RNA–Protein interactions for RNA: ENST00000510187.5

SQSTM1-213, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 1,714 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-213ENST00000510187 GRIN2AQ12879 1464 aa25.06■■□□□ 1.6
SQSTM1-213ENST00000510187 PPARGC1BQ86YN6 1023 aaKnown RBP25.05■■□□□ 1.6
SQSTM1-213ENST00000510187 ZEB1P37275 1124 aaPredicted RBP25.04■■□□□ 1.6
SQSTM1-213ENST00000510187 CEP162Q5TB80 1403 aa25■■□□□ 1.59
SQSTM1-213ENST00000510187 RANGAP1P46060 587 aaPredicted RBP24.98■■□□□ 1.59
SQSTM1-213ENST00000510187 CTTNBP2Q8WZ74 1663 aa24.95■■□□□ 1.58
SQSTM1-213ENST00000510187 CHD1O14646 1710 aa24.92■■□□□ 1.58
SQSTM1-213ENST00000510187 CLIP1P30622 1438 aa24.91■■□□□ 1.58
SQSTM1-213ENST00000510187 NUP160Q12769 1436 aa24.9■■□□□ 1.58
SQSTM1-213ENST00000510187 CEP170Q5SW79 1584 aa24.9■■□□□ 1.58
SQSTM1-213ENST00000510187 KIAA0586Q9BVV6 1533 aa24.87■■□□□ 1.57
SQSTM1-213ENST00000510187 IQGAP2Q13576 1575 aa24.84■■□□□ 1.57
SQSTM1-213ENST00000510187 ARHGAP35Q9NRY4 1499 aa24.78■■□□□ 1.56
SQSTM1-213ENST00000510187 EFCAB5A4FU69 1503 aa24.73■■□□□ 1.55
SQSTM1-213ENST00000510187 UGGT2Q9NYU1 1516 aa24.72■■□□□ 1.55
SQSTM1-213ENST00000510187 P3H3Q8IVL6 736 aa24.72■■□□□ 1.55
SQSTM1-213ENST00000510187 JPH4Q96JJ6 628 aa24.71■■□□□ 1.55
SQSTM1-213ENST00000510187 ARAP1Q96P48 1450 aa24.7■■□□□ 1.54
SQSTM1-213ENST00000510187 SAMD9Q5K651 1589 aa24.68■■□□□ 1.54
SQSTM1-213ENST00000510187 OSCARQ8IYS5 282 aa24.67■■□□□ 1.54
SQSTM1-213ENST00000510187 CLASP1Q7Z460 1538 aa24.66■■□□□ 1.54
SQSTM1-213ENST00000510187 FHOD3Q2V2M9 1422 aa24.65■■□□□ 1.54
SQSTM1-213ENST00000510187 DISP1Q96F81 1524 aa24.63■■□□□ 1.53
SQSTM1-213ENST00000510187 VPS8Q8N3P4 1428 aa24.62■■□□□ 1.53
SQSTM1-213ENST00000510187 KIAA0556O60303 1618 aa24.6■■□□□ 1.53
SQSTM1-213ENST00000510187 CARMIL2Q6F5E8 1435 aa24.59■■□□□ 1.53
SQSTM1-213ENST00000510187 PRG4Q92954 1404 aaPredicted RBP24.58■■□□□ 1.53
SQSTM1-213ENST00000510187 SHROOM2Q13796 1616 aa24.58■■□□□ 1.53
SQSTM1-213ENST00000510187 FMN1Q68DA7 1419 aa24.53■■□□□ 1.52
SQSTM1-213ENST00000510187 TTBK1Q5TCY1 1321 aaPredicted RBP24.5■■□□□ 1.51
SQSTM1-213ENST00000510187 ERCC6L2Q5T890 1561 aa24.45■■□□□ 1.5
SQSTM1-213ENST00000510187 PCF11O94913 1555 aaKnown RBP24.42■■□□□ 1.5
SQSTM1-213ENST00000510187 ATP1B4Q9UN42 357 aaPredicted RBP24.42■■□□□ 1.5
SQSTM1-213ENST00000510187 CASKIN1Q8WXD9 1431 aa24.42■■□□□ 1.5
SQSTM1-213ENST00000510187 APLP2Q06481 763 aa24.41■■□□□ 1.5
SQSTM1-213ENST00000510187 FYCO1Q9BQS8 1478 aa24.39■■□□□ 1.5
SQSTM1-213ENST00000510187 PTPRGP23470 1445 aa24.39■■□□□ 1.49
SQSTM1-213ENST00000510187 PLB1Q6P1J6 1458 aa24.33■■□□□ 1.49
SQSTM1-213ENST00000510187 RAPGEF6Q8TEU7 1601 aa24.31■■□□□ 1.48
SQSTM1-213ENST00000510187 CCER1Q8TC90 406 aaPredicted RBP24.3■■□□□ 1.48
SQSTM1-213ENST00000510187 HECW1Q76N89 1606 aa24.29■■□□□ 1.48
SQSTM1-213ENST00000510187 ABCA8O94911 1581 aa24.26■■□□□ 1.47
SQSTM1-213ENST00000510187 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.25■■□□□ 1.47
SQSTM1-213ENST00000510187 MAP3K1Q13233 1512 aa24.25■■□□□ 1.47
SQSTM1-213ENST00000510187 NUP153P49790 1475 aaKnown RBP24.25■■□□□ 1.47
SQSTM1-213ENST00000510187 TIAM1Q13009 1591 aa24.24■■□□□ 1.47
SQSTM1-213ENST00000510187 ARID3CA6NKF2 412 aa24.24■■□□□ 1.47
SQSTM1-213ENST00000510187 UACAQ9BZF9 1416 aa24.24■■□□□ 1.47
SQSTM1-213ENST00000510187 ARHGEF11O15085 1522 aa24.24■■□□□ 1.47
SQSTM1-213ENST00000510187 EPRSP07814 1512 aaKnown RBP24.22■■□□□ 1.47
SQSTM1-213ENST00000510187 CCDC18Q5T9S5 1454 aa24.22■■□□□ 1.47
SQSTM1-213ENST00000510187 KANK4Q5T7N3 995 aaPredicted RBP24.21■■□□□ 1.47
SQSTM1-213ENST00000510187 LRRIQ1Q96JM4 1722 aa24.21■■□□□ 1.47
SQSTM1-213ENST00000510187 CFAP43Q8NDM7 1665 aa24.2■■□□□ 1.46
SQSTM1-213ENST00000510187 CDK13Q14004 1512 aaKnown RBP24.18■■□□□ 1.46
SQSTM1-213ENST00000510187 HNRNPUL2Q1KMD3 747 aaKnown RBP24.17■■□□□ 1.46
SQSTM1-213ENST00000510187 ABCC2Q92887 1545 aa24.16■■□□□ 1.46
SQSTM1-213ENST00000510187 LRRC9Q6ZRR7 1453 aa24.15■■□□□ 1.46
SQSTM1-213ENST00000510187 UHRF1BP1LA0JNW5 1464 aa24.13■■□□□ 1.45
SQSTM1-213ENST00000510187 RIMBP3CA6NJZ7 1639 aa24.13■■□□□ 1.45
SQSTM1-213ENST00000510187 RIMBP3BA6NNM3 1639 aa24.13■■□□□ 1.45
SQSTM1-213ENST00000510187 RIMBP3Q9UFD9 1639 aa24.13■■□□□ 1.45
SQSTM1-213ENST00000510187 ATP10BO94823 1461 aa24.11■■□□□ 1.45
SQSTM1-213ENST00000510187 MTUS2Q5JR59 1369 aa24.1■■□□□ 1.45
SQSTM1-213ENST00000510187 CDK11AQ9UQ88 783 aaPredicted RBP24.09■■□□□ 1.45
SQSTM1-213ENST00000510187 ADCY10Q96PN6 1610 aa24.06■■□□□ 1.44
SQSTM1-213ENST00000510187 MAGI3Q5TCQ9 1506 aa24.05■■□□□ 1.44
SQSTM1-213ENST00000510187 CYB5RLQ6IPT4 315 aa24.04■■□□□ 1.44
SQSTM1-213ENST00000510187 EHBP1L1Q8N3D4 1523 aa24.04■■□□□ 1.44
SQSTM1-213ENST00000510187 KDM5BQ9UGL1 1544 aa24.03■■□□□ 1.44
SQSTM1-213ENST00000510187 PLEKHD1A6NEE1 506 aa24.01■■□□□ 1.43
SQSTM1-213ENST00000510187 ZCCHC11Q5TAX3 1644 aaKnown RBP23.99■■□□□ 1.43
SQSTM1-213ENST00000510187 TROQ12816 1431 aaPredicted RBP23.98■■□□□ 1.43
SQSTM1-213ENST00000510187 NPM1P06748 294 aaKnown RBP eCLIP23.95■■□□□ 1.42
SQSTM1-213ENST00000510187 SUPT6HQ7KZ85 1726 aaKnown RBP23.94■■□□□ 1.42
SQSTM1-213ENST00000510187 NCOA2Q15596 1464 aa23.93■■□□□ 1.42
SQSTM1-213ENST00000510187 PHLDB1Q86UU1 1377 aa23.91■■□□□ 1.42
SQSTM1-213ENST00000510187 KIF14Q15058 1648 aa23.86■■□□□ 1.41
SQSTM1-213ENST00000510187 KCNH8Q96L42 1107 aa23.84■■□□□ 1.41
SQSTM1-213ENST00000510187 ASXL2Q76L83 1435 aa23.83■■□□□ 1.4
SQSTM1-213ENST00000510187 WDR7Q9Y4E6 1490 aa23.82■■□□□ 1.4
SQSTM1-213ENST00000510187 DNAJC5Q9H3Z4 198 aa23.82■■□□□ 1.4
SQSTM1-213ENST00000510187 MYOM3Q5VTT5 1437 aa23.81■■□□□ 1.4
SQSTM1-213ENST00000510187 CCNB3Q8WWL7 1395 aa23.81■■□□□ 1.4
SQSTM1-213ENST00000510187 RRBP1Q9P2E9 1410 aaKnown RBP23.81■■□□□ 1.4
SQSTM1-213ENST00000510187 DIEXFQ68CQ4 756 aaKnown RBP23.8■■□□□ 1.4
SQSTM1-213ENST00000510187 ABCC10Q5T3U5 1492 aa23.77■■□□□ 1.4
SQSTM1-213ENST00000510187 FGD6Q6ZV73 1430 aa23.77■■□□□ 1.4
SQSTM1-213ENST00000510187 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23.74■■□□□ 1.396e-7■■■■□ 21.5
SQSTM1-213ENST00000510187 GPATCH8Q9UKJ3 1502 aaKnown RBP23.74■■□□□ 1.39
SQSTM1-213ENST00000510187 MAPKBP1O60336 1514 aa23.73■■□□□ 1.39
SQSTM1-213ENST00000510187 ZNF316A6NFI3 1004 aaPredicted RBP23.72■■□□□ 1.39
SQSTM1-213ENST00000510187 FAM50AQ14320 339 aaKnown RBP23.72■■□□□ 1.39
SQSTM1-213ENST00000510187 MIA2Q96PC5 1412 aa23.72■■□□□ 1.39
SQSTM1-213ENST00000510187 TTC37Q6PGP7 1564 aa23.71■■□□□ 1.39
SQSTM1-213ENST00000510187 CFDP1Q9UEE9 299 aaPredicted RBP23.7■■□□□ 1.39
SQSTM1-213ENST00000510187 ITSN2Q9NZM3 1697 aa23.69■■□□□ 1.38
SQSTM1-213ENST00000510187 CLSPNQ9HAW4 1339 aa23.69■■□□□ 1.38
SQSTM1-213ENST00000510187 PTPN23Q9H3S7 1636 aa23.67■■□□□ 1.38
SQSTM1-213ENST00000510187 CDC42BPAQ5VT25 1732 aa23.67■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 629.6 ms