RNA–Protein interactions for RNA: ENST00000541169.1

VPS33A-205, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 4

Gene VPS33A, Length 594 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-205ENST00000541169 NISCHQ9Y2I1 1504 aa44.97■■■■■ 4.79
VPS33A-205ENST00000541169 CCDC180Q9P1Z9 1646 aa39.96■■■■□ 3.99
VPS33A-205ENST00000541169 ABCC9O60706 1549 aa38.61■■■■□ 3.77
VPS33A-205ENST00000541169 ZCCHC6Q5VYS8 1495 aaKnown RBP37.52■■■■□ 3.6
VPS33A-205ENST00000541169 NACADO15069 1562 aa37.51■■■■□ 3.59
VPS33A-205ENST00000541169 RB1CC1Q8TDY2 1594 aa37.45■■■■□ 3.59
VPS33A-205ENST00000541169 MYO15BQ96JP2 1530 aa37.45■■■■□ 3.59
VPS33A-205ENST00000541169 DCAF1Q9Y4B6 1507 aa37.36■■■■□ 3.57
VPS33A-205ENST00000541169 DCAF8L2P0C7V8 631 aa37.35■■■■□ 3.57
VPS33A-205ENST00000541169 UNC13AQ9UPW8 1703 aa36.47■■■■□ 3.43
VPS33A-205ENST00000541169 SCRIBQ14160 1630 aa36.3■■■■□ 3.4
VPS33A-205ENST00000541169 BICRAQ9NZM4 1560 aa36.17■■■■□ 3.38
VPS33A-205ENST00000541169 SHROOM4Q9ULL8 1493 aa36.09■■■■□ 3.37
VPS33A-205ENST00000541169 PABPN1Q86U42 306 aaKnown RBP eCLIP36.08■■■■□ 3.37
VPS33A-205ENST00000541169 EIF4G1Q04637 1599 aaKnown RBP35.24■■■■□ 3.23
VPS33A-205ENST00000541169 DNAJC5BQ9UF47 199 aa35.07■■■■□ 3.2
VPS33A-205ENST00000541169 CC2D2AQ9P2K1 1620 aa35■■■■□ 3.19
VPS33A-205ENST00000541169 BAZ1AQ9NRL2 1556 aaPredicted RBP34.91■■■■□ 3.18
VPS33A-205ENST00000541169 CECR2Q9BXF3 1484 aa34.88■■■■□ 3.17
VPS33A-205ENST00000541169 SMARCA4P51532 1647 aa34.82■■■■□ 3.16
VPS33A-205ENST00000541169 SMARCA2P51531 1590 aa34.63■■■■□ 3.13
VPS33A-205ENST00000541169 MROH2BQ7Z745 1585 aa34.58■■■■□ 3.13
VPS33A-205ENST00000541169 NCAPD3P42695 1498 aa34.56■■■■□ 3.12
VPS33A-205ENST00000541169 ATAD2BQ9ULI0 1458 aa34.56■■■■□ 3.12
VPS33A-205ENST00000541169 PEG3Q9GZU2 1588 aa34.56■■■■□ 3.12
VPS33A-205ENST00000541169 HMGXB3Q12766 1538 aa34.44■■■■□ 3.1
VPS33A-205ENST00000541169 RSF1Q96T23 1441 aaPredicted RBP34.33■■■■□ 3.09
VPS33A-205ENST00000541169 BAZ1BQ9UIG0 1483 aaKnown RBP34.33■■■■□ 3.09
VPS33A-205ENST00000541169 WIZO95785 1651 aa34.22■■■■□ 3.07
VPS33A-205ENST00000541169 TOP2AP11388 1531 aaKnown RBP33.97■■■■□ 3.03
VPS33A-205ENST00000541169 LAMC3Q9Y6N6 1575 aa33.63■■■□□ 2.97
VPS33A-205ENST00000541169 SUPT5HO00267 1087 aaKnown RBP33.6■■■□□ 2.97
VPS33A-205ENST00000541169 CADPSQ9ULU8 1353 aa33.55■■■□□ 2.96
VPS33A-205ENST00000541169 CCDC88BA6NC98 1476 aa33.51■■■□□ 2.96
VPS33A-205ENST00000541169 NESP48681 1621 aa33.46■■■□□ 2.95
VPS33A-205ENST00000541169 PDS5BQ9NTI5 1447 aa33.41■■■□□ 2.94
VPS33A-205ENST00000541169 CFTRP13569 1480 aa33.41■■■□□ 2.94
VPS33A-205ENST00000541169 ERCC6Q03468 1493 aa33.36■■■□□ 2.93
VPS33A-205ENST00000541169 PRDM2Q13029 1718 aa33.22■■■□□ 2.91
VPS33A-205ENST00000541169 KIF21AQ7Z4S6 1674 aa33.13■■■□□ 2.89
VPS33A-205ENST00000541169 FANCD2Q9BXW9 1451 aa33.13■■■□□ 2.89
VPS33A-205ENST00000541169 CEP164Q9UPV0 1460 aa33.1■■■□□ 2.89
VPS33A-205ENST00000541169 THOC2Q8NI27 1593 aaKnown RBP32.98■■■□□ 2.87
VPS33A-205ENST00000541169 CUX2O14529 1486 aa32.98■■■□□ 2.87
VPS33A-205ENST00000541169 MRC2Q9UBG0 1479 aa32.98■■■□□ 2.87
VPS33A-205ENST00000541169 WDR62O43379 1518 aa32.86■■■□□ 2.85
VPS33A-205ENST00000541169 ABCC8Q09428 1581 aa32.82■■■□□ 2.84
VPS33A-205ENST00000541169 URB2Q14146 1524 aaKnown RBP32.72■■■□□ 2.83
VPS33A-205ENST00000541169 DNMBPQ6XZF7 1577 aa32.66■■■□□ 2.82
VPS33A-205ENST00000541169 TOPBP1Q92547 1522 aa32.62■■■□□ 2.81
VPS33A-205ENST00000541169 CUX1P39880 1505 aa32.44■■■□□ 2.78
VPS33A-205ENST00000541169 WRNQ14191 1432 aaPredicted RBP eCLIP32.42■■■□□ 2.78
VPS33A-205ENST00000541169 IFT140Q96RY7 1462 aa32.42■■■□□ 2.78
VPS33A-205ENST00000541169 POLA1P09884 1462 aaPredicted RBP32.35■■■□□ 2.77
VPS33A-205ENST00000541169 TOP2BQ02880 1626 aa32.33■■■□□ 2.77
VPS33A-205ENST00000541169 BIVM-ERCC5R4GMW8 1640 aa32.32■■■□□ 2.76
VPS33A-205ENST00000541169 FGD5Q6ZNL6 1462 aa32.31■■■□□ 2.76
VPS33A-205ENST00000541169 SOGA1O94964 1423 aa32.26■■■□□ 2.76
VPS33A-205ENST00000541169 TARBP1Q13395 1621 aaKnown RBP32.24■■■□□ 2.75
VPS33A-205ENST00000541169 SYNJ1O43426 1573 aa32.23■■■□□ 2.75
VPS33A-205ENST00000541169 WDR97A6NE52 1622 aa32.18■■■□□ 2.74
VPS33A-205ENST00000541169 RAD54L2Q9Y4B4 1467 aa32.13■■■□□ 2.73
VPS33A-205ENST00000541169 ZNF608Q9ULD9 1512 aaPredicted RBP32.09■■■□□ 2.73
VPS33A-205ENST00000541169 ABCA10Q8WWZ4 1543 aa32.08■■■□□ 2.73
VPS33A-205ENST00000541169 EIF4G3O43432 1585 aaKnown RBP32.05■■■□□ 2.72
VPS33A-205ENST00000541169 AQRO60306 1485 aaKnown RBP eCLIP31.97■■■□□ 2.71
VPS33A-205ENST00000541169 TDRD9Q8NDG6 1382 aaKnown RBP31.96■■■□□ 2.71
VPS33A-205ENST00000541169 GAPVD1Q14C86 1478 aa31.91■■■□□ 2.7
VPS33A-205ENST00000541169 GRIN2BQ13224 1484 aa31.89■■■□□ 2.7
VPS33A-205ENST00000541169 ABCA5Q8WWZ7 1642 aa31.89■■■□□ 2.7
VPS33A-205ENST00000541169 TRIM41Q8WV44 630 aa31.85■■■□□ 2.69
VPS33A-205ENST00000541169 MAGI1Q96QZ7 1491 aaPredicted RBP31.8■■■□□ 2.68
VPS33A-205ENST00000541169 PBRM1Q86U86 1689 aa31.79■■■□□ 2.68
VPS33A-205ENST00000541169 KIF27Q86VH2 1401 aa31.76■■■□□ 2.68
VPS33A-205ENST00000541169 ERICH3Q5RHP9 1530 aa31.75■■■□□ 2.67
VPS33A-205ENST00000541169 SNAPC4Q5SXM2 1469 aa31.72■■■□□ 2.67
VPS33A-205ENST00000541169 OSCARQ8IYS5 282 aa31.65■■■□□ 2.66
VPS33A-205ENST00000541169 SYNJ2O15056 1496 aa31.65■■■□□ 2.66
VPS33A-205ENST00000541169 CHMP7Q8WUX9 453 aaPredicted RBP31.59■■■□□ 2.65
VPS33A-205ENST00000541169 CHD1O14646 1710 aa31.58■■■□□ 2.65
VPS33A-205ENST00000541169 FHAD1B1AJZ9 1412 aa31.58■■■□□ 2.65
VPS33A-205ENST00000541169 CHIC1Q5VXU3 224 aa31.56■■■□□ 2.64
VPS33A-205ENST00000541169 ADAMTS12P58397 1594 aa31.56■■■□□ 2.64
VPS33A-205ENST00000541169 FBLN2P98095 1184 aa31.55■■■□□ 2.64
VPS33A-205ENST00000541169 DNAJC5Q9H3Z4 198 aa31.55■■■□□ 2.64
VPS33A-205ENST00000541169 IGF1RP08069 1367 aa31.53■■■□□ 2.64
VPS33A-205ENST00000541169 CUL7Q14999 1698 aa31.52■■■□□ 2.64
VPS33A-205ENST00000541169 GRIN2AQ12879 1464 aa31.44■■■□□ 2.62
VPS33A-205ENST00000541169 EEA1Q15075 1411 aa31.43■■■□□ 2.62
VPS33A-205ENST00000541169 CARMIL1Q5VZK9 1371 aa31.37■■■□□ 2.61
VPS33A-205ENST00000541169 RUSC2Q8N2Y8 1516 aa31.34■■■□□ 2.61
VPS33A-205ENST00000541169 NUP160Q12769 1436 aa31.3■■■□□ 2.6
VPS33A-205ENST00000541169 CLASP1Q7Z460 1538 aa31.27■■■□□ 2.6
VPS33A-205ENST00000541169 RAPGEF2Q9Y4G8 1499 aa31.24■■■□□ 2.59
VPS33A-205ENST00000541169 CSRNP3Q8WYN3 585 aa31.23■■■□□ 2.59
VPS33A-205ENST00000541169 CEP170Q5SW79 1584 aa31.21■■■□□ 2.59
VPS33A-205ENST00000541169 PRXQ9BXM0 1461 aa31.17■■■□□ 2.58
VPS33A-205ENST00000541169 KIAA0586Q9BVV6 1533 aa31.11■■■□□ 2.57
VPS33A-205ENST00000541169 ARHGEF11O15085 1522 aa31.04■■■□□ 2.56
VPS33A-205ENST00000541169 SHROOM2Q13796 1616 aa31.03■■■□□ 2.56
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms