RNA–Protein interactions for RNA: ENST00000540230.5

UBE3B-212, Transcript of ubiquitin protein ligase E3B, humanhuman

TSL 1 (best) BASIC

Gene UBE3B, Length 1,541 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-212ENST00000540230 JPH4Q96JJ6 628 aa25.6■■□□□ 1.69
UBE3B-212ENST00000540230 KIAA0586Q9BVV6 1533 aa25.59■■□□□ 1.69
UBE3B-212ENST00000540230 PRG4Q92954 1404 aaPredicted RBP25.58■■□□□ 1.69
UBE3B-212ENST00000540230 RAPGEF2Q9Y4G8 1499 aa25.54■■□□□ 1.68
UBE3B-212ENST00000540230 IQGAP2Q13576 1575 aa25.45■■□□□ 1.66
UBE3B-212ENST00000540230 PRXQ9BXM0 1461 aa25.45■■□□□ 1.66
UBE3B-212ENST00000540230 CHIC1Q5VXU3 224 aa25.42■■□□□ 1.66
UBE3B-212ENST00000540230 CTTNBP2Q8WZ74 1663 aa25.35■■□□□ 1.65
UBE3B-212ENST00000540230 CSRNP3Q8WYN3 585 aa25.34■■□□□ 1.65
UBE3B-212ENST00000540230 EEA1Q15075 1411 aa25.31■■□□□ 1.64
UBE3B-212ENST00000540230 DISP1Q96F81 1524 aa25.31■■□□□ 1.64
UBE3B-212ENST00000540230 UGGT2Q9NYU1 1516 aa25.3■■□□□ 1.64
UBE3B-212ENST00000540230 FAM9AQ8IZU1 332 aaPredicted RBP25.3■■□□□ 1.64
UBE3B-212ENST00000540230 TRHP20396 242 aaPredicted RBP25.29■■□□□ 1.64
UBE3B-212ENST00000540230 CARMIL2Q6F5E8 1435 aa25.28■■□□□ 1.64
UBE3B-212ENST00000540230 ADCY10Q96PN6 1610 aa25.26■■□□□ 1.63
UBE3B-212ENST00000540230 TTBK1Q5TCY1 1321 aaPredicted RBP25.25■■□□□ 1.63
UBE3B-212ENST00000540230 TNIKQ9UKE5 1360 aa25.24■■□□□ 1.63
UBE3B-212ENST00000540230 KIAA0556O60303 1618 aa25.24■■□□□ 1.63
UBE3B-212ENST00000540230 PTPRGP23470 1445 aa25.23■■□□□ 1.63
UBE3B-212ENST00000540230 KIF21BO75037 1637 aa25.14■■□□□ 1.61
UBE3B-212ENST00000540230 GOLGA3Q08378 1498 aa25.09■■□□□ 1.61
UBE3B-212ENST00000540230 MAPKBP1O60336 1514 aa25.08■■□□□ 1.61
UBE3B-212ENST00000540230 UACAQ9BZF9 1416 aa25.07■■□□□ 1.6
UBE3B-212ENST00000540230 NPM1P06748 294 aaKnown RBP eCLIP25.07■■□□□ 1.6
UBE3B-212ENST00000540230 KIF13AQ9H1H9 1805 aa25.06■■□□□ 1.6
UBE3B-212ENST00000540230 UHRF1BP1LA0JNW5 1464 aa25.06■■□□□ 1.6
UBE3B-212ENST00000540230 ABCC2Q92887 1545 aa25.05■■□□□ 1.6
UBE3B-212ENST00000540230 EHMT2Q96KQ7 1210 aa25.02■■□□□ 1.6
UBE3B-212ENST00000540230 SAMD9Q5K651 1589 aa25.02■■□□□ 1.6
UBE3B-212ENST00000540230 PLB1Q6P1J6 1458 aa25.01■■□□□ 1.59
UBE3B-212ENST00000540230 P3H3Q8IVL6 736 aa25■■□□□ 1.59
UBE3B-212ENST00000540230 ABCC10Q5T3U5 1492 aa24.98■■□□□ 1.59
UBE3B-212ENST00000540230 DIP2BQ9P265 1576 aa24.98■■□□□ 1.59
UBE3B-212ENST00000540230 RANGAP1P46060 587 aaPredicted RBP24.96■■□□□ 1.59
UBE3B-212ENST00000540230 ABCA8O94911 1581 aa24.96■■□□□ 1.59
UBE3B-212ENST00000540230 KDM5BQ9UGL1 1544 aa24.95■■□□□ 1.59
UBE3B-212ENST00000540230 ZCCHC11Q5TAX3 1644 aaKnown RBP24.94■■□□□ 1.58
UBE3B-212ENST00000540230 FAM69CQ0P6D2 419 aa24.92■■□□□ 1.58
UBE3B-212ENST00000540230 ASXL2Q76L83 1435 aa24.92■■□□□ 1.58
UBE3B-212ENST00000540230 UBTFP17480 764 aaKnown RBP24.88■■□□□ 1.57
UBE3B-212ENST00000540230 FHOD3Q2V2M9 1422 aa24.88■■□□□ 1.57
UBE3B-212ENST00000540230 EFCAB5A4FU69 1503 aa24.83■■□□□ 1.57
UBE3B-212ENST00000540230 RAPGEF6Q8TEU7 1601 aa24.8■■□□□ 1.56
UBE3B-212ENST00000540230 TSPOAP1O95153 1857 aa24.79■■□□□ 1.56
UBE3B-212ENST00000540230 ARID3CA6NKF2 412 aa24.78■■□□□ 1.56
UBE3B-212ENST00000540230 EPRSP07814 1512 aaKnown RBP24.77■■□□□ 1.56
UBE3B-212ENST00000540230 GLI2P10070 1586 aa24.77■■□□□ 1.56
UBE3B-212ENST00000540230 WDR7Q9Y4E6 1490 aa24.76■■□□□ 1.55
UBE3B-212ENST00000540230 ATP10BO94823 1461 aa24.75■■□□□ 1.55
UBE3B-212ENST00000540230 ARHGAP35Q9NRY4 1499 aa24.75■■□□□ 1.55
UBE3B-212ENST00000540230 PPRC1Q5VV67 1664 aaKnown RBP24.72■■□□□ 1.55
UBE3B-212ENST00000540230 NUP153P49790 1475 aaKnown RBP24.72■■□□□ 1.55
UBE3B-212ENST00000540230 MAP3K4Q9Y6R4 1608 aa24.69■■□□□ 1.54
UBE3B-212ENST00000540230 KCNH8Q96L42 1107 aa24.63■■□□□ 1.53
UBE3B-212ENST00000540230 KDM6BO15054 1643 aa24.59■■□□□ 1.53
UBE3B-212ENST00000540230 FMN1Q68DA7 1419 aa24.58■■□□□ 1.53
UBE3B-212ENST00000540230 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.57■■□□□ 1.52
UBE3B-212ENST00000540230 HNRNPUL2Q1KMD3 747 aaKnown RBP24.57■■□□□ 1.52
UBE3B-212ENST00000540230 CFAP43Q8NDM7 1665 aa24.57■■□□□ 1.52
UBE3B-212ENST00000540230 CDK13Q14004 1512 aaKnown RBP24.56■■□□□ 1.52
UBE3B-212ENST00000540230 CD109Q6YHK3 1445 aa24.53■■□□□ 1.52
UBE3B-212ENST00000540230 HECW1Q76N89 1606 aa24.52■■□□□ 1.52
UBE3B-212ENST00000540230 ABCA9Q8IUA7 1624 aa24.51■■□□□ 1.51
UBE3B-212ENST00000540230 TEX14Q8IWB6 1497 aa24.51■■□□□ 1.51
UBE3B-212ENST00000540230 CLIP1P30622 1438 aa24.51■■□□□ 1.51
UBE3B-212ENST00000540230 MAGI3Q5TCQ9 1506 aa24.49■■□□□ 1.51
UBE3B-212ENST00000540230 COL17A1Q9UMD9 1497 aaPredicted RBP24.49■■□□□ 1.51
UBE3B-212ENST00000540230 LRRIQ1Q96JM4 1722 aa24.49■■□□□ 1.51
UBE3B-212ENST00000540230 ATP1B4Q9UN42 357 aaPredicted RBP24.48■■□□□ 1.51
UBE3B-212ENST00000540230 PCF11O94913 1555 aaKnown RBP24.47■■□□□ 1.51
UBE3B-212ENST00000540230 PLEKHD1A6NEE1 506 aa24.44■■□□□ 1.5
UBE3B-212ENST00000540230 LOC105371045A0A1W2PR82 267 aa24.41■■□□□ 1.5
UBE3B-212ENST00000540230 CASKIN1Q8WXD9 1431 aa24.4■■□□□ 1.5
UBE3B-212ENST00000540230 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP24.39■■□□□ 1.49
UBE3B-212ENST00000540230 CEP162Q5TB80 1403 aa24.39■■□□□ 1.49
UBE3B-212ENST00000540230 TTC37Q6PGP7 1564 aa24.38■■□□□ 1.49
UBE3B-212ENST00000540230 FYCO1Q9BQS8 1478 aa24.34■■□□□ 1.49
UBE3B-212ENST00000540230 KIF14Q15058 1648 aa24.32■■□□□ 1.48
UBE3B-212ENST00000540230 CCDC18Q5T9S5 1454 aa24.3■■□□□ 1.48
UBE3B-212ENST00000540230 TROQ12816 1431 aaPredicted RBP24.3■■□□□ 1.48
UBE3B-212ENST00000540230 ARAP3Q8WWN8 1544 aa24.28■■□□□ 1.48
UBE3B-212ENST00000540230 NEO1Q92859 1461 aa24.28■■□□□ 1.48
UBE3B-212ENST00000540230 CDK11AQ9UQ88 783 aaPredicted RBP24.27■■□□□ 1.48
UBE3B-212ENST00000540230 FANCAO15360 1455 aa24.22■■□□□ 1.47
UBE3B-212ENST00000540230 PHLDB1Q86UU1 1377 aa24.22■■□□□ 1.47
UBE3B-212ENST00000540230 MYO5CQ9NQX4 1742 aa24.21■■□□□ 1.47
UBE3B-212ENST00000540230 FRMPD1Q5SYB0 1578 aa24.2■■□□□ 1.47
UBE3B-212ENST00000540230 PLCH2O75038 1416 aa24.2■■□□□ 1.46
UBE3B-212ENST00000540230 CFAP74Q9C0B2 1584 aa24.19■■□□□ 1.46
UBE3B-212ENST00000540230 AKNAQ7Z591 1439 aa24.18■■□□□ 1.46
UBE3B-212ENST00000540230 RAPGEF3O95398 923 aa24.18■■□□□ 1.46
UBE3B-212ENST00000540230 RICTORQ6R327 1708 aa24.14■■□□□ 1.45
UBE3B-212ENST00000540230 KDM4FA0A1W2PPD8 638 aa24.12■■□□□ 1.45
UBE3B-212ENST00000540230 CDC42BPBQ9Y5S2 1711 aa24.11■■□□□ 1.45
UBE3B-212ENST00000540230 DENND4BO75064 1496 aaPredicted RBP24.11■■□□□ 1.45
UBE3B-212ENST00000540230 ADGRL1O94910 1474 aa24.09■■□□□ 1.45
UBE3B-212ENST00000540230 ARHGAP5Q13017 1502 aa24.09■■□□□ 1.45
UBE3B-212ENST00000540230 PREX2Q70Z35 1606 aa24.09■■□□□ 1.45
UBE3B-212ENST00000540230 VPS8Q8N3P4 1428 aa24.09■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms