RNA–Protein interactions for RNA: ENST00000535717.1

CHD4-203, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 2

Gene CHD4, Length 660 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-203ENST00000535717 ARHGEF11O15085 1522 aa19.97■□□□□ 0.79
CHD4-203ENST00000535717 RIMBP3CA6NJZ7 1639 aa19.95■□□□□ 0.78
CHD4-203ENST00000535717 RIMBP3BA6NNM3 1639 aa19.95■□□□□ 0.78
CHD4-203ENST00000535717 SHROOM2Q13796 1616 aa19.95■□□□□ 0.78
CHD4-203ENST00000535717 RIMBP3Q9UFD9 1639 aa19.95■□□□□ 0.78
CHD4-203ENST00000535717 JPH4Q96JJ6 628 aa19.94■□□□□ 0.78
CHD4-203ENST00000535717 KIF21BO75037 1637 aa19.93■□□□□ 0.78
CHD4-203ENST00000535717 IQGAP2Q13576 1575 aa19.9■□□□□ 0.78
CHD4-203ENST00000535717 ERCC6L2Q5T890 1561 aa19.89■□□□□ 0.77
CHD4-203ENST00000535717 PRG4Q92954 1404 aaPredicted RBP19.88■□□□□ 0.77
CHD4-203ENST00000535717 CTTNBP2Q8WZ74 1663 aa19.87■□□□□ 0.77
CHD4-203ENST00000535717 EHMT2Q96KQ7 1210 aa19.85■□□□□ 0.77
CHD4-203ENST00000535717 ARAP1Q96P48 1450 aa19.84■□□□□ 0.77
CHD4-203ENST00000535717 GOLGA3Q08378 1498 aa19.83■□□□□ 0.76
CHD4-203ENST00000535717 UGGT2Q9NYU1 1516 aa19.81■□□□□ 0.76
CHD4-203ENST00000535717 CYB5RLQ6IPT4 315 aa19.79■□□□□ 0.76
CHD4-203ENST00000535717 UBTFP17480 764 aaKnown RBP19.77■□□□□ 0.76
CHD4-203ENST00000535717 DISP1Q96F81 1524 aa19.76■□□□□ 0.75
CHD4-203ENST00000535717 CARMIL2Q6F5E8 1435 aa19.76■□□□□ 0.75
CHD4-203ENST00000535717 KIAA0556O60303 1618 aa19.71■□□□□ 0.75
CHD4-203ENST00000535717 TNIKQ9UKE5 1360 aa19.69■□□□□ 0.74
CHD4-203ENST00000535717 RANGAP1P46060 587 aaPredicted RBP19.68■□□□□ 0.74
CHD4-203ENST00000535717 PTPRGP23470 1445 aa19.67■□□□□ 0.74
CHD4-203ENST00000535717 SAMD9Q5K651 1589 aa19.66■□□□□ 0.74
CHD4-203ENST00000535717 TTBK1Q5TCY1 1321 aaPredicted RBP19.65■□□□□ 0.74
CHD4-203ENST00000535717 P3H3Q8IVL6 736 aa19.64■□□□□ 0.73
CHD4-203ENST00000535717 LOC105371045A0A1W2PR82 267 aa19.62■□□□□ 0.73
CHD4-203ENST00000535717 EFCAB5A4FU69 1503 aa19.59■□□□□ 0.73
CHD4-203ENST00000535717 FHOD3Q2V2M9 1422 aa19.56■□□□□ 0.72
CHD4-203ENST00000535717 ADCY10Q96PN6 1610 aa19.55■□□□□ 0.72
CHD4-203ENST00000535717 ARHGAP35Q9NRY4 1499 aa19.54■□□□□ 0.72
CHD4-203ENST00000535717 UACAQ9BZF9 1416 aa19.53■□□□□ 0.72
CHD4-203ENST00000535717 UHRF1BP1LA0JNW5 1464 aa19.51■□□□□ 0.71
CHD4-203ENST00000535717 PLB1Q6P1J6 1458 aa19.51■□□□□ 0.71
CHD4-203ENST00000535717 ABCC2Q92887 1545 aa19.5■□□□□ 0.71
CHD4-203ENST00000535717 CLIP1P30622 1438 aa19.5■□□□□ 0.71
CHD4-203ENST00000535717 ABCA8O94911 1581 aa19.49■□□□□ 0.71
CHD4-203ENST00000535717 CEP162Q5TB80 1403 aa19.45■□□□□ 0.7
CHD4-203ENST00000535717 NPM1P06748 294 aaKnown RBP eCLIP19.45■□□□□ 0.7
CHD4-203ENST00000535717 KDM5BQ9UGL1 1544 aa19.41■□□□□ 0.7
CHD4-203ENST00000535717 RAPGEF6Q8TEU7 1601 aa19.41■□□□□ 0.7
CHD4-203ENST00000535717 FMN1Q68DA7 1419 aa19.41■□□□□ 0.7
CHD4-203ENST00000535717 ZCCHC11Q5TAX3 1644 aaKnown RBP19.37■□□□□ 0.69
CHD4-203ENST00000535717 MAPKBP1O60336 1514 aa19.37■□□□□ 0.69
CHD4-203ENST00000535717 NUP153P49790 1475 aaKnown RBP19.36■□□□□ 0.69
CHD4-203ENST00000535717 ARID3CA6NKF2 412 aa19.36■□□□□ 0.69
CHD4-203ENST00000535717 ATP10BO94823 1461 aa19.35■□□□□ 0.69
CHD4-203ENST00000535717 ASXL2Q76L83 1435 aa19.33■□□□□ 0.68
CHD4-203ENST00000535717 TRHP20396 242 aaPredicted RBP19.31■□□□□ 0.68
CHD4-203ENST00000535717 ATP1B4Q9UN42 357 aaPredicted RBP19.3■□□□□ 0.68
CHD4-203ENST00000535717 CASKIN1Q8WXD9 1431 aa19.3■□□□□ 0.68
CHD4-203ENST00000535717 PCF11O94913 1555 aaKnown RBP19.29■□□□□ 0.68
CHD4-203ENST00000535717 HECW1Q76N89 1606 aa19.29■□□□□ 0.68
CHD4-203ENST00000535717 ABCC10Q5T3U5 1492 aa19.27■□□□□ 0.67
CHD4-203ENST00000535717 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.26■□□□□ 0.67
CHD4-203ENST00000535717 HNRNPUL2Q1KMD3 747 aaKnown RBP19.26■□□□□ 0.67
CHD4-203ENST00000535717 EPRSP07814 1512 aaKnown RBP19.25■□□□□ 0.67
CHD4-203ENST00000535717 CDK13Q14004 1512 aaKnown RBP19.25■□□□□ 0.67
CHD4-203ENST00000535717 FYCO1Q9BQS8 1478 aa19.25■□□□□ 0.67
CHD4-203ENST00000535717 WDR7Q9Y4E6 1490 aa19.25■□□□□ 0.67
CHD4-203ENST00000535717 DIP2BQ9P265 1576 aa19.24■□□□□ 0.67
CHD4-203ENST00000535717 KIF13AQ9H1H9 1805 aa19.23■□□□□ 0.67
CHD4-203ENST00000535717 LRRIQ1Q96JM4 1722 aa19.22■□□□□ 0.67
CHD4-203ENST00000535717 FAM69CQ0P6D2 419 aa19.22■□□□□ 0.67
CHD4-203ENST00000535717 VPS8Q8N3P4 1428 aa19.2■□□□□ 0.66
CHD4-203ENST00000535717 KCNH8Q96L42 1107 aa19.19■□□□□ 0.66
CHD4-203ENST00000535717 CCDC18Q5T9S5 1454 aa19.18■□□□□ 0.66
CHD4-203ENST00000535717 PLEKHD1A6NEE1 506 aa19.18■□□□□ 0.66
CHD4-203ENST00000535717 GLI2P10070 1586 aa19.17■□□□□ 0.66
CHD4-203ENST00000535717 CDK11AQ9UQ88 783 aaPredicted RBP19.14■□□□□ 0.65
CHD4-203ENST00000535717 MAP3K4Q9Y6R4 1608 aa19.1■□□□□ 0.65
CHD4-203ENST00000535717 MAGI3Q5TCQ9 1506 aa19.09■□□□□ 0.65
CHD4-203ENST00000535717 TROQ12816 1431 aaPredicted RBP19.08■□□□□ 0.65
CHD4-203ENST00000535717 TSPOAP1O95153 1857 aa19.07■□□□□ 0.64
CHD4-203ENST00000535717 ABCA9Q8IUA7 1624 aa19.07■□□□□ 0.64
CHD4-203ENST00000535717 CFAP43Q8NDM7 1665 aa19.06■□□□□ 0.64
CHD4-203ENST00000535717 CD109Q6YHK3 1445 aa19.06■□□□□ 0.64
CHD4-203ENST00000535717 PPRC1Q5VV67 1664 aaKnown RBP19.04■□□□□ 0.64
CHD4-203ENST00000535717 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP19.04■□□□□ 0.64
CHD4-203ENST00000535717 KIF14Q15058 1648 aa19.03■□□□□ 0.64
CHD4-203ENST00000535717 TIAM1Q13009 1591 aa19.03■□□□□ 0.64
CHD4-203ENST00000535717 TTC37Q6PGP7 1564 aa19.02■□□□□ 0.64
CHD4-203ENST00000535717 MTUS2Q5JR59 1369 aa19.01■□□□□ 0.63
CHD4-203ENST00000535717 MAP3K1Q13233 1512 aa19■□□□□ 0.63
CHD4-203ENST00000535717 TEX14Q8IWB6 1497 aa18.97■□□□□ 0.63
CHD4-203ENST00000535717 EHBP1L1Q8N3D4 1523 aa18.97■□□□□ 0.63
CHD4-203ENST00000535717 APLP2Q06481 763 aa18.96■□□□□ 0.63
CHD4-203ENST00000535717 KANK4Q5T7N3 995 aaPredicted RBP18.96■□□□□ 0.63
CHD4-203ENST00000535717 LRRC9Q6ZRR7 1453 aa18.96■□□□□ 0.63
CHD4-203ENST00000535717 PLCH2O75038 1416 aa18.93■□□□□ 0.62
CHD4-203ENST00000535717 MYO5CQ9NQX4 1742 aa18.91■□□□□ 0.62
CHD4-203ENST00000535717 FANCAO15360 1455 aa18.89■□□□□ 0.61
CHD4-203ENST00000535717 NEO1Q92859 1461 aa18.89■□□□□ 0.61
CHD4-203ENST00000535717 ARAP3Q8WWN8 1544 aa18.89■□□□□ 0.61
CHD4-203ENST00000535717 NCOA2Q15596 1464 aa18.88■□□□□ 0.61
CHD4-203ENST00000535717 GPATCH8Q9UKJ3 1502 aaKnown RBP18.88■□□□□ 0.61
CHD4-203ENST00000535717 SUPT6HQ7KZ85 1726 aaKnown RBP18.88■□□□□ 0.61
CHD4-203ENST00000535717 CDC42BPAQ5VT25 1732 aa18.87■□□□□ 0.61
CHD4-203ENST00000535717 CCNB3Q8WWL7 1395 aa18.87■□□□□ 0.61
CHD4-203ENST00000535717 COL17A1Q9UMD9 1497 aaPredicted RBP18.87■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 66.8 ms