RNA–Protein interactions for RNA: ENST00000541169.1

VPS33A-205, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 4

Gene VPS33A, Length 594 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-205ENST00000541169 RIMBP3CA6NJZ7 1639 aa31■■■□□ 2.55
VPS33A-205ENST00000541169 RIMBP3BA6NNM3 1639 aa31■■■□□ 2.55
VPS33A-205ENST00000541169 RIMBP3Q9UFD9 1639 aa31■■■□□ 2.55
VPS33A-205ENST00000541169 FAM9AQ8IZU1 332 aaPredicted RBP31■■■□□ 2.55
VPS33A-205ENST00000541169 KIF21BO75037 1637 aa30.98■■■□□ 2.55
VPS33A-205ENST00000541169 JPH4Q96JJ6 628 aa30.98■■■□□ 2.55
VPS33A-205ENST00000541169 IQGAP2Q13576 1575 aa30.95■■■□□ 2.54
VPS33A-205ENST00000541169 CTTNBP2Q8WZ74 1663 aa30.92■■■□□ 2.54
VPS33A-205ENST00000541169 PRG4Q92954 1404 aaPredicted RBP30.87■■■□□ 2.53
VPS33A-205ENST00000541169 CARMIL2Q6F5E8 1435 aa30.81■■■□□ 2.52
VPS33A-205ENST00000541169 GOLGA3Q08378 1498 aa30.81■■■□□ 2.52
VPS33A-205ENST00000541169 UGGT2Q9NYU1 1516 aa30.8■■■□□ 2.52
VPS33A-205ENST00000541169 ARAP1Q96P48 1450 aa30.78■■■□□ 2.52
VPS33A-205ENST00000541169 ERCC6L2Q5T890 1561 aa30.72■■■□□ 2.51
VPS33A-205ENST00000541169 CYB5RLQ6IPT4 315 aa30.71■■■□□ 2.51
VPS33A-205ENST00000541169 UBTFP17480 764 aaKnown RBP30.67■■■□□ 2.5
VPS33A-205ENST00000541169 DISP1Q96F81 1524 aa30.65■■■□□ 2.5
VPS33A-205ENST00000541169 TNIKQ9UKE5 1360 aa30.64■■■□□ 2.5
VPS33A-205ENST00000541169 KIAA0556O60303 1618 aa30.62■■■□□ 2.49
VPS33A-205ENST00000541169 PTPRGP23470 1445 aa30.57■■■□□ 2.48
VPS33A-205ENST00000541169 EFCAB5A4FU69 1503 aa30.52■■■□□ 2.48
VPS33A-205ENST00000541169 SAMD9Q5K651 1589 aa30.52■■■□□ 2.48
VPS33A-205ENST00000541169 EHMT2Q96KQ7 1210 aa30.47■■■□□ 2.47
VPS33A-205ENST00000541169 UACAQ9BZF9 1416 aa30.39■■■□□ 2.46
VPS33A-205ENST00000541169 UHRF1BP1LA0JNW5 1464 aa30.39■■■□□ 2.46
VPS33A-205ENST00000541169 NPM1P06748 294 aaKnown RBP eCLIP30.36■■■□□ 2.45
VPS33A-205ENST00000541169 RANGAP1P46060 587 aaPredicted RBP30.35■■■□□ 2.45
VPS33A-205ENST00000541169 ADCY10Q96PN6 1610 aa30.34■■■□□ 2.45
VPS33A-205ENST00000541169 TTBK1Q5TCY1 1321 aaPredicted RBP30.33■■■□□ 2.45
VPS33A-205ENST00000541169 ABCC2Q92887 1545 aa30.32■■■□□ 2.44
VPS33A-205ENST00000541169 P3H3Q8IVL6 736 aa30.31■■■□□ 2.44
VPS33A-205ENST00000541169 ARHGAP35Q9NRY4 1499 aa30.28■■■□□ 2.44
VPS33A-205ENST00000541169 ABCA8O94911 1581 aa30.27■■■□□ 2.44
VPS33A-205ENST00000541169 FHOD3Q2V2M9 1422 aa30.26■■■□□ 2.43
VPS33A-205ENST00000541169 FMN1Q68DA7 1419 aa30.25■■■□□ 2.43
VPS33A-205ENST00000541169 PLB1Q6P1J6 1458 aa30.24■■■□□ 2.43
VPS33A-205ENST00000541169 CLIP1P30622 1438 aa30.23■■■□□ 2.43
VPS33A-205ENST00000541169 KDM5BQ9UGL1 1544 aa30.21■■■□□ 2.43
VPS33A-205ENST00000541169 MAPKBP1O60336 1514 aa30.2■■■□□ 2.42
VPS33A-205ENST00000541169 LOC105371045A0A1W2PR82 267 aa30.18■■■□□ 2.42
VPS33A-205ENST00000541169 RAPGEF6Q8TEU7 1601 aa30.18■■■□□ 2.42
VPS33A-205ENST00000541169 CEP162Q5TB80 1403 aa30.14■■■□□ 2.42
VPS33A-205ENST00000541169 ZCCHC11Q5TAX3 1644 aaKnown RBP30.1■■■□□ 2.41
VPS33A-205ENST00000541169 NUP153P49790 1475 aaKnown RBP30.03■■■□□ 2.4
VPS33A-205ENST00000541169 HECW1Q76N89 1606 aa30.02■■■□□ 2.4
VPS33A-205ENST00000541169 ASXL2Q76L83 1435 aa30.02■■■□□ 2.4
VPS33A-205ENST00000541169 TRHP20396 242 aaPredicted RBP30.01■■■□□ 2.39
VPS33A-205ENST00000541169 ATP10BO94823 1461 aa30■■■□□ 2.39
VPS33A-205ENST00000541169 ABCC10Q5T3U5 1492 aa29.99■■■□□ 2.39
VPS33A-205ENST00000541169 CASKIN1Q8WXD9 1431 aa29.98■■■□□ 2.39
VPS33A-205ENST00000541169 FYCO1Q9BQS8 1478 aa29.94■■■□□ 2.38
VPS33A-205ENST00000541169 WDR7Q9Y4E6 1490 aa29.94■■■□□ 2.38
VPS33A-205ENST00000541169 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP29.91■■■□□ 2.38
VPS33A-205ENST00000541169 HNRNPUL2Q1KMD3 747 aaKnown RBP29.91■■■□□ 2.38
VPS33A-205ENST00000541169 DIP2BQ9P265 1576 aa29.9■■■□□ 2.38
VPS33A-205ENST00000541169 CCDC18Q5T9S5 1454 aa29.89■■■□□ 2.38
VPS33A-205ENST00000541169 CDK11AQ9UQ88 783 aaPredicted RBP29.89■■■□□ 2.38
VPS33A-205ENST00000541169 EPRSP07814 1512 aaKnown RBP29.89■■■□□ 2.38
VPS33A-205ENST00000541169 ATP1B4Q9UN42 357 aaPredicted RBP29.88■■■□□ 2.37
VPS33A-205ENST00000541169 PCF11O94913 1555 aaKnown RBP29.88■■■□□ 2.37
VPS33A-205ENST00000541169 GLI2P10070 1586 aa29.88■■■□□ 2.37
VPS33A-205ENST00000541169 KIF13AQ9H1H9 1805 aa29.87■■■□□ 2.37
VPS33A-205ENST00000541169 FAM69CQ0P6D2 419 aa29.87■■■□□ 2.37
VPS33A-205ENST00000541169 PLEKHD1A6NEE1 506 aa29.86■■■□□ 2.37
VPS33A-205ENST00000541169 ARID3CA6NKF2 412 aa29.84■■■□□ 2.37
VPS33A-205ENST00000541169 VPS8Q8N3P4 1428 aa29.8■■■□□ 2.36
VPS33A-205ENST00000541169 CDK13Q14004 1512 aaKnown RBP29.78■■■□□ 2.36
VPS33A-205ENST00000541169 KCNH8Q96L42 1107 aa29.74■■■□□ 2.35
VPS33A-205ENST00000541169 LRRIQ1Q96JM4 1722 aa29.73■■■□□ 2.35
VPS33A-205ENST00000541169 CFAP43Q8NDM7 1665 aa29.72■■■□□ 2.35
VPS33A-205ENST00000541169 MAP3K4Q9Y6R4 1608 aa29.71■■■□□ 2.35
VPS33A-205ENST00000541169 ABCA9Q8IUA7 1624 aa29.67■■■□□ 2.34
VPS33A-205ENST00000541169 TROQ12816 1431 aaPredicted RBP29.67■■■□□ 2.34
VPS33A-205ENST00000541169 TEX14Q8IWB6 1497 aa29.65■■■□□ 2.34
VPS33A-205ENST00000541169 CD109Q6YHK3 1445 aa29.63■■■□□ 2.33
VPS33A-205ENST00000541169 MAP3K1Q13233 1512 aa29.61■■■□□ 2.33
VPS33A-205ENST00000541169 MAGI3Q5TCQ9 1506 aa29.61■■■□□ 2.33
VPS33A-205ENST00000541169 KIF14Q15058 1648 aa29.6■■■□□ 2.33
VPS33A-205ENST00000541169 TSPOAP1O95153 1857 aa29.58■■■□□ 2.33
VPS33A-205ENST00000541169 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP29.55■■■□□ 2.32
VPS33A-205ENST00000541169 MTUS2Q5JR59 1369 aa29.55■■■□□ 2.32
VPS33A-205ENST00000541169 APLP2Q06481 763 aa29.55■■■□□ 2.32
VPS33A-205ENST00000541169 TIAM1Q13009 1591 aa29.54■■■□□ 2.32
VPS33A-205ENST00000541169 PPRC1Q5VV67 1664 aaKnown RBP29.53■■■□□ 2.32
VPS33A-205ENST00000541169 PHLDB1Q86UU1 1377 aa29.53■■■□□ 2.32
VPS33A-205ENST00000541169 EHBP1L1Q8N3D4 1523 aa29.5■■■□□ 2.31
VPS33A-205ENST00000541169 ARAP3Q8WWN8 1544 aa29.48■■■□□ 2.31
VPS33A-205ENST00000541169 TTC37Q6PGP7 1564 aa29.47■■■□□ 2.31
VPS33A-205ENST00000541169 CFAP74Q9C0B2 1584 aa29.45■■■□□ 2.31
VPS33A-205ENST00000541169 NEO1Q92859 1461 aa29.45■■■□□ 2.31
VPS33A-205ENST00000541169 MYO5CQ9NQX4 1742 aa29.45■■■□□ 2.3
VPS33A-205ENST00000541169 PLCH2O75038 1416 aa29.45■■■□□ 2.3
VPS33A-205ENST00000541169 LRRC9Q6ZRR7 1453 aa29.41■■■□□ 2.3
VPS33A-205ENST00000541169 KDM6BO15054 1643 aa29.38■■■□□ 2.29
VPS33A-205ENST00000541169 SUPT6HQ7KZ85 1726 aaKnown RBP29.38■■■□□ 2.29
VPS33A-205ENST00000541169 FANCAO15360 1455 aa29.37■■■□□ 2.29
VPS33A-205ENST00000541169 EFCAB2Q5VUJ9 269 aa29.36■■■□□ 2.29
VPS33A-205ENST00000541169 CCNB3Q8WWL7 1395 aa29.33■■■□□ 2.29
VPS33A-205ENST00000541169 PREX2Q70Z35 1606 aa29.33■■■□□ 2.29
VPS33A-205ENST00000541169 ARHGAP5Q13017 1502 aa29.3■■■□□ 2.28
Retrieved 100 of 20,778 RNA–protein pairs in 67.6 ms