215ENST00000544504 SMARCA2P51531 1590 aa17.46■□□□□ 0.39
YBX3-215ENST00000544504 THOC2Q8NI27 1593 aaKnown RBP17.43■□□□□ 0.38
YBX3-215ENST00000544504 SMARCA4P51532 1647 aa17.35■□□□□ 0.37
YBX3-215ENST00000544504 BAZ1BQ9UIG0 1483 aaKnown RBP17.34■□□□□ 0.37
YBX3-215ENST00000544504 LAMC3Q9Y6N6 1575 aa17.34■□□□□ 0.37
YBX3-215ENST00000544504 PDS5BQ9NTI5 1447 aa17.3■□□□□ 0.36
YBX3-215ENST00000544504 BAZ1AQ9NRL2 1556 aaPredicted RBP17.23■□□□□ 0.35
YBX3-215ENST00000544504 PEG3Q9GZU2 1588 aa17.23■□□□□ 0.35
YBX3-215ENST00000544504 KIF21AQ7Z4S6 1674 aa17.22■□□□□ 0.35
YBX3-215ENST00000544504 MRC2Q9UBG0 1479 aa17.14■□□□□ 0.33
YBX3-215ENST00000544504 CADPSQ9ULU8 1353 aa17.12■□□□□ 0.33
YBX3-215ENST00000544504 WDR62O43379 1518 aa17.11■□□□□ 0.33
YBX3-215ENST00000544504 OSCARQ8IYS5 282 aa17.08■□□□□ 0.32
YBX3-215ENST00000544504 MROH2BQ7Z745 1585 aa17.03■□□□□ 0.32
YBX3-215ENST00000544504 CEP164Q9UPV0 1460 aa16.98■□□□□ 0.31
YBX3-215ENST00000544504 RSF1Q96T23 1441 aaPredicted RBP16.94■□□□□ 0.3
YBX3-215ENST00000544504 FANCD2Q9BXW9 1451 aa16.91■□□□□ 0.3
YBX3-215ENST00000544504 SUPT5HO00267 1087 aaKnown RBP16.86■□□□□ 0.29
YBX3-215ENST00000544504 RIMBP3CA6NJZ7 1639 aa16.84■□□□□ 0.29
YBX3-215ENST00000544504 RIMBP3BA6NNM3 1639 aa16.84■□□□□ 0.29
YBX3-215ENST00000544504 RIMBP3Q9UFD9 1639 aa16.84■□□□□ 0.29
YBX3-215ENST00000544504 CFTRP13569 1480 aa16.81■□□□□ 0.28
YBX3-215ENST00000544504 URB2Q14146 1524 aaKnown RBP16.78■□□□□ 0.28
YBX3-215ENST00000544504 ARHGEF11O15085 1522 aa16.77■□□□□ 0.28
YBX3-215ENST00000544504 WIZO95785 1651 aa16.77■□□□□ 0.28
YBX3-215ENST00000544504 CYB5RLQ6IPT4 315 aa16.69■□□□□ 0.26
YBX3-215ENST00000544504 TOP2AP11388 1531 aaKnown RBP16.69■□□□□ 0.26
YBX3-215ENST00000544504 TRHP20396 242 aaPredicted RBP16.68■□□□□ 0.26
YBX3-215ENST00000544504 IFT140Q96RY7 1462 aa16.67■□□□□ 0.26
YBX3-215ENST00000544504 ZNF608Q9ULD9 1512 aaPredicted RBP16.65■□□□□ 0.26
YBX3-215ENST00000544504 AEBP2Q6ZN18 517 aaPredicted RBP16.57■□□□□ 0.24
YBX3-215ENST00000544504 ARAP1Q96P48 1450 aa16.56■□□□□ 0.24
YBX3-215ENST00000544504 EIF4G3O43432 1585 aaKnown RBP16.52■□□□□ 0.24
YBX3-215ENST00000544504 TOPBP1Q92547 1522 aa16.51■□□□□ 0.23
YBX3-215ENST00000544504 ABCC8Q09428 1581 aa16.49■□□□□ 0.23
YBX3-215ENST00000544504 PRDM2Q13029 1718 aa16.49■□□□□ 0.23
YBX3-215ENST00000544504 FBLN2P98095 1184 aa16.46■□□□□ 0.23
YBX3-215ENST00000544504 CCDC88BA6NC98 1476 aa16.46■□□□□ 0.23
YBX3-215ENST00000544504 AQRO60306 1485 aaKnown RBP eCLIP16.45■□□□□ 0.225e-7■■■■■ 28.1
YBX3-215ENST00000544504 CHD1O14646 1710 aa16.45■□□□□ 0.22
YBX3-215ENST00000544504 DNMBPQ6XZF7 1577 aa16.41■□□□□ 0.22
YBX3-215ENST00000544504 TARBP1Q13395 1621 aaKnown RBP16.39■□□□□ 0.21
YBX3-215ENST00000544504 POLA1P09884 1462 aaPredicted RBP16.32■□□□□ 0.2
YBX3-215ENST00000544504 CLASP1Q7Z460 1538 aa16.31■□□□□ 0.2
YBX3-215ENST00000544504 TDRD9Q8NDG6 1382 aaKnown RBP16.28■□□□□ 0.2
YBX3-215ENST00000544504 SYNJ1O43426 1573 aa16.27■□□□□ 0.2
YBX3-215ENST00000544504 CHMP7Q8WUX9 453 aaPredicted RBP16.27■□□□□ 0.2
YBX3-215ENST00000544504 SNAPC4Q5SXM2 1469 aa16.27■□□□□ 0.19
YBX3-215ENST00000544504 RAD54L2Q9Y4B4 1467 aa16.25■□□□□ 0.19
YBX3-215ENST00000544504 SOGA1O94964 1423 aa16.25■□□□□ 0.19
YBX3-215ENST00000544504 WDR97A6NE52 1622 aa16.23■□□□□ 0.19
YBX3-215ENST00000544504 MAGI1Q96QZ7 1491 aaPredicted RBP16.22■□□□□ 0.19
YBX3-215ENST00000544504 GAPVD1Q14C86 1478 aa16.2■□□□□ 0.18
YBX3-215ENST00000544504 SYNJ2O15056 1496 aa16.18■□□□□ 0.18
YBX3-215ENST00000544504 GRIN2BQ13224 1484 aa16.17■□□□□ 0.18
YBX3-215ENST00000544504 FGD5Q6ZNL6 1462 aa16.14■□□□□ 0.17
YBX3-215ENST00000544504 CUX1P39880 1505 aa16.04■□□□□ 0.16
YBX3-215ENST00000544504 CHIC1Q5VXU3 224 aa16.02■□□□□ 0.16
YBX3-215ENST00000544504 WRNQ14191 1432 aaPredicted RBP eCLIP16■□□□□ 0.15
YBX3-215ENST00000544504 ERCC6L2Q5T890 1561 aa15.99■□□□□ 0.15
YBX3-215ENST00000544504 PBRM1Q86U86 1689 aa15.99■□□□□ 0.15
YBX3-215ENST00000544504 GRIN2AQ12879 1464 aa15.96■□□□□ 0.14
YBX3-215ENST00000544504 ABCA10Q8WWZ4 1543 aa15.94■□□□□ 0.14
YBX3-215ENST00000544504 CEP170Q5SW79 1584 aa15.94■□□□□ 0.14
YBX3-215ENST00000544504 ABCA5Q8WWZ7 1642 aa15.94■□□□□ 0.14
YBX3-215ENST00000544504 NUP160Q12769 1436 aa15.93■□□□□ 0.14
YBX3-215ENST00000544504 TOP2BQ02880 1626 aa15.9■□□□□ 0.14
YBX3-215ENST00000544504 BIVM-ERCC5R4GMW8 1640 aa15.9■□□□□ 0.14
YBX3-215ENST00000544504 KIF13AQ9H1H9 1805 aa15.89■□□□□ 0.13
YBX3-215ENST00000544504 ILDR1Q86SU0 546 aaPredicted RBP15.89■□□□□ 0.13
YBX3-215ENST00000544504 SHROOM2Q13796 1616 aa15.88■□□□□ 0.13
YBX3-215ENST00000544504 ADAMTS12P58397 1594 aa15.85■□□□□ 0.13
YBX3-215ENST00000544504 KDM4FA0A1W2PPD8 638 aa15.85■□□□□ 0.13
YBX3-215ENST00000544504 FAM69CQ0P6D2 419 aa15.85■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 81.5 ms