RNA–Protein interactions for RNA: ENST00000522012.5

R3HCC1-208, Transcript of R3H domain and coiled-coil containing 1, human

TSL 1 (best)

Gene R3HCC1, Length 1,500 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
R3HCC1-208	ENST00000522012	CEP162	Q5TB80	1403 aa		34.23	■■■■□ 3.07
R3HCC1-208	ENST00000522012	OSCAR	Q8IYS5	282 aa		34.15	■■■■□ 3.06
R3HCC1-208	ENST00000522012	CLIP1	P30622	1438 aa		34.12	■■■■□ 3.05
R3HCC1-208	ENST00000522012	CTTNBP2	Q8WZ74	1663 aa		34.09	■■■■□ 3.05
R3HCC1-208	ENST00000522012	NUP160	Q12769	1436 aa		34.08	■■■■□ 3.05
R3HCC1-208	ENST00000522012	CEP170	Q5SW79	1584 aa		34.06	■■■■□ 3.04
R3HCC1-208	ENST00000522012	CHD1	O14646	1710 aa		34.06	■■■■□ 3.04
R3HCC1-208	ENST00000522012	KIAA0586	Q9BVV6	1533 aa		34.06	■■■■□ 3.04
R3HCC1-208	ENST00000522012	IQGAP2	Q13576	1575 aa		34	■■■■□ 3.03
R3HCC1-208	ENST00000522012	ARHGAP35	Q9NRY4	1499 aa		33.92	■■■■□ 3.02
R3HCC1-208	ENST00000522012	P3H3	Q8IVL6	736 aa		33.9	■■■■□ 3.02
R3HCC1-208	ENST00000522012	JPH4	Q96JJ6	628 aa		33.88	■■■■□ 3.01
R3HCC1-208	ENST00000522012	UGGT2	Q9NYU1	1516 aa		33.84	■■■■□ 3.01
R3HCC1-208	ENST00000522012	EFCAB5	A4FU69	1503 aa		33.83	■■■■□ 3.01
R3HCC1-208	ENST00000522012	ARAP1	Q96P48	1450 aa		33.82	■■■■□ 3
R3HCC1-208	ENST00000522012	FHOD3	Q2V2M9	1422 aa		33.77	■■■■□ 3
R3HCC1-208	ENST00000522012	SAMD9	Q5K651	1589 aa		33.76	■■■□□ 2.99
R3HCC1-208	ENST00000522012	CLASP1	Q7Z460	1538 aa		33.74	■■■□□ 2.99
R3HCC1-208	ENST00000522012	DISP1	Q96F81	1524 aa		33.71	■■■□□ 2.99
R3HCC1-208	ENST00000522012	VPS8	Q8N3P4	1428 aa		33.71	■■■□□ 2.99
R3HCC1-208	ENST00000522012	CARMIL2	Q6F5E8	1435 aa		33.69	■■■□□ 2.98
R3HCC1-208	ENST00000522012	RIMBP3C	A6NJZ7	1639 aa		33.68	■■■□□ 2.98
R3HCC1-208	ENST00000522012	RIMBP3B	A6NNM3	1639 aa		33.68	■■■□□ 2.98
R3HCC1-208	ENST00000522012	RIMBP3	Q9UFD9	1639 aa		33.68	■■■□□ 2.98
R3HCC1-208	ENST00000522012	PRG4	Q92954	1404 aa	Predicted RBP	33.68	■■■□□ 2.98
R3HCC1-208	ENST00000522012	KIAA0556	O60303	1618 aa		33.65	■■■□□ 2.98
R3HCC1-208	ENST00000522012	SHROOM2	Q13796	1616 aa		33.61	■■■□□ 2.97
R3HCC1-208	ENST00000522012	TTBK1	Q5TCY1	1321 aa	Predicted RBP	33.61	■■■□□ 2.97
R3HCC1-208	ENST00000522012	FMN1	Q68DA7	1419 aa		33.58	■■■□□ 2.97
R3HCC1-208	ENST00000522012	ARHGEF11	O15085	1522 aa		33.58	■■■□□ 2.97
R3HCC1-208	ENST00000522012	ATP1B4	Q9UN42	357 aa	Predicted RBP	33.5	■■■□□ 2.95
R3HCC1-208	ENST00000522012	ERCC6L2	Q5T890	1561 aa		33.47	■■■□□ 2.95
R3HCC1-208	ENST00000522012	APLP2	Q06481	763 aa		33.47	■■■□□ 2.95
R3HCC1-208	ENST00000522012	CASKIN1	Q8WXD9	1431 aa		33.44	■■■□□ 2.94
R3HCC1-208	ENST00000522012	PTPRG	P23470	1445 aa		33.43	■■■□□ 2.94
R3HCC1-208	ENST00000522012	PCF11	O94913	1555 aa	Known RBP	33.41	■■■□□ 2.94
R3HCC1-208	ENST00000522012	FYCO1	Q9BQS8	1478 aa		33.39	■■■□□ 2.94
R3HCC1-208	ENST00000522012	PPARGC1B	Q86YN6	1023 aa	Known RBP	33.37	■■■□□ 2.93
R3HCC1-208	ENST00000522012	CYB5RL	Q6IPT4	315 aa		33.34	■■■□□ 2.93
R3HCC1-208	ENST00000522012	PLB1	Q6P1J6	1458 aa		33.31	■■■□□ 2.92
R3HCC1-208	ENST00000522012	RAPGEF6	Q8TEU7	1601 aa		33.25	■■■□□ 2.91
R3HCC1-208	ENST00000522012	ARID3C	A6NKF2	412 aa		33.24	■■■□□ 2.91
R3HCC1-208	ENST00000522012	HECW1	Q76N89	1606 aa		33.23	■■■□□ 2.91
R3HCC1-208	ENST00000522012	ABCA8	O94911	1581 aa		33.21	■■■□□ 2.91
R3HCC1-208	ENST00000522012	UACA	Q9BZF9	1416 aa		33.21	■■■□□ 2.91
R3HCC1-208	ENST00000522012	NUP153	P49790	1475 aa	Known RBP	33.19	■■■□□ 2.9
R3HCC1-208	ENST00000522012	MAP3K1	Q13233	1512 aa		33.19	■■■□□ 2.9
R3HCC1-208	ENST00000522012	KANK4	Q5T7N3	995 aa	Predicted RBP	33.18	■■■□□ 2.9
R3HCC1-208	ENST00000522012	TIAM1	Q13009	1591 aa		33.17	■■■□□ 2.9
R3HCC1-208	ENST00000522012	EPRS	P07814	1512 aa	Known RBP	33.16	■■■□□ 2.9
R3HCC1-208	ENST00000522012	CCDC18	Q5T9S5	1454 aa		33.16	■■■□□ 2.9
R3HCC1-208	ENST00000522012	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	33.14	■■■□□ 2.9
R3HCC1-208	ENST00000522012	HNRNPUL2	Q1KMD3	747 aa	Known RBP	33.14	■■■□□ 2.9
R3HCC1-208	ENST00000522012	CDK13	Q14004	1512 aa	Known RBP	33.1	■■■□□ 2.89
R3HCC1-208	ENST00000522012	CFAP43	Q8NDM7	1665 aa		33.08	■■■□□ 2.89
R3HCC1-208	ENST00000522012	LRRIQ1	Q96JM4	1722 aa		33.07	■■■□□ 2.89
R3HCC1-208	ENST00000522012	ABCC2	Q92887	1545 aa		33.07	■■■□□ 2.88
R3HCC1-208	ENST00000522012	LRRC9	Q6ZRR7	1453 aa		33.06	■■■□□ 2.88
R3HCC1-208	ENST00000522012	UHRF1BP1L	A0JNW5	1464 aa		33.03	■■■□□ 2.88
R3HCC1-208	ENST00000522012	TRH	P20396	242 aa	Predicted RBP	33.03	■■■□□ 2.88
R3HCC1-208	ENST00000522012	ATP10B	O94823	1461 aa		33.03	■■■□□ 2.88
R3HCC1-208	ENST00000522012	MTUS2	Q5JR59	1369 aa		33.03	■■■□□ 2.88
R3HCC1-208	ENST00000522012	CDK11A	Q9UQ88	783 aa	Predicted RBP	33.01	■■■□□ 2.87
R3HCC1-208	ENST00000522012	ADCY10	Q96PN6	1610 aa		32.92	■■■□□ 2.86
R3HCC1-208	ENST00000522012	MAGI3	Q5TCQ9	1506 aa		32.92	■■■□□ 2.86
R3HCC1-208	ENST00000522012	PLEKHD1	A6NEE1	506 aa		32.92	■■■□□ 2.86
R3HCC1-208	ENST00000522012	EHBP1L1	Q8N3D4	1523 aa		32.9	■■■□□ 2.86
R3HCC1-208	ENST00000522012	KDM5B	Q9UGL1	1544 aa		32.89	■■■□□ 2.86
R3HCC1-208	ENST00000522012	TRIM26	Q12899	539 aa	Predicted RBP	32.86	■■■□□ 2.85
R3HCC1-208	ENST00000522012	NPM1	P06748	294 aa	Known RBP eCLIP	32.85	■■■□□ 2.85
R3HCC1-208	ENST00000522012	TRO	Q12816	1431 aa	Predicted RBP	32.84	■■■□□ 2.85
R3HCC1-208	ENST00000522012	ZCCHC11	Q5TAX3	1644 aa	Known RBP	32.81	■■■□□ 2.84
R3HCC1-208	ENST00000522012	NCOA2	Q15596	1464 aa		32.77	■■■□□ 2.84
R3HCC1-208	ENST00000522012	PHLDB1	Q86UU1	1377 aa		32.75	■■■□□ 2.83
R3HCC1-208	ENST00000522012	SUPT6H	Q7KZ85	1726 aa	Known RBP	32.74	■■■□□ 2.83
R3HCC1-208	ENST00000522012	PCGF6	Q9BYE7	350 aa		32.7	■■■□□ 2.83
R3HCC1-208	ENST00000522012	KCNH8	Q96L42	1107 aa		32.69	■■■□□ 2.82
R3HCC1-208	ENST00000522012	ASXL2	Q76L83	1435 aa		32.65	■■■□□ 2.82
R3HCC1-208	ENST00000522012	KIF14	Q15058	1648 aa		32.63	■■■□□ 2.81
R3HCC1-208	ENST00000522012	CCNB3	Q8WWL7	1395 aa		32.62	■■■□□ 2.81
R3HCC1-208	ENST00000522012	WDR7	Q9Y4E6	1490 aa		32.62	■■■□□ 2.81
R3HCC1-208	ENST00000522012	MYOM3	Q5VTT5	1437 aa		32.61	■■■□□ 2.81
R3HCC1-208	ENST00000522012	RRBP1	Q9P2E9	1410 aa	Known RBP	32.59	■■■□□ 2.81
R3HCC1-208	ENST00000522012	ABCC10	Q5T3U5	1492 aa		32.55	■■■□□ 2.8
R3HCC1-208	ENST00000522012	FGD6	Q6ZV73	1430 aa		32.55	■■■□□ 2.8
R3HCC1-208	ENST00000522012	FAM50A	Q14320	339 aa	Known RBP	32.52	■■■□□ 2.8
R3HCC1-208	ENST00000522012	GPATCH8	Q9UKJ3	1502 aa	Known RBP	32.5	■■■□□ 2.79
R3HCC1-208	ENST00000522012	GEMIN5	Q8TEQ6	1508 aa	Known RBP eCLIP	32.48	■■■□□ 2.79
R3HCC1-208	ENST00000522012	CFDP1	Q9UEE9	299 aa	Predicted RBP	32.48	■■■□□ 2.79
R3HCC1-208	ENST00000522012	MAPKBP1	O60336	1514 aa		32.47	■■■□□ 2.79
R3HCC1-208	ENST00000522012	MIA2	Q96PC5	1412 aa		32.47	■■■□□ 2.79
R3HCC1-208	ENST00000522012	TTC37	Q6PGP7	1564 aa		32.43	■■■□□ 2.78
R3HCC1-208	ENST00000522012	ZNF777	Q9ULD5	760 aa	Predicted RBP	32.41	■■■□□ 2.78
R3HCC1-208	ENST00000522012	ITGAE	P38570	1179 aa		32.39	■■■□□ 2.78
R3HCC1-208	ENST00000522012	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	32.38	■■■□□ 2.77
R3HCC1-208	ENST00000522012	ITSN2	Q9NZM3	1697 aa		32.38	■■■□□ 2.77
R3HCC1-208	ENST00000522012	PTPN23	Q9H3S7	1636 aa		32.38	■■■□□ 2.77
R3HCC1-208	ENST00000522012	ZNF644	Q9H582	1327 aa	Predicted RBP	32.37	■■■□□ 2.77
R3HCC1-208	ENST00000522012	TCOF1	Q13428	1488 aa	Known RBP	32.36	■■■□□ 2.77
R3HCC1-208	ENST00000522012	PLCH2	O75038	1416 aa		32.34	■■■□□ 2.77

Retrieved 100 of 20,778 RNA–protein pairs in 168.2 ms