RNA–Protein interactions for RNA: ENST00000540230.5

UBE3B-212, Transcript of ubiquitin protein ligase E3B, humanhuman

TSL 1 (best) BASIC

Gene UBE3B, Length 1,541 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-212ENST00000540230 NISCHQ9Y2I1 1504 aa36.98■■■■□ 3.51
UBE3B-212ENST00000540230 CCDC180Q9P1Z9 1646 aa32.92■■■□□ 2.86
UBE3B-212ENST00000540230 ABCC9O60706 1549 aa32.38■■■□□ 2.77
UBE3B-212ENST00000540230 RB1CC1Q8TDY2 1594 aa31.03■■■□□ 2.56
UBE3B-212ENST00000540230 NACADO15069 1562 aa30.95■■■□□ 2.55
UBE3B-212ENST00000540230 DCAF8L2P0C7V8 631 aa30.93■■■□□ 2.54
UBE3B-212ENST00000540230 ZCCHC6Q5VYS8 1495 aaKnown RBP30.8■■■□□ 2.52
UBE3B-212ENST00000540230 MYO15BQ96JP2 1530 aa30.71■■■□□ 2.51
UBE3B-212ENST00000540230 DCAF1Q9Y4B6 1507 aa30.55■■■□□ 2.48
UBE3B-212ENST00000540230 UNC13AQ9UPW8 1703 aa30.43■■■□□ 2.46
UBE3B-212ENST00000540230 PABPN1Q86U42 306 aaKnown RBP eCLIP30.24■■■□□ 2.43
UBE3B-212ENST00000540230 BICRAQ9NZM4 1560 aa30.18■■■□□ 2.42
UBE3B-212ENST00000540230 SCRIBQ14160 1630 aa30.09■■■□□ 2.41
UBE3B-212ENST00000540230 DNAJC5BQ9UF47 199 aa29.87■■■□□ 2.37
UBE3B-212ENST00000540230 SHROOM4Q9ULL8 1493 aa29.72■■■□□ 2.35
UBE3B-212ENST00000540230 EIF4G1Q04637 1599 aaKnown RBP29.36■■■□□ 2.29
UBE3B-212ENST00000540230 CC2D2AQ9P2K1 1620 aa29.28■■■□□ 2.28
UBE3B-212ENST00000540230 CECR2Q9BXF3 1484 aa29.07■■■□□ 2.24
UBE3B-212ENST00000540230 SMARCA4P51532 1647 aa28.75■■■□□ 2.19
UBE3B-212ENST00000540230 BAZ1AQ9NRL2 1556 aaPredicted RBP28.65■■■□□ 2.18
UBE3B-212ENST00000540230 ATAD2BQ9ULI0 1458 aa28.6■■■□□ 2.17
UBE3B-212ENST00000540230 NCAPD3P42695 1498 aa28.58■■■□□ 2.17
UBE3B-212ENST00000540230 MROH2BQ7Z745 1585 aa28.54■■■□□ 2.16
UBE3B-212ENST00000540230 SMARCA2P51531 1590 aa28.52■■■□□ 2.16
UBE3B-212ENST00000540230 PEG3Q9GZU2 1588 aa28.44■■■□□ 2.14
UBE3B-212ENST00000540230 HMGXB3Q12766 1538 aa28.44■■■□□ 2.14
UBE3B-212ENST00000540230 BAZ1BQ9UIG0 1483 aaKnown RBP28.34■■■□□ 2.13
UBE3B-212ENST00000540230 WIZO95785 1651 aa28.24■■■□□ 2.11
UBE3B-212ENST00000540230 RSF1Q96T23 1441 aaPredicted RBP28.14■■■□□ 2.1
UBE3B-212ENST00000540230 NESP48681 1621 aa28.02■■■□□ 2.08
UBE3B-212ENST00000540230 TOP2AP11388 1531 aaKnown RBP27.88■■■□□ 2.05
UBE3B-212ENST00000540230 ERCC6Q03468 1493 aa27.87■■■□□ 2.05
UBE3B-212ENST00000540230 LAMC3Q9Y6N6 1575 aa27.84■■■□□ 2.05
UBE3B-212ENST00000540230 CADPSQ9ULU8 1353 aa27.73■■■□□ 2.03
UBE3B-212ENST00000540230 KIF21AQ7Z4S6 1674 aa27.68■■■□□ 2.02
UBE3B-212ENST00000540230 PDS5BQ9NTI5 1447 aa27.63■■■□□ 2.01
UBE3B-212ENST00000540230 THOC2Q8NI27 1593 aaKnown RBP27.61■■■□□ 2.01
UBE3B-212ENST00000540230 CUX2O14529 1486 aa27.6■■■□□ 2.01
UBE3B-212ENST00000540230 CCDC88BA6NC98 1476 aa27.56■■■□□ 2
UBE3B-212ENST00000540230 CFTRP13569 1480 aa27.56■■■□□ 2
UBE3B-212ENST00000540230 FANCD2Q9BXW9 1451 aa27.44■■□□□ 1.98
UBE3B-212ENST00000540230 CEP164Q9UPV0 1460 aa27.41■■□□□ 1.98
UBE3B-212ENST00000540230 MRC2Q9UBG0 1479 aa27.4■■□□□ 1.98
UBE3B-212ENST00000540230 PRDM2Q13029 1718 aa27.36■■□□□ 1.97
UBE3B-212ENST00000540230 WDR62O43379 1518 aa27.33■■□□□ 1.97
UBE3B-212ENST00000540230 SUPT5HO00267 1087 aaKnown RBP27.32■■□□□ 1.96
UBE3B-212ENST00000540230 URB2Q14146 1524 aaKnown RBP27.21■■□□□ 1.95
UBE3B-212ENST00000540230 TOPBP1Q92547 1522 aa27■■□□□ 1.91
UBE3B-212ENST00000540230 DNMBPQ6XZF7 1577 aa26.94■■□□□ 1.9
UBE3B-212ENST00000540230 DNAJC5Q9H3Z4 198 aa26.91■■□□□ 1.9
UBE3B-212ENST00000540230 ABCC8Q09428 1581 aa26.9■■□□□ 1.9
UBE3B-212ENST00000540230 IFT140Q96RY7 1462 aa26.82■■□□□ 1.88
UBE3B-212ENST00000540230 ZNF608Q9ULD9 1512 aaPredicted RBP26.79■■□□□ 1.88
UBE3B-212ENST00000540230 CUX1P39880 1505 aa26.78■■□□□ 1.88
UBE3B-212ENST00000540230 POLA1P09884 1462 aaPredicted RBP26.78■■□□□ 1.88
UBE3B-212ENST00000540230 TARBP1Q13395 1621 aaKnown RBP26.74■■□□□ 1.87
UBE3B-212ENST00000540230 FGD5Q6ZNL6 1462 aa26.69■■□□□ 1.86
UBE3B-212ENST00000540230 RAD54L2Q9Y4B4 1467 aa26.68■■□□□ 1.86
UBE3B-212ENST00000540230 EIF4G3O43432 1585 aaKnown RBP26.67■■□□□ 1.86
UBE3B-212ENST00000540230 SOGA1O94964 1423 aa26.62■■□□□ 1.85
UBE3B-212ENST00000540230 AQRO60306 1485 aaKnown RBP eCLIP26.6■■□□□ 1.851e-6■■■■□ 25.4
UBE3B-212ENST00000540230 TDRD9Q8NDG6 1382 aaKnown RBP26.52■■□□□ 1.84
UBE3B-212ENST00000540230 SYNJ1O43426 1573 aa26.52■■□□□ 1.84
UBE3B-212ENST00000540230 WRNQ14191 1432 aaPredicted RBP eCLIP26.51■■□□□ 1.83
UBE3B-212ENST00000540230 WDR97A6NE52 1622 aa26.5■■□□□ 1.83
UBE3B-212ENST00000540230 BIVM-ERCC5R4GMW8 1640 aa26.5■■□□□ 1.83
UBE3B-212ENST00000540230 TOP2BQ02880 1626 aa26.48■■□□□ 1.83
UBE3B-212ENST00000540230 OSCARQ8IYS5 282 aa26.41■■□□□ 1.82
UBE3B-212ENST00000540230 ABCA10Q8WWZ4 1543 aa26.39■■□□□ 1.82
UBE3B-212ENST00000540230 CHD1O14646 1710 aa26.37■■□□□ 1.81
UBE3B-212ENST00000540230 SNAPC4Q5SXM2 1469 aa26.35■■□□□ 1.81
UBE3B-212ENST00000540230 ABCA5Q8WWZ7 1642 aa26.34■■□□□ 1.81
UBE3B-212ENST00000540230 PBRM1Q86U86 1689 aa26.32■■□□□ 1.8
UBE3B-212ENST00000540230 GRIN2BQ13224 1484 aa26.32■■□□□ 1.8
UBE3B-212ENST00000540230 GAPVD1Q14C86 1478 aa26.32■■□□□ 1.8
UBE3B-212ENST00000540230 FBLN2P98095 1184 aa26.26■■□□□ 1.79
UBE3B-212ENST00000540230 MAGI1Q96QZ7 1491 aaPredicted RBP26.26■■□□□ 1.79
UBE3B-212ENST00000540230 SYNJ2O15056 1496 aa26.17■■□□□ 1.78
UBE3B-212ENST00000540230 CHMP7Q8WUX9 453 aaPredicted RBP26.14■■□□□ 1.77
UBE3B-212ENST00000540230 ADAMTS12P58397 1594 aa26.1■■□□□ 1.77
UBE3B-212ENST00000540230 RIMBP3CA6NJZ7 1639 aa26.1■■□□□ 1.77
UBE3B-212ENST00000540230 RIMBP3BA6NNM3 1639 aa26.1■■□□□ 1.77
UBE3B-212ENST00000540230 RIMBP3Q9UFD9 1639 aa26.1■■□□□ 1.77
UBE3B-212ENST00000540230 ARHGEF11O15085 1522 aa26.07■■□□□ 1.76
UBE3B-212ENST00000540230 ERICH3Q5RHP9 1530 aa26.07■■□□□ 1.76
UBE3B-212ENST00000540230 CLASP1Q7Z460 1538 aa26.06■■□□□ 1.76
UBE3B-212ENST00000540230 GRIN2AQ12879 1464 aa26.01■■□□□ 1.75
UBE3B-212ENST00000540230 TRIM41Q8WV44 630 aa26.01■■□□□ 1.75
UBE3B-212ENST00000540230 FHAD1B1AJZ9 1412 aa26■■□□□ 1.75
UBE3B-212ENST00000540230 KIF27Q86VH2 1401 aa25.94■■□□□ 1.74
UBE3B-212ENST00000540230 CEP170Q5SW79 1584 aa25.93■■□□□ 1.74
UBE3B-212ENST00000540230 NUP160Q12769 1436 aa25.9■■□□□ 1.74
UBE3B-212ENST00000540230 IGF1RP08069 1367 aa25.88■■□□□ 1.73
UBE3B-212ENST00000540230 ARAP1Q96P48 1450 aa25.87■■□□□ 1.73
UBE3B-212ENST00000540230 CUL7Q14999 1698 aa25.81■■□□□ 1.72
UBE3B-212ENST00000540230 CYB5RLQ6IPT4 315 aa25.8■■□□□ 1.72
UBE3B-212ENST00000540230 RUSC2Q8N2Y8 1516 aa25.78■■□□□ 1.72
UBE3B-212ENST00000540230 ERCC6L2Q5T890 1561 aa25.75■■□□□ 1.71
UBE3B-212ENST00000540230 SHROOM2Q13796 1616 aa25.73■■□□□ 1.71
UBE3B-212ENST00000540230 CARMIL1Q5VZK9 1371 aa25.71■■□□□ 1.71
Retrieved 100 of 20,778 RNA–protein pairs in 224 ms