RNA–Protein interactions for RNA: ENST00000535906.1

VPS33B-202, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 2 BASIC

Gene VPS33B, Length 2,420 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-202ENST00000535906 NISCHQ9Y2I1 1504 aa28.89■■■□□ 2.22
VPS33B-202ENST00000535906 CCDC180Q9P1Z9 1646 aa24.81■■□□□ 1.56
VPS33B-202ENST00000535906 ZCCHC6Q5VYS8 1495 aaKnown RBP24.36■■□□□ 1.49
VPS33B-202ENST00000535906 SHROOM4Q9ULL8 1493 aa24.19■■□□□ 1.46
VPS33B-202ENST00000535906 DCAF8L2P0C7V8 631 aa23.92■■□□□ 1.42
VPS33B-202ENST00000535906 DCAF1Q9Y4B6 1507 aa23.77■■□□□ 1.4
VPS33B-202ENST00000535906 SUPT5HO00267 1087 aaKnown RBP23.54■■□□□ 1.36
VPS33B-202ENST00000535906 MYO15BQ96JP2 1530 aa23.25■■□□□ 1.31
VPS33B-202ENST00000535906 ABCC9O60706 1549 aa23.2■■□□□ 1.3
VPS33B-202ENST00000535906 SCRIBQ14160 1630 aa23.08■■□□□ 1.29
VPS33B-202ENST00000535906 NACADO15069 1562 aa23.01■■□□□ 1.27
VPS33B-202ENST00000535906 CHIC1Q5VXU3 224 aa22.76■■□□□ 1.23
VPS33B-202ENST00000535906 RB1CC1Q8TDY2 1594 aa22.71■■□□□ 1.23
VPS33B-202ENST00000535906 RSF1Q96T23 1441 aaPredicted RBP22.68■■□□□ 1.22
VPS33B-202ENST00000535906 CECR2Q9BXF3 1484 aa22.52■■□□□ 1.2
VPS33B-202ENST00000535906 MROH2BQ7Z745 1585 aa22.41■■□□□ 1.18
VPS33B-202ENST00000535906 UNC13AQ9UPW8 1703 aa22.36■■□□□ 1.17
VPS33B-202ENST00000535906 WIZO95785 1651 aa22.27■■□□□ 1.16
VPS33B-202ENST00000535906 BAZ1AQ9NRL2 1556 aaPredicted RBP22.23■■□□□ 1.15
VPS33B-202ENST00000535906 BICRAQ9NZM4 1560 aa22.1■■□□□ 1.13
VPS33B-202ENST00000535906 SMARCA4P51532 1647 aa22.09■■□□□ 1.13
VPS33B-202ENST00000535906 PABPN1Q86U42 306 aaKnown RBP eCLIP22.07■■□□□ 1.12
VPS33B-202ENST00000535906 LOC105371045A0A1W2PR82 267 aa22.01■■□□□ 1.11
VPS33B-202ENST00000535906 TRIM41Q8WV44 630 aa22■■□□□ 1.11
VPS33B-202ENST00000535906 TOP2AP11388 1531 aaKnown RBP21.94■■□□□ 1.1
VPS33B-202ENST00000535906 EIF4G1Q04637 1599 aaKnown RBP21.83■■□□□ 1.09
VPS33B-202ENST00000535906 CCDC88BA6NC98 1476 aa21.82■■□□□ 1.08
VPS33B-202ENST00000535906 SMARCA2P51531 1590 aa21.8■■□□□ 1.08
VPS33B-202ENST00000535906 FAM9AQ8IZU1 332 aaPredicted RBP21.74■■□□□ 1.07
VPS33B-202ENST00000535906 PEG3Q9GZU2 1588 aa21.73■■□□□ 1.07
VPS33B-202ENST00000535906 ATAD2BQ9ULI0 1458 aa21.61■■□□□ 1.05
VPS33B-202ENST00000535906 ABCC8Q09428 1581 aa21.6■■□□□ 1.05
VPS33B-202ENST00000535906 PCGF6Q9BYE7 350 aa21.57■■□□□ 1.04
VPS33B-202ENST00000535906 BAZ1BQ9UIG0 1483 aaKnown RBP21.52■■□□□ 1.03
VPS33B-202ENST00000535906 EHMT2Q96KQ7 1210 aa21.51■■□□□ 1.03
VPS33B-202ENST00000535906 HRCP23327 699 aa21.49■■□□□ 1.03
VPS33B-202ENST00000535906 SOGA1O94964 1423 aa21.32■■□□□ 1
VPS33B-202ENST00000535906 WRNQ14191 1432 aaPredicted RBP eCLIP21.31■■□□□ 1
VPS33B-202ENST00000535906 TRIM26Q12899 539 aaPredicted RBP21.31■■□□□ 1
VPS33B-202ENST00000535906 NCAPD3P42695 1498 aa21.29■■□□□ 1
VPS33B-202ENST00000535906 HMGXB3Q12766 1538 aa21.26■□□□□ 0.99
VPS33B-202ENST00000535906 RUSC2Q8N2Y8 1516 aa21.23■□□□□ 0.99
VPS33B-202ENST00000535906 SYNJ1O43426 1573 aa21.23■□□□□ 0.99
VPS33B-202ENST00000535906 EEA1Q15075 1411 aa21.19■□□□□ 0.98
VPS33B-202ENST00000535906 CSRNP3Q8WYN3 585 aa21.17■□□□□ 0.98
VPS33B-202ENST00000535906 TNIKQ9UKE5 1360 aa21.06■□□□□ 0.96
VPS33B-202ENST00000535906 CEP162Q5TB80 1403 aa21.03■□□□□ 0.96
VPS33B-202ENST00000535906 TOP2BQ02880 1626 aa21.03■□□□□ 0.96
VPS33B-202ENST00000535906 UBTFP17480 764 aaKnown RBP21■□□□□ 0.95
VPS33B-202ENST00000535906 CFTRP13569 1480 aa21■□□□□ 0.95
VPS33B-202ENST00000535906 GOLGA3Q08378 1498 aa21■□□□□ 0.95
VPS33B-202ENST00000535906 PPARGC1BQ86YN6 1023 aaKnown RBP20.99■□□□□ 0.95
VPS33B-202ENST00000535906 BIVM-ERCC5R4GMW8 1640 aa20.98■□□□□ 0.95
VPS33B-202ENST00000535906 CC2D2AQ9P2K1 1620 aa20.94■□□□□ 0.94
VPS33B-202ENST00000535906 CEP164Q9UPV0 1460 aa20.93■□□□□ 0.94
VPS33B-202ENST00000535906 KIF21BO75037 1637 aa20.93■□□□□ 0.94
VPS33B-202ENST00000535906 CUX1P39880 1505 aa20.9■□□□□ 0.94
VPS33B-202ENST00000535906 PRDM2Q13029 1718 aa20.84■□□□□ 0.93
VPS33B-202ENST00000535906 RAPGEF2Q9Y4G8 1499 aa20.82■□□□□ 0.92
VPS33B-202ENST00000535906 CADPSQ9ULU8 1353 aa20.82■□□□□ 0.92
VPS33B-202ENST00000535906 ZEB1P37275 1124 aaPredicted RBP20.74■□□□□ 0.91
VPS33B-202ENST00000535906 CLIP1P30622 1438 aa20.73■□□□□ 0.91
VPS33B-202ENST00000535906 TTBK1Q5TCY1 1321 aaPredicted RBP20.71■□□□□ 0.91
VPS33B-202ENST00000535906 PRXQ9BXM0 1461 aa20.71■□□□□ 0.91
VPS33B-202ENST00000535906 KIF27Q86VH2 1401 aa20.69■□□□□ 0.9
VPS33B-202ENST00000535906 ERICH3Q5RHP9 1530 aa20.67■□□□□ 0.9
VPS33B-202ENST00000535906 RANGAP1P46060 587 aaPredicted RBP20.63■□□□□ 0.89
VPS33B-202ENST00000535906 FANCD2Q9BXW9 1451 aa20.61■□□□□ 0.89
VPS33B-202ENST00000535906 VPS8Q8N3P4 1428 aa20.6■□□□□ 0.89
VPS33B-202ENST00000535906 FGD5Q6ZNL6 1462 aa20.58■□□□□ 0.88
VPS33B-202ENST00000535906 NESP48681 1621 aa20.57■□□□□ 0.88
VPS33B-202ENST00000535906 CUX2O14529 1486 aa20.57■□□□□ 0.88
VPS33B-202ENST00000535906 IGF1RP08069 1367 aa20.52■□□□□ 0.87
VPS33B-202ENST00000535906 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.51■□□□□ 0.87
VPS33B-202ENST00000535906 DNAJC5BQ9UF47 199 aa20.47■□□□□ 0.87
VPS33B-202ENST00000535906 DNMBPQ6XZF7 1577 aa20.46■□□□□ 0.87
VPS33B-202ENST00000535906 ARAP1Q96P48 1450 aa20.46■□□□□ 0.87
VPS33B-202ENST00000535906 LAMC3Q9Y6N6 1575 aa20.44■□□□□ 0.86
VPS33B-202ENST00000535906 TOPBP1Q92547 1522 aa20.44■□□□□ 0.86
VPS33B-202ENST00000535906 APLP2Q06481 763 aa20.44■□□□□ 0.86
VPS33B-202ENST00000535906 CCER1Q8TC90 406 aaPredicted RBP20.42■□□□□ 0.86
VPS33B-202ENST00000535906 CARMIL1Q5VZK9 1371 aa20.41■□□□□ 0.86
VPS33B-202ENST00000535906 RAD54L2Q9Y4B4 1467 aa20.41■□□□□ 0.86
VPS33B-202ENST00000535906 POLA1P09884 1462 aaPredicted RBP20.4■□□□□ 0.86
VPS33B-202ENST00000535906 ABCA10Q8WWZ4 1543 aa20.36■□□□□ 0.85
VPS33B-202ENST00000535906 ARHGAP35Q9NRY4 1499 aa20.36■□□□□ 0.85
VPS33B-202ENST00000535906 URB2Q14146 1524 aaKnown RBP20.34■□□□□ 0.85
VPS33B-202ENST00000535906 PDS5BQ9NTI5 1447 aa20.3■□□□□ 0.84
VPS33B-202ENST00000535906 HNRNPUL2Q1KMD3 747 aaKnown RBP20.26■□□□□ 0.83
VPS33B-202ENST00000535906 KANK4Q5T7N3 995 aaPredicted RBP20.26■□□□□ 0.83
VPS33B-202ENST00000535906 KIF21AQ7Z4S6 1674 aa20.24■□□□□ 0.83
VPS33B-202ENST00000535906 WDR97A6NE52 1622 aa20.23■□□□□ 0.83
VPS33B-202ENST00000535906 CUL7Q14999 1698 aa20.19■□□□□ 0.82
VPS33B-202ENST00000535906 TDRD9Q8NDG6 1382 aaKnown RBP20.17■□□□□ 0.82
VPS33B-202ENST00000535906 ABCA5Q8WWZ7 1642 aa20.14■□□□□ 0.82
VPS33B-202ENST00000535906 GAPVD1Q14C86 1478 aa20.12■□□□□ 0.81
VPS33B-202ENST00000535906 P3H3Q8IVL6 736 aa20.1■□□□□ 0.81
VPS33B-202ENST00000535906 CTTNBP2Q8WZ74 1663 aa20.08■□□□□ 0.8
VPS33B-202ENST00000535906 TARBP1Q13395 1621 aaKnown RBP20.08■□□□□ 0.8
VPS33B-202ENST00000535906 RRBP1Q9P2E9 1410 aaKnown RBP20.07■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms