RNA–Protein interactions for RNA: ENST00000535906.1

VPS33B-202, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 2 BASIC

Gene VPS33B, Length 2,420 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-202ENST00000535906 TIAM1Q13009 1591 aa20.07■□□□□ 0.8
VPS33B-202ENST00000535906 MAP3K1Q13233 1512 aa20.06■□□□□ 0.8
VPS33B-202ENST00000535906 FHAD1B1AJZ9 1412 aa20.05■□□□□ 0.8
VPS33B-202ENST00000535906 FHOD3Q2V2M9 1422 aa20.04■□□□□ 0.8
VPS33B-202ENST00000535906 EFCAB5A4FU69 1503 aa20.03■□□□□ 0.8
VPS33B-202ENST00000535906 PCF11O94913 1555 aaKnown RBP20.02■□□□□ 0.8
VPS33B-202ENST00000535906 MRC2Q9UBG0 1479 aa20.01■□□□□ 0.79
VPS33B-202ENST00000535906 CCNB3Q8WWL7 1395 aa19.99■□□□□ 0.79
VPS33B-202ENST00000535906 LRRC9Q6ZRR7 1453 aa19.99■□□□□ 0.79
VPS33B-202ENST00000535906 ATP1B4Q9UN42 357 aaPredicted RBP19.95■□□□□ 0.78
VPS33B-202ENST00000535906 CFAP43Q8NDM7 1665 aa19.95■□□□□ 0.78
VPS33B-202ENST00000535906 AQRO60306 1485 aaKnown RBP eCLIP19.94■□□□□ 0.782e-7■■■■□ 25.7
VPS33B-202ENST00000535906 FYCO1Q9BQS8 1478 aa19.94■□□□□ 0.78
VPS33B-202ENST00000535906 PBRM1Q86U86 1689 aa19.93■□□□□ 0.78
VPS33B-202ENST00000535906 CASKIN1Q8WXD9 1431 aa19.93■□□□□ 0.78
VPS33B-202ENST00000535906 SAMD9Q5K651 1589 aa19.9■□□□□ 0.78
VPS33B-202ENST00000535906 PHLDB1Q86UU1 1377 aa19.9■□□□□ 0.78
VPS33B-202ENST00000535906 FMN1Q68DA7 1419 aa19.89■□□□□ 0.78
VPS33B-202ENST00000535906 ITGAEP38570 1179 aa19.87■□□□□ 0.77
VPS33B-202ENST00000535906 WDR62O43379 1518 aa19.87■□□□□ 0.77
VPS33B-202ENST00000535906 DHX57Q6P158 1386 aaKnown RBP19.87■□□□□ 0.77
VPS33B-202ENST00000535906 SNAPC4Q5SXM2 1469 aa19.87■□□□□ 0.77
VPS33B-202ENST00000535906 ADAMTS12P58397 1594 aa19.84■□□□□ 0.77
VPS33B-202ENST00000535906 ZNF608Q9ULD9 1512 aaPredicted RBP19.84■□□□□ 0.77
VPS33B-202ENST00000535906 GRIN2BQ13224 1484 aa19.84■□□□□ 0.77
VPS33B-202ENST00000535906 IFT140Q96RY7 1462 aa19.84■□□□□ 0.77
VPS33B-202ENST00000535906 DIEXFQ68CQ4 756 aaKnown RBP19.81■□□□□ 0.76
VPS33B-202ENST00000535906 CLSPNQ9HAW4 1339 aa19.81■□□□□ 0.76
VPS33B-202ENST00000535906 LRRIQ1Q96JM4 1722 aa19.78■□□□□ 0.76
VPS33B-202ENST00000535906 ZNF316A6NFI3 1004 aaPredicted RBP19.78■□□□□ 0.76
VPS33B-202ENST00000535906 ERCC6Q03468 1493 aa19.77■□□□□ 0.76
VPS33B-202ENST00000535906 FAM50AQ14320 339 aaKnown RBP19.77■□□□□ 0.76
VPS33B-202ENST00000535906 IQGAP2Q13576 1575 aa19.76■□□□□ 0.75
VPS33B-202ENST00000535906 RAB3GAP2Q9H2M9 1393 aa19.74■□□□□ 0.75
VPS33B-202ENST00000535906 MTUS2Q5JR59 1369 aa19.72■□□□□ 0.75
VPS33B-202ENST00000535906 THOC2Q8NI27 1593 aaKnown RBP19.71■□□□□ 0.75
VPS33B-202ENST00000535906 EIF4G3O43432 1585 aaKnown RBP19.71■□□□□ 0.75
VPS33B-202ENST00000535906 SETD5Q9C0A6 1442 aa19.69■□□□□ 0.74
VPS33B-202ENST00000535906 SCAF1Q9H7N4 1312 aaKnown RBP19.68■□□□□ 0.74
VPS33B-202ENST00000535906 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.67■□□□□ 0.74
VPS33B-202ENST00000535906 FGD6Q6ZV73 1430 aa19.66■□□□□ 0.74
VPS33B-202ENST00000535906 UGGT2Q9NYU1 1516 aa19.65■□□□□ 0.74
VPS33B-202ENST00000535906 NCOA2Q15596 1464 aa19.63■□□□□ 0.73
VPS33B-202ENST00000535906 GRIN2AQ12879 1464 aa19.63■□□□□ 0.73
VPS33B-202ENST00000535906 KIAA0586Q9BVV6 1533 aa19.63■□□□□ 0.73
VPS33B-202ENST00000535906 MAGI3Q5TCQ9 1506 aa19.62■□□□□ 0.73
VPS33B-202ENST00000535906 EHBP1L1Q8N3D4 1523 aa19.61■□□□□ 0.73
VPS33B-202ENST00000535906 HECW1Q76N89 1606 aa19.61■□□□□ 0.73
VPS33B-202ENST00000535906 CCDC18Q5T9S5 1454 aa19.61■□□□□ 0.73
VPS33B-202ENST00000535906 SUPT6HQ7KZ85 1726 aaKnown RBP19.61■□□□□ 0.73
VPS33B-202ENST00000535906 MAPKBP1O60336 1514 aa19.6■□□□□ 0.73
VPS33B-202ENST00000535906 ACIN1Q9UKV3 1341 aaKnown RBP19.59■□□□□ 0.73
VPS33B-202ENST00000535906 MYOM3Q5VTT5 1437 aa19.59■□□□□ 0.73
VPS33B-202ENST00000535906 EPRSP07814 1512 aaKnown RBP19.58■□□□□ 0.73
VPS33B-202ENST00000535906 DISP1Q96F81 1524 aa19.57■□□□□ 0.72
VPS33B-202ENST00000535906 MAGI1Q96QZ7 1491 aaPredicted RBP19.57■□□□□ 0.72
VPS33B-202ENST00000535906 KIAA0556O60303 1618 aa19.56■□□□□ 0.72
VPS33B-202ENST00000535906 ARHGEF11O15085 1522 aa19.56■□□□□ 0.72
VPS33B-202ENST00000535906 CDK13Q14004 1512 aaKnown RBP19.55■□□□□ 0.72
VPS33B-202ENST00000535906 CHMP7Q8WUX9 453 aaPredicted RBP19.54■□□□□ 0.72
VPS33B-202ENST00000535906 PTPRKQ15262 1439 aa19.54■□□□□ 0.72
VPS33B-202ENST00000535906 SYNJ2O15056 1496 aa19.53■□□□□ 0.72
VPS33B-202ENST00000535906 ARID3CA6NKF2 412 aa19.53■□□□□ 0.72
VPS33B-202ENST00000535906 NEUROD1Q13562 356 aa19.53■□□□□ 0.72
VPS33B-202ENST00000535906 CENPBP07199 599 aaPredicted RBP19.52■□□□□ 0.72
VPS33B-202ENST00000535906 CEP170Q5SW79 1584 aa19.51■□□□□ 0.71
VPS33B-202ENST00000535906 FBLN2P98095 1184 aa19.5■□□□□ 0.71
VPS33B-202ENST00000535906 PTPN23Q9H3S7 1636 aa19.5■□□□□ 0.71
VPS33B-202ENST00000535906 HFM1A2PYH4 1435 aa19.47■□□□□ 0.71
VPS33B-202ENST00000535906 SIN3AQ96ST3 1273 aa19.45■□□□□ 0.7
VPS33B-202ENST00000535906 NUP153P49790 1475 aaKnown RBP19.45■□□□□ 0.7
VPS33B-202ENST00000535906 RAPGEF6Q8TEU7 1601 aa19.43■□□□□ 0.7
VPS33B-202ENST00000535906 TCOF1Q13428 1488 aaKnown RBP19.43■□□□□ 0.7
VPS33B-202ENST00000535906 NUP160Q12769 1436 aa19.43■□□□□ 0.7
VPS33B-202ENST00000535906 MIER1Q8N108 512 aa19.43■□□□□ 0.7
VPS33B-202ENST00000535906 NAIPQ13075 1403 aa19.42■□□□□ 0.7
VPS33B-202ENST00000535906 JPH4Q96JJ6 628 aa19.4■□□□□ 0.7
VPS33B-202ENST00000535906 MIA2Q96PC5 1412 aa19.39■□□□□ 0.69
VPS33B-202ENST00000535906 PLB1Q6P1J6 1458 aa19.37■□□□□ 0.69
VPS33B-202ENST00000535906 UACAQ9BZF9 1416 aa19.36■□□□□ 0.69
VPS33B-202ENST00000535906 CHIC2Q9UKJ5 165 aa19.36■□□□□ 0.69
VPS33B-202ENST00000535906 CARMIL2Q6F5E8 1435 aa19.35■□□□□ 0.69
VPS33B-202ENST00000535906 RRP7BPQ9NSQ0 103 aa19.34■□□□□ 0.69
VPS33B-202ENST00000535906 CDK11AQ9UQ88 783 aaPredicted RBP19.33■□□□□ 0.69
VPS33B-202ENST00000535906 TIMELESSQ9UNS1 1208 aa19.32■□□□□ 0.68
VPS33B-202ENST00000535906 GTF3C3Q9Y5Q9 886 aa19.31■□□□□ 0.68
VPS33B-202ENST00000535906 PRG4Q92954 1404 aaPredicted RBP19.3■□□□□ 0.68
VPS33B-202ENST00000535906 GCC2Q8IWJ2 1684 aa19.29■□□□□ 0.68
VPS33B-202ENST00000535906 TROQ12816 1431 aaPredicted RBP19.28■□□□□ 0.68
VPS33B-202ENST00000535906 AKNAQ7Z591 1439 aa19.28■□□□□ 0.68
VPS33B-202ENST00000535906 ZNF644Q9H582 1327 aaPredicted RBP19.27■□□□□ 0.68
VPS33B-202ENST00000535906 KDM6BO15054 1643 aa19.26■□□□□ 0.67
VPS33B-202ENST00000535906 PPP1R15AO75807 674 aaPredicted RBP19.25■□□□□ 0.67
VPS33B-202ENST00000535906 DAPK1P53355 1430 aa19.24■□□□□ 0.67
VPS33B-202ENST00000535906 PELP1Q8IZL8 1130 aaKnown RBP19.24■□□□□ 0.67
VPS33B-202ENST00000535906 YTHDC1Q96MU7 727 aaKnown RBP19.24■□□□□ 0.67
VPS33B-202ENST00000535906 ABCA8O94911 1581 aa19.23■□□□□ 0.67
VPS33B-202ENST00000535906 ABCC5O15440 1437 aa19.22■□□□□ 0.67
VPS33B-202ENST00000535906 DNMT1P26358 1616 aaKnown RBP19.22■□□□□ 0.67
VPS33B-202ENST00000535906 KIF14Q15058 1648 aa19.22■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms