RNA–Protein interactions for RNA: ENST00000535717.1

CHD4-203, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 2

Gene CHD4, Length 660 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-203ENST00000535717 NISCHQ9Y2I1 1504 aa28.96■■■□□ 2.23
CHD4-203ENST00000535717 CCDC180Q9P1Z9 1646 aa25.63■■□□□ 1.69
CHD4-203ENST00000535717 ABCC9O60706 1549 aa24.91■■□□□ 1.58
CHD4-203ENST00000535717 ZCCHC6Q5VYS8 1495 aaKnown RBP24.16■■□□□ 1.46
CHD4-203ENST00000535717 DCAF8L2P0C7V8 631 aa24.12■■□□□ 1.45
CHD4-203ENST00000535717 NACADO15069 1562 aa24.05■■□□□ 1.44
CHD4-203ENST00000535717 RB1CC1Q8TDY2 1594 aa24.03■■□□□ 1.44
CHD4-203ENST00000535717 MYO15BQ96JP2 1530 aa23.97■■□□□ 1.43
CHD4-203ENST00000535717 DCAF1Q9Y4B6 1507 aa23.95■■□□□ 1.43
CHD4-203ENST00000535717 UNC13AQ9UPW8 1703 aa23.5■■□□□ 1.35
CHD4-203ENST00000535717 SCRIBQ14160 1630 aa23.42■■□□□ 1.34
CHD4-203ENST00000535717 PABPN1Q86U42 306 aaKnown RBP eCLIP23.34■■□□□ 1.332e-9■■■□□ 18.9
CHD4-203ENST00000535717 BICRAQ9NZM4 1560 aa23.32■■□□□ 1.32
CHD4-203ENST00000535717 SHROOM4Q9ULL8 1493 aa23.05■■□□□ 1.28
CHD4-203ENST00000535717 DNAJC5BQ9UF47 199 aa22.71■■□□□ 1.23
CHD4-203ENST00000535717 EIF4G1Q04637 1599 aaKnown RBP22.67■■□□□ 1.22
CHD4-203ENST00000535717 CECR2Q9BXF3 1484 aa22.55■■□□□ 1.2
CHD4-203ENST00000535717 CC2D2AQ9P2K1 1620 aa22.53■■□□□ 1.2
CHD4-203ENST00000535717 SMARCA4P51532 1647 aa22.42■■□□□ 1.18
CHD4-203ENST00000535717 BAZ1AQ9NRL2 1556 aaPredicted RBP22.42■■□□□ 1.18
CHD4-203ENST00000535717 MROH2BQ7Z745 1585 aa22.33■■□□□ 1.17
CHD4-203ENST00000535717 ATAD2BQ9ULI0 1458 aa22.25■■□□□ 1.15
CHD4-203ENST00000535717 SMARCA2P51531 1590 aa22.21■■□□□ 1.15
CHD4-203ENST00000535717 NCAPD3P42695 1498 aa22.21■■□□□ 1.15
CHD4-203ENST00000535717 PEG3Q9GZU2 1588 aa22.19■■□□□ 1.14
CHD4-203ENST00000535717 RSF1Q96T23 1441 aaPredicted RBP22.16■■□□□ 1.14
CHD4-203ENST00000535717 WIZO95785 1651 aa22.1■■□□□ 1.13
CHD4-203ENST00000535717 HMGXB3Q12766 1538 aa22.1■■□□□ 1.13
CHD4-203ENST00000535717 BAZ1BQ9UIG0 1483 aaKnown RBP22.07■■□□□ 1.12
CHD4-203ENST00000535717 TOP2AP11388 1531 aaKnown RBP21.86■■□□□ 1.09
CHD4-203ENST00000535717 SUPT5HO00267 1087 aaKnown RBP21.76■■□□□ 1.07
CHD4-203ENST00000535717 NESP48681 1621 aa21.63■■□□□ 1.05
CHD4-203ENST00000535717 CCDC88BA6NC98 1476 aa21.63■■□□□ 1.05
CHD4-203ENST00000535717 CADPSQ9ULU8 1353 aa21.58■■□□□ 1.04
CHD4-203ENST00000535717 LAMC3Q9Y6N6 1575 aa21.57■■□□□ 1.04
CHD4-203ENST00000535717 CFTRP13569 1480 aa21.49■■□□□ 1.03
CHD4-203ENST00000535717 ERCC6Q03468 1493 aa21.44■■□□□ 1.02
CHD4-203ENST00000535717 PDS5BQ9NTI5 1447 aa21.42■■□□□ 1.02
CHD4-203ENST00000535717 KIF21AQ7Z4S6 1674 aa21.36■■□□□ 1.01
CHD4-203ENST00000535717 FANCD2Q9BXW9 1451 aa21.32■■□□□ 1
CHD4-203ENST00000535717 PRDM2Q13029 1718 aa21.31■■□□□ 1
CHD4-203ENST00000535717 CEP164Q9UPV0 1460 aa21.26■□□□□ 0.99
CHD4-203ENST00000535717 THOC2Q8NI27 1593 aaKnown RBP21.23■□□□□ 0.99
CHD4-203ENST00000535717 MRC2Q9UBG0 1479 aa21.2■□□□□ 0.98
CHD4-203ENST00000535717 CUX2O14529 1486 aa21.13■□□□□ 0.97
CHD4-203ENST00000535717 WDR62O43379 1518 aa21.12■□□□□ 0.97
CHD4-203ENST00000535717 URB2Q14146 1524 aaKnown RBP21.11■□□□□ 0.97
CHD4-203ENST00000535717 TOPBP1Q92547 1522 aa21.01■□□□□ 0.95
CHD4-203ENST00000535717 ABCC8Q09428 1581 aa20.99■□□□□ 0.95
CHD4-203ENST00000535717 DNMBPQ6XZF7 1577 aa20.99■□□□□ 0.95
CHD4-203ENST00000535717 CUX1P39880 1505 aa20.94■□□□□ 0.94
CHD4-203ENST00000535717 WRNQ14191 1432 aaPredicted RBP eCLIP20.87■□□□□ 0.93
CHD4-203ENST00000535717 POLA1P09884 1462 aaPredicted RBP20.85■□□□□ 0.93
CHD4-203ENST00000535717 FGD5Q6ZNL6 1462 aa20.82■□□□□ 0.92
CHD4-203ENST00000535717 IFT140Q96RY7 1462 aa20.81■□□□□ 0.92
CHD4-203ENST00000535717 SYNJ1O43426 1573 aa20.81■□□□□ 0.92
CHD4-203ENST00000535717 TOP2BQ02880 1626 aa20.8■□□□□ 0.92
CHD4-203ENST00000535717 BIVM-ERCC5R4GMW8 1640 aa20.79■□□□□ 0.92
CHD4-203ENST00000535717 TARBP1Q13395 1621 aaKnown RBP20.77■□□□□ 0.92
CHD4-203ENST00000535717 SOGA1O94964 1423 aa20.77■□□□□ 0.91
CHD4-203ENST00000535717 RAD54L2Q9Y4B4 1467 aa20.76■□□□□ 0.91
CHD4-203ENST00000535717 ZNF608Q9ULD9 1512 aaPredicted RBP20.73■□□□□ 0.91
CHD4-203ENST00000535717 AQRO60306 1485 aaKnown RBP eCLIP20.64■□□□□ 0.89
CHD4-203ENST00000535717 TDRD9Q8NDG6 1382 aaKnown RBP20.64■□□□□ 0.89
CHD4-203ENST00000535717 EIF4G3O43432 1585 aaKnown RBP20.63■□□□□ 0.89
CHD4-203ENST00000535717 WDR97A6NE52 1622 aa20.63■□□□□ 0.89
CHD4-203ENST00000535717 ABCA10Q8WWZ4 1543 aa20.63■□□□□ 0.89
CHD4-203ENST00000535717 TRIM41Q8WV44 630 aa20.53■□□□□ 0.88
CHD4-203ENST00000535717 GAPVD1Q14C86 1478 aa20.53■□□□□ 0.88
CHD4-203ENST00000535717 ABCA5Q8WWZ7 1642 aa20.53■□□□□ 0.88
CHD4-203ENST00000535717 GRIN2BQ13224 1484 aa20.5■□□□□ 0.87
CHD4-203ENST00000535717 PBRM1Q86U86 1689 aa20.45■□□□□ 0.86
CHD4-203ENST00000535717 SNAPC4Q5SXM2 1469 aa20.44■□□□□ 0.86
CHD4-203ENST00000535717 CHIC1Q5VXU3 224 aa20.44■□□□□ 0.86
CHD4-203ENST00000535717 KIF27Q86VH2 1401 aa20.41■□□□□ 0.86
CHD4-203ENST00000535717 MAGI1Q96QZ7 1491 aaPredicted RBP20.41■□□□□ 0.86
CHD4-203ENST00000535717 ERICH3Q5RHP9 1530 aa20.37■□□□□ 0.85
CHD4-203ENST00000535717 FBLN2P98095 1184 aa20.34■□□□□ 0.85
CHD4-203ENST00000535717 CHD1O14646 1710 aa20.33■□□□□ 0.85
CHD4-203ENST00000535717 SYNJ2O15056 1496 aa20.33■□□□□ 0.85
CHD4-203ENST00000535717 IGF1RP08069 1367 aa20.33■□□□□ 0.84
CHD4-203ENST00000535717 RUSC2Q8N2Y8 1516 aa20.32■□□□□ 0.84
CHD4-203ENST00000535717 ADAMTS12P58397 1594 aa20.31■□□□□ 0.84
CHD4-203ENST00000535717 OSCARQ8IYS5 282 aa20.31■□□□□ 0.84
CHD4-203ENST00000535717 CHMP7Q8WUX9 453 aaPredicted RBP20.31■□□□□ 0.84
CHD4-203ENST00000535717 FHAD1B1AJZ9 1412 aa20.29■□□□□ 0.84
CHD4-203ENST00000535717 DNAJC5Q9H3Z4 198 aa20.26■□□□□ 0.83
CHD4-203ENST00000535717 GRIN2AQ12879 1464 aa20.23■□□□□ 0.83
CHD4-203ENST00000535717 CUL7Q14999 1698 aa20.22■□□□□ 0.83
CHD4-203ENST00000535717 CARMIL1Q5VZK9 1371 aa20.2■□□□□ 0.82
CHD4-203ENST00000535717 EEA1Q15075 1411 aa20.14■□□□□ 0.81
CHD4-203ENST00000535717 NUP160Q12769 1436 aa20.13■□□□□ 0.81
CHD4-203ENST00000535717 CEP170Q5SW79 1584 aa20.12■□□□□ 0.81
CHD4-203ENST00000535717 CLASP1Q7Z460 1538 aa20.12■□□□□ 0.81
CHD4-203ENST00000535717 FAM9AQ8IZU1 332 aaPredicted RBP20.12■□□□□ 0.81
CHD4-203ENST00000535717 CSRNP3Q8WYN3 585 aa20.12■□□□□ 0.81
CHD4-203ENST00000535717 PRXQ9BXM0 1461 aa20.09■□□□□ 0.81
CHD4-203ENST00000535717 RAPGEF2Q9Y4G8 1499 aa20.09■□□□□ 0.81
CHD4-203ENST00000535717 AEBP2Q6ZN18 517 aaPredicted RBP20.04■□□□□ 0.8
CHD4-203ENST00000535717 KIAA0586Q9BVV6 1533 aa19.99■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 98.7 ms