RNA–Protein interactions for RNA: ENST00000541259.1

DDX55-208, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 460 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-208ENST00000541259 ADAMTS12P58397 1594 aa15.37■□□□□ 0.05
DDX55-208ENST00000541259 EHMT2Q96KQ7 1210 aa15.37■□□□□ 0.05
DDX55-208ENST00000541259 MAGI1Q96QZ7 1491 aaPredicted RBP15.36■□□□□ 0.05
DDX55-208ENST00000541259 PRXQ9BXM0 1461 aa15.35■□□□□ 0.05
DDX55-208ENST00000541259 SLC4A1APQ9BWU0 796 aaKnown RBP15.34■□□□□ 0.05
DDX55-208ENST00000541259 CHD1O14646 1710 aa15.34■□□□□ 0.05
DDX55-208ENST00000541259 FHAD1B1AJZ9 1412 aa15.34■□□□□ 0.05
DDX55-208ENST00000541259 KIF21BO75037 1637 aa15.33■□□□□ 0.04
DDX55-208ENST00000541259 RNF216Q9NWF9 866 aaPredicted RBP15.32■□□□□ 0.04
DDX55-208ENST00000541259 RAPGEF2Q9Y4G8 1499 aa15.32■□□□□ 0.04
DDX55-208ENST00000541259 LOC105371045A0A1W2PR82 267 aa15.31■□□□□ 0.04
DDX55-208ENST00000541259 SYNJ2O15056 1496 aa15.31■□□□□ 0.04
DDX55-208ENST00000541259 FBLN2P98095 1184 aa15.3■□□□□ 0.04
DDX55-208ENST00000541259 CHMP7Q8WUX9 453 aaPredicted RBP15.29■□□□□ 0.04
DDX55-208ENST00000541259 GRIN2AQ12879 1464 aa15.27■□□□□ 0.03
DDX55-208ENST00000541259 GOLGA3Q08378 1498 aa15.26■□□□□ 0.03
DDX55-208ENST00000541259 UBTFP17480 764 aaKnown RBP15.22■□□□□ 0.03
DDX55-208ENST00000541259 CEP170Q5SW79 1584 aa15.21■□□□□ 0.03
DDX55-208ENST00000541259 CTTNBP2Q8WZ74 1663 aa15.21■□□□□ 0.03
DDX55-208ENST00000541259 NUP160Q12769 1436 aa15.17■□□□□ 0.02
DDX55-208ENST00000541259 HOXD11P31277 338 aaPredicted RBP15.16■□□□□ 0.02
DDX55-208ENST00000541259 TNIKQ9UKE5 1360 aa15.14■□□□□ 0.01
DDX55-208ENST00000541259 OSCARQ8IYS5 282 aa15.12■□□□□ 0.01
DDX55-208ENST00000541259 KIAA0586Q9BVV6 1533 aa15.12■□□□□ 0.01
DDX55-208ENST00000541259 IQGAP2Q13576 1575 aa15.11■□□□□ 0.01
DDX55-208ENST00000541259 RANGAP1P46060 587 aaPredicted RBP15.11■□□□□ 0.01
DDX55-208ENST00000541259 CLASP1Q7Z460 1538 aa15.11■□□□□ 0.01
DDX55-208ENST00000541259 JPH4Q96JJ6 628 aa15.05■□□□□ -0
DDX55-208ENST00000541259 SHROOM2Q13796 1616 aa15.04■□□□□ -0
DDX55-208ENST00000541259 CEP162Q5TB80 1403 aa15.04■□□□□ -0
DDX55-208ENST00000541259 UGGT2Q9NYU1 1516 aa15.02■□□□□ -0
DDX55-208ENST00000541259 CLIP1P30622 1438 aa15□□□□□ -0.01
DDX55-208ENST00000541259 SAMD9Q5K651 1589 aa15□□□□□ -0.01
DDX55-208ENST00000541259 ERCC6L2Q5T890 1561 aa15□□□□□ -0.01
DDX55-208ENST00000541259 P3H3Q8IVL6 736 aa15□□□□□ -0.01
DDX55-208ENST00000541259 DISP1Q96F81 1524 aa14.99□□□□□ -0.01
DDX55-208ENST00000541259 ARHGAP35Q9NRY4 1499 aa14.99□□□□□ -0.01
DDX55-208ENST00000541259 PRG4Q92954 1404 aaPredicted RBP14.99□□□□□ -0.01
DDX55-208ENST00000541259 KIAA0556O60303 1618 aa14.97□□□□□ -0.01
DDX55-208ENST00000541259 EFCAB5A4FU69 1503 aa14.96□□□□□ -0.02
DDX55-208ENST00000541259 ARAP1Q96P48 1450 aa14.94□□□□□ -0.02
DDX55-208ENST00000541259 FHOD3Q2V2M9 1422 aa14.93□□□□□ -0.02
DDX55-208ENST00000541259 CARMIL2Q6F5E8 1435 aa14.92□□□□□ -0.02
DDX55-208ENST00000541259 TTBK1Q5TCY1 1321 aaPredicted RBP14.92□□□□□ -0.02
DDX55-208ENST00000541259 RIMBP3CA6NJZ7 1639 aa14.88□□□□□ -0.03
DDX55-208ENST00000541259 RIMBP3BA6NNM3 1639 aa14.88□□□□□ -0.03
DDX55-208ENST00000541259 RIMBP3Q9UFD9 1639 aa14.88□□□□□ -0.03
DDX55-208ENST00000541259 ARHGEF11O15085 1522 aa14.88□□□□□ -0.03
DDX55-208ENST00000541259 DCAF8L1A6NGE4 600 aa14.86□□□□□ -0.03
DDX55-208ENST00000541259 PTPRGP23470 1445 aa14.83□□□□□ -0.03
DDX55-208ENST00000541259 VPS8Q8N3P4 1428 aa14.81□□□□□ -0.04
DDX55-208ENST00000541259 PCF11O94913 1555 aaKnown RBP14.81□□□□□ -0.04
DDX55-208ENST00000541259 FMN1Q68DA7 1419 aa14.8□□□□□ -0.04
DDX55-208ENST00000541259 PLB1Q6P1J6 1458 aa14.8□□□□□ -0.04
DDX55-208ENST00000541259 RAPGEF6Q8TEU7 1601 aa14.79□□□□□ -0.04
DDX55-208ENST00000541259 LRRIQ1Q96JM4 1722 aa14.79□□□□□ -0.04
DDX55-208ENST00000541259 DNAJC5Q9H3Z4 198 aa14.79□□□□□ -0.04
DDX55-208ENST00000541259 ABCA8O94911 1581 aa14.78□□□□□ -0.04
DDX55-208ENST00000541259 ATP1B4Q9UN42 357 aaPredicted RBP14.77□□□□□ -0.05
DDX55-208ENST00000541259 CASKIN1Q8WXD9 1431 aa14.75□□□□□ -0.05
DDX55-208ENST00000541259 CYB5RLQ6IPT4 315 aa14.75□□□□□ -0.05
DDX55-208ENST00000541259 UACAQ9BZF9 1416 aa14.75□□□□□ -0.05
DDX55-208ENST00000541259 ADCY10Q96PN6 1610 aa14.74□□□□□ -0.05
DDX55-208ENST00000541259 ARID3CA6NKF2 412 aa14.73□□□□□ -0.05
DDX55-208ENST00000541259 FYCO1Q9BQS8 1478 aa14.73□□□□□ -0.05
DDX55-208ENST00000541259 HECW1Q76N89 1606 aa14.73□□□□□ -0.05
DDX55-208ENST00000541259 NUP153P49790 1475 aaKnown RBP14.72□□□□□ -0.05
DDX55-208ENST00000541259 FOXD4L1Q9NU39 408 aa14.72□□□□□ -0.05
DDX55-208ENST00000541259 ABCC2Q92887 1545 aa14.71□□□□□ -0.05
DDX55-208ENST00000541259 UHRF1BP1LA0JNW5 1464 aa14.69□□□□□ -0.06
DDX55-208ENST00000541259 CDK13Q14004 1512 aaKnown RBP14.69□□□□□ -0.06
DDX55-208ENST00000541259 EPRSP07814 1512 aaKnown RBP14.68□□□□□ -0.06
DDX55-208ENST00000541259 ZCCHC11Q5TAX3 1644 aaKnown RBP14.67□□□□□ -0.06
DDX55-208ENST00000541259 ATP10BO94823 1461 aa14.67□□□□□ -0.06
DDX55-208ENST00000541259 CFAP43Q8NDM7 1665 aa14.66□□□□□ -0.06
DDX55-208ENST00000541259 ZBTB22O15209 634 aa14.66□□□□□ -0.06
DDX55-208ENST00000541259 TIAM1Q13009 1591 aa14.64□□□□□ -0.07
DDX55-208ENST00000541259 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.64□□□□□ -0.07
DDX55-208ENST00000541259 HNRNPUL2Q1KMD3 747 aaKnown RBP14.64□□□□□ -0.07
DDX55-208ENST00000541259 PPARGC1BQ86YN6 1023 aaKnown RBP14.64□□□□□ -0.07
DDX55-208ENST00000541259 KDM5BQ9UGL1 1544 aa14.64□□□□□ -0.07
DDX55-208ENST00000541259 CCDC18Q5T9S5 1454 aa14.63□□□□□ -0.07
DDX55-208ENST00000541259 APLP2Q06481 763 aa14.63□□□□□ -0.07
DDX55-208ENST00000541259 KANK4Q5T7N3 995 aaPredicted RBP14.62□□□□□ -0.07
DDX55-208ENST00000541259 MAP3K1Q13233 1512 aa14.61□□□□□ -0.07
DDX55-208ENST00000541259 MAGI3Q5TCQ9 1506 aa14.61□□□□□ -0.07
DDX55-208ENST00000541259 SLC4A2P04920 1241 aa14.59□□□□□ -0.07
DDX55-208ENST00000541259 NPM1P06748 294 aaKnown RBP eCLIP14.58□□□□□ -0.08
DDX55-208ENST00000541259 LRRC9Q6ZRR7 1453 aa14.57□□□□□ -0.08
DDX55-208ENST00000541259 POTEDQ86YR6 584 aa14.57□□□□□ -0.08
DDX55-208ENST00000541259 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.56□□□□□ -0.087e-7■■■■□ 21
DDX55-208ENST00000541259 PLEKHD1A6NEE1 506 aa14.55□□□□□ -0.08
DDX55-208ENST00000541259 CDK11AQ9UQ88 783 aaPredicted RBP14.54□□□□□ -0.08
DDX55-208ENST00000541259 MTUS2Q5JR59 1369 aa14.54□□□□□ -0.08
DDX55-208ENST00000541259 ASXL2Q76L83 1435 aa14.54□□□□□ -0.08
DDX55-208ENST00000541259 KIF14Q15058 1648 aa14.53□□□□□ -0.08
DDX55-208ENST00000541259 EHBP1L1Q8N3D4 1523 aa14.52□□□□□ -0.08
DDX55-208ENST00000541259 TROQ12816 1431 aaPredicted RBP14.52□□□□□ -0.08
DDX55-208ENST00000541259 KCNH8Q96L42 1107 aa14.52□□□□□ -0.09
DDX55-208ENST00000541259 MAPKBP1O60336 1514 aa14.51□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms