RNA–Protein interactions for RNA: ENST00000532737.1

USP48-214, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 680 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-214ENST00000532737 EEA1Q15075 1411 aa41.44■■■■■ 4.22
USP48-214ENST00000532737 FAM9AQ8IZU1 332 aaPredicted RBP41.41■■■■■ 4.22
USP48-214ENST00000532737 RAPGEF2Q9Y4G8 1499 aa41.39■■■■■ 4.22
USP48-214ENST00000532737 PRXQ9BXM0 1461 aa41.35■■■■■ 4.21
USP48-214ENST00000532737 TRHP20396 242 aaPredicted RBP41.35■■■■■ 4.21
USP48-214ENST00000532737 KIAA0586Q9BVV6 1533 aa41.22■■■■■ 4.19
USP48-214ENST00000532737 JPH4Q96JJ6 628 aa41.17■■■■■ 4.18
USP48-214ENST00000532737 ERCC6L2Q5T890 1561 aa41.15■■■■■ 4.18
USP48-214ENST00000532737 SHROOM2Q13796 1616 aa41.13■■■■■ 4.17
USP48-214ENST00000532737 PRG4Q92954 1404 aaPredicted RBP41.03■■■■■ 4.16
USP48-214ENST00000532737 IQGAP2Q13576 1575 aa40.99■■■■■ 4.15
USP48-214ENST00000532737 KIF21BO75037 1637 aa40.96■■■■■ 4.15
USP48-214ENST00000532737 CTTNBP2Q8WZ74 1663 aa40.87■■■■■ 4.13
USP48-214ENST00000532737 EHMT2Q96KQ7 1210 aa40.86■■■■■ 4.13
USP48-214ENST00000532737 UGGT2Q9NYU1 1516 aa40.81■■■■■ 4.12
USP48-214ENST00000532737 GOLGA3Q08378 1498 aa40.78■■■■■ 4.12
USP48-214ENST00000532737 CARMIL2Q6F5E8 1435 aa40.75■■■■■ 4.11
USP48-214ENST00000532737 DISP1Q96F81 1524 aa40.74■■■■■ 4.11
USP48-214ENST00000532737 UBTFP17480 764 aaKnown RBP40.71■■■■■ 4.11
USP48-214ENST00000532737 TNIKQ9UKE5 1360 aa40.62■■■■■ 4.09
USP48-214ENST00000532737 KIAA0556O60303 1618 aa40.6■■■■■ 4.09
USP48-214ENST00000532737 PTPRGP23470 1445 aa40.59■■■■■ 4.09
USP48-214ENST00000532737 TTBK1Q5TCY1 1321 aaPredicted RBP40.59■■■■■ 4.09
USP48-214ENST00000532737 KIF13AQ9H1H9 1805 aa40.58■■■■■ 4.09
USP48-214ENST00000532737 RANGAP1P46060 587 aaPredicted RBP40.57■■■■■ 4.09
USP48-214ENST00000532737 P3H3Q8IVL6 736 aa40.49■■■■■ 4.07
USP48-214ENST00000532737 SAMD9Q5K651 1589 aa40.44■■■■■ 4.06
USP48-214ENST00000532737 ADCY10Q96PN6 1610 aa40.38■■■■■ 4.05
USP48-214ENST00000532737 LOC105371045A0A1W2PR82 267 aa40.32■■■■■ 4.05
USP48-214ENST00000532737 UACAQ9BZF9 1416 aa40.32■■■■■ 4.04
USP48-214ENST00000532737 MAPKBP1O60336 1514 aa40.31■■■■■ 4.04
USP48-214ENST00000532737 EFCAB5A4FU69 1503 aa40.3■■■■■ 4.04
USP48-214ENST00000532737 FHOD3Q2V2M9 1422 aa40.28■■■■■ 4.04
USP48-214ENST00000532737 ABCC10Q5T3U5 1492 aa40.25■■■■■ 4.03
USP48-214ENST00000532737 UHRF1BP1LA0JNW5 1464 aa40.24■■■■■ 4.03
USP48-214ENST00000532737 PLB1Q6P1J6 1458 aa40.24■■■■■ 4.03
USP48-214ENST00000532737 ARHGAP35Q9NRY4 1499 aa40.23■■■■■ 4.03
USP48-214ENST00000532737 DIP2BQ9P265 1576 aa40.21■■■■■ 4.03
USP48-214ENST00000532737 NPM1P06748 294 aaKnown RBP eCLIP40.2■■■■■ 4.03
USP48-214ENST00000532737 ABCC2Q92887 1545 aa40.2■■■■■ 4.03
USP48-214ENST00000532737 ABCA8O94911 1581 aa40.17■■■■■ 4.02
USP48-214ENST00000532737 AEBP2Q6ZN18 517 aaPredicted RBP40.14■■■■■ 4.02
USP48-214ENST00000532737 FAM69CQ0P6D2 419 aa40.11■■■■■ 4.01
USP48-214ENST00000532737 CLIP1P30622 1438 aa40.09■■■■■ 4.01
USP48-214ENST00000532737 KDM5BQ9UGL1 1544 aa40.05■■■■■ 4
USP48-214ENST00000532737 CEP162Q5TB80 1403 aa39.99■■■■□ 3.99
USP48-214ENST00000532737 RAPGEF6Q8TEU7 1601 aa39.98■■■■□ 3.99
USP48-214ENST00000532737 TSPOAP1O95153 1857 aa39.96■■■■□ 3.99
USP48-214ENST00000532737 FMN1Q68DA7 1419 aa39.96■■■■□ 3.99
USP48-214ENST00000532737 ARID3CA6NKF2 412 aa39.95■■■■□ 3.99
USP48-214ENST00000532737 ZCCHC11Q5TAX3 1644 aaKnown RBP39.92■■■■□ 3.98
USP48-214ENST00000532737 NUP153P49790 1475 aaKnown RBP39.89■■■■□ 3.98
USP48-214ENST00000532737 ASXL2Q76L83 1435 aa39.89■■■■□ 3.98
USP48-214ENST00000532737 ATP10BO94823 1461 aa39.88■■■■□ 3.98
USP48-214ENST00000532737 KDM6BO15054 1643 aa39.84■■■■□ 3.97
USP48-214ENST00000532737 ATP1B4Q9UN42 357 aaPredicted RBP39.79■■■■□ 3.96
USP48-214ENST00000532737 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP39.75■■■■□ 3.95
USP48-214ENST00000532737 HNRNPUL2Q1KMD3 747 aaKnown RBP39.75■■■■□ 3.95
USP48-214ENST00000532737 GLI2P10070 1586 aa39.73■■■■□ 3.95
USP48-214ENST00000532737 PPRC1Q5VV67 1664 aaKnown RBP39.73■■■■□ 3.95
USP48-214ENST00000532737 WDR7Q9Y4E6 1490 aa39.71■■■■□ 3.95
USP48-214ENST00000532737 CASKIN1Q8WXD9 1431 aa39.71■■■■□ 3.95
USP48-214ENST00000532737 HECW1Q76N89 1606 aa39.69■■■■□ 3.94
USP48-214ENST00000532737 PCF11O94913 1555 aaKnown RBP39.67■■■■□ 3.94
USP48-214ENST00000532737 EPRSP07814 1512 aaKnown RBP39.65■■■■□ 3.94
USP48-214ENST00000532737 CDK13Q14004 1512 aaKnown RBP39.65■■■■□ 3.94
USP48-214ENST00000532737 KCNH8Q96L42 1107 aa39.63■■■■□ 3.93
USP48-214ENST00000532737 FYCO1Q9BQS8 1478 aa39.6■■■■□ 3.93
USP48-214ENST00000532737 PLEKHD1A6NEE1 506 aa39.57■■■■□ 3.93
USP48-214ENST00000532737 MAP3K4Q9Y6R4 1608 aa39.55■■■■□ 3.92
USP48-214ENST00000532737 LRRIQ1Q96JM4 1722 aa39.51■■■■□ 3.91
USP48-214ENST00000532737 VPS8Q8N3P4 1428 aa39.48■■■■□ 3.91
USP48-214ENST00000532737 CCDC18Q5T9S5 1454 aa39.47■■■■□ 3.91
USP48-214ENST00000532737 CDK11AQ9UQ88 783 aaPredicted RBP39.45■■■■□ 3.91
USP48-214ENST00000532737 KDM4FA0A1W2PPD8 638 aa39.43■■■■□ 3.9
USP48-214ENST00000532737 COL17A1Q9UMD9 1497 aaPredicted RBP39.36■■■■□ 3.89
USP48-214ENST00000532737 CD109Q6YHK3 1445 aa39.34■■■■□ 3.89
USP48-214ENST00000532737 TROQ12816 1431 aaPredicted RBP39.33■■■■□ 3.89
USP48-214ENST00000532737 TEX14Q8IWB6 1497 aa39.33■■■■□ 3.89
USP48-214ENST00000532737 ABCA9Q8IUA7 1624 aa39.29■■■■□ 3.88
USP48-214ENST00000532737 MAGI3Q5TCQ9 1506 aa39.29■■■■□ 3.88
USP48-214ENST00000532737 CFAP43Q8NDM7 1665 aa39.28■■■■□ 3.88
USP48-214ENST00000532737 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP39.24■■■■□ 3.874e-9■■■□□ 14.6
USP48-214ENST00000532737 KIF14Q15058 1648 aa39.18■■■■□ 3.86
USP48-214ENST00000532737 TTC37Q6PGP7 1564 aa39.17■■■■□ 3.86
USP48-214ENST00000532737 MTUS2Q5JR59 1369 aa39.15■■■■□ 3.86
USP48-214ENST00000532737 ADGRL1O94910 1474 aa39.13■■■■□ 3.85
USP48-214ENST00000532737 TIAM1Q13009 1591 aa39.12■■■■□ 3.85
USP48-214ENST00000532737 MAP3K1Q13233 1512 aa39.06■■■■□ 3.84
USP48-214ENST00000532737 PLCH2O75038 1416 aa39.04■■■■□ 3.84
USP48-214ENST00000532737 EHBP1L1Q8N3D4 1523 aa39.03■■■■□ 3.84
USP48-214ENST00000532737 APLP2Q06481 763 aa39.01■■■■□ 3.84
USP48-214ENST00000532737 KANK4Q5T7N3 995 aaPredicted RBP39.01■■■■□ 3.84
USP48-214ENST00000532737 LRRC9Q6ZRR7 1453 aa38.98■■■■□ 3.83
USP48-214ENST00000532737 NEO1Q92859 1461 aa38.97■■■■□ 3.83
USP48-214ENST00000532737 FANCAO15360 1455 aa38.95■■■■□ 3.83
USP48-214ENST00000532737 PHLDB1Q86UU1 1377 aa38.94■■■■□ 3.82
USP48-214ENST00000532737 MYO5CQ9NQX4 1742 aa38.92■■■■□ 3.82
USP48-214ENST00000532737 EFCAB2Q5VUJ9 269 aa38.91■■■■□ 3.82
USP48-214ENST00000532737 ARAP3Q8WWN8 1544 aa38.9■■■■□ 3.82
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms