RNA–Protein interactions for RNA: ENST00000538995.1

RTN3-209, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 814 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-209ENST00000538995 ERCC6L2Q5T890 1561 aa19.83■□□□□ 0.77
RTN3-209ENST00000538995 CARMIL1Q5VZK9 1371 aa19.82■□□□□ 0.76
RTN3-209ENST00000538995 KIAA0586Q9BVV6 1533 aa19.81■□□□□ 0.76
RTN3-209ENST00000538995 PRG4Q92954 1404 aaPredicted RBP19.79■□□□□ 0.76
RTN3-209ENST00000538995 JPH4Q96JJ6 628 aa19.79■□□□□ 0.76
RTN3-209ENST00000538995 RAPGEF2Q9Y4G8 1499 aa19.68■□□□□ 0.74
RTN3-209ENST00000538995 TRHP20396 242 aaPredicted RBP19.67■□□□□ 0.74
RTN3-209ENST00000538995 IQGAP2Q13576 1575 aa19.64■□□□□ 0.73
RTN3-209ENST00000538995 CARMIL2Q6F5E8 1435 aa19.59■□□□□ 0.73
RTN3-209ENST00000538995 PRXQ9BXM0 1461 aa19.58■□□□□ 0.72
RTN3-209ENST00000538995 UGGT2Q9NYU1 1516 aa19.55■□□□□ 0.72
RTN3-209ENST00000538995 TNIKQ9UKE5 1360 aa19.54■□□□□ 0.72
RTN3-209ENST00000538995 PTPRGP23470 1445 aa19.53■□□□□ 0.72
RTN3-209ENST00000538995 EEA1Q15075 1411 aa19.51■□□□□ 0.71
RTN3-209ENST00000538995 DISP1Q96F81 1524 aa19.51■□□□□ 0.71
RTN3-209ENST00000538995 ADCY10Q96PN6 1610 aa19.51■□□□□ 0.71
RTN3-209ENST00000538995 MAPKBP1O60336 1514 aa19.5■□□□□ 0.71
RTN3-209ENST00000538995 NPM1P06748 294 aaKnown RBP eCLIP19.48■□□□□ 0.71
RTN3-209ENST00000538995 CTTNBP2Q8WZ74 1663 aa19.46■□□□□ 0.71
RTN3-209ENST00000538995 KIAA0556O60303 1618 aa19.45■□□□□ 0.7
RTN3-209ENST00000538995 CSRNP3Q8WYN3 585 aa19.45■□□□□ 0.7
RTN3-209ENST00000538995 UHRF1BP1LA0JNW5 1464 aa19.44■□□□□ 0.7
RTN3-209ENST00000538995 GOLGA3Q08378 1498 aa19.42■□□□□ 0.7
RTN3-209ENST00000538995 ABCC2Q92887 1545 aa19.42■□□□□ 0.7
RTN3-209ENST00000538995 ABCC10Q5T3U5 1492 aa19.41■□□□□ 0.7
RTN3-209ENST00000538995 UACAQ9BZF9 1416 aa19.41■□□□□ 0.7
RTN3-209ENST00000538995 TTBK1Q5TCY1 1321 aaPredicted RBP19.37■□□□□ 0.69
RTN3-209ENST00000538995 KIF13AQ9H1H9 1805 aa19.37■□□□□ 0.69
RTN3-209ENST00000538995 DIP2BQ9P265 1576 aa19.36■□□□□ 0.69
RTN3-209ENST00000538995 FAM69CQ0P6D2 419 aa19.33■□□□□ 0.68
RTN3-209ENST00000538995 KDM5BQ9UGL1 1544 aa19.33■□□□□ 0.68
RTN3-209ENST00000538995 PLB1Q6P1J6 1458 aa19.31■□□□□ 0.68
RTN3-209ENST00000538995 ASXL2Q76L83 1435 aa19.29■□□□□ 0.68
RTN3-209ENST00000538995 KIF21BO75037 1637 aa19.29■□□□□ 0.68
RTN3-209ENST00000538995 ABCA8O94911 1581 aa19.26■□□□□ 0.67
RTN3-209ENST00000538995 SAMD9Q5K651 1589 aa19.25■□□□□ 0.67
RTN3-209ENST00000538995 FAM9AQ8IZU1 332 aaPredicted RBP19.24■□□□□ 0.67
RTN3-209ENST00000538995 GLI2P10070 1586 aa19.23■□□□□ 0.67
RTN3-209ENST00000538995 ZCCHC11Q5TAX3 1644 aaKnown RBP19.23■□□□□ 0.67
RTN3-209ENST00000538995 EPRSP07814 1512 aaKnown RBP19.19■□□□□ 0.66
RTN3-209ENST00000538995 WDR7Q9Y4E6 1490 aa19.18■□□□□ 0.66
RTN3-209ENST00000538995 EFCAB5A4FU69 1503 aa19.15■□□□□ 0.66
RTN3-209ENST00000538995 P3H3Q8IVL6 736 aa19.14■□□□□ 0.65
RTN3-209ENST00000538995 MAP3K4Q9Y6R4 1608 aa19.11■□□□□ 0.65
RTN3-209ENST00000538995 KDM6BO15054 1643 aa19.1■□□□□ 0.65
RTN3-209ENST00000538995 FHOD3Q2V2M9 1422 aa19.09■□□□□ 0.65
RTN3-209ENST00000538995 RAPGEF6Q8TEU7 1601 aa19.09■□□□□ 0.65
RTN3-209ENST00000538995 PPRC1Q5VV67 1664 aaKnown RBP19.08■□□□□ 0.65
RTN3-209ENST00000538995 TSPOAP1O95153 1857 aa19.08■□□□□ 0.65
RTN3-209ENST00000538995 ATP10BO94823 1461 aa19.08■□□□□ 0.64
RTN3-209ENST00000538995 TEX14Q8IWB6 1497 aa19.08■□□□□ 0.64
RTN3-209ENST00000538995 UBTFP17480 764 aaKnown RBP19.06■□□□□ 0.64
RTN3-209ENST00000538995 RANGAP1P46060 587 aaPredicted RBP19.05■□□□□ 0.64
RTN3-209ENST00000538995 NUP153P49790 1475 aaKnown RBP19.04■□□□□ 0.64
RTN3-209ENST00000538995 CFAP43Q8NDM7 1665 aa19.01■□□□□ 0.63
RTN3-209ENST00000538995 MAGI3Q5TCQ9 1506 aa19.01■□□□□ 0.63
RTN3-209ENST00000538995 CD109Q6YHK3 1445 aa19■□□□□ 0.63
RTN3-209ENST00000538995 ARID3CA6NKF2 412 aa18.98■□□□□ 0.63
RTN3-209ENST00000538995 KCNH8Q96L42 1107 aa18.98■□□□□ 0.63
RTN3-209ENST00000538995 FMN1Q68DA7 1419 aa18.98■□□□□ 0.63
RTN3-209ENST00000538995 ARHGAP35Q9NRY4 1499 aa18.97■□□□□ 0.63
RTN3-209ENST00000538995 EHMT2Q96KQ7 1210 aa18.96■□□□□ 0.63
RTN3-209ENST00000538995 ABCA9Q8IUA7 1624 aa18.94■□□□□ 0.62
RTN3-209ENST00000538995 COL17A1Q9UMD9 1497 aaPredicted RBP18.93■□□□□ 0.62
RTN3-209ENST00000538995 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.93■□□□□ 0.62
RTN3-209ENST00000538995 HNRNPUL2Q1KMD3 747 aaKnown RBP18.93■□□□□ 0.62
RTN3-209ENST00000538995 HECW1Q76N89 1606 aa18.89■□□□□ 0.62
RTN3-209ENST00000538995 PLEKHD1A6NEE1 506 aa18.89■□□□□ 0.61
RTN3-209ENST00000538995 PHLDB1Q86UU1 1377 aa18.88■□□□□ 0.61
RTN3-209ENST00000538995 ARAP3Q8WWN8 1544 aa18.85■□□□□ 0.61
RTN3-209ENST00000538995 CDK13Q14004 1512 aaKnown RBP18.84■□□□□ 0.61
RTN3-209ENST00000538995 NEO1Q92859 1461 aa18.84■□□□□ 0.61
RTN3-209ENST00000538995 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.79■□□□□ 0.61e-77■■□□□ 12.1
RTN3-209ENST00000538995 CDK11AQ9UQ88 783 aaPredicted RBP18.79■□□□□ 0.6
RTN3-209ENST00000538995 CLIP1P30622 1438 aa18.79■□□□□ 0.6
RTN3-209ENST00000538995 CASKIN1Q8WXD9 1431 aa18.79■□□□□ 0.6
RTN3-209ENST00000538995 ATP1B4Q9UN42 357 aaPredicted RBP18.77■□□□□ 0.6
RTN3-209ENST00000538995 CCDC18Q5T9S5 1454 aa18.76■□□□□ 0.59
RTN3-209ENST00000538995 TTC37Q6PGP7 1564 aa18.76■□□□□ 0.59
RTN3-209ENST00000538995 PCF11O94913 1555 aaKnown RBP18.75■□□□□ 0.59
RTN3-209ENST00000538995 CFAP74Q9C0B2 1584 aa18.75■□□□□ 0.59
RTN3-209ENST00000538995 FYCO1Q9BQS8 1478 aa18.74■□□□□ 0.59
RTN3-209ENST00000538995 KDM4FA0A1W2PPD8 638 aa18.74■□□□□ 0.59
RTN3-209ENST00000538995 TROQ12816 1431 aaPredicted RBP18.74■□□□□ 0.59
RTN3-209ENST00000538995 FANCAO15360 1455 aa18.73■□□□□ 0.59
RTN3-209ENST00000538995 ADGRL1O94910 1474 aa18.71■□□□□ 0.59
RTN3-209ENST00000538995 KIF14Q15058 1648 aa18.71■□□□□ 0.58
RTN3-209ENST00000538995 PLCH2O75038 1416 aa18.7■□□□□ 0.58
RTN3-209ENST00000538995 AKNAQ7Z591 1439 aa18.7■□□□□ 0.58
RTN3-209ENST00000538995 LRRIQ1Q96JM4 1722 aa18.69■□□□□ 0.58
RTN3-209ENST00000538995 FRMPD1Q5SYB0 1578 aa18.68■□□□□ 0.58
RTN3-209ENST00000538995 DENND4BO75064 1496 aaPredicted RBP18.68■□□□□ 0.58
RTN3-209ENST00000538995 RAPGEF3O95398 923 aa18.66■□□□□ 0.58
RTN3-209ENST00000538995 CEP162Q5TB80 1403 aa18.65■□□□□ 0.58
RTN3-209ENST00000538995 MYO5CQ9NQX4 1742 aa18.63■□□□□ 0.57
RTN3-209ENST00000538995 ZMYM4Q5VZL5 1548 aa18.62■□□□□ 0.57
RTN3-209ENST00000538995 RICTORQ6R327 1708 aa18.62■□□□□ 0.57
RTN3-209ENST00000538995 EFCAB2Q5VUJ9 269 aa18.61■□□□□ 0.57
RTN3-209ENST00000538995 ARHGEF40Q8TER5 1519 aa18.6■□□□□ 0.57
RTN3-209ENST00000538995 POGZQ7Z3K3 1410 aa18.6■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 57.2 ms