RNA–Protein interactions for RNA: ENST00000510187.5

SQSTM1-213, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 1,714 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-213ENST00000510187 NISCHQ9Y2I1 1504 aa36.19■■■■□ 3.38
SQSTM1-213ENST00000510187 CCDC180Q9P1Z9 1646 aa31.73■■■□□ 2.67
SQSTM1-213ENST00000510187 ABCC9O60706 1549 aa30.42■■■□□ 2.46
SQSTM1-213ENST00000510187 ZCCHC6Q5VYS8 1495 aaKnown RBP30.31■■■□□ 2.44
SQSTM1-213ENST00000510187 DCAF8L2P0C7V8 631 aa30.07■■■□□ 2.4
SQSTM1-213ENST00000510187 DCAF1Q9Y4B6 1507 aa29.92■■■□□ 2.38
SQSTM1-213ENST00000510187 MYO15BQ96JP2 1530 aa29.73■■■□□ 2.35
SQSTM1-213ENST00000510187 NACADO15069 1562 aa29.68■■■□□ 2.34
SQSTM1-213ENST00000510187 RB1CC1Q8TDY2 1594 aa29.53■■■□□ 2.32
SQSTM1-213ENST00000510187 SHROOM4Q9ULL8 1493 aa29.24■■■□□ 2.27
SQSTM1-213ENST00000510187 SCRIBQ14160 1630 aa29.14■■■□□ 2.25
SQSTM1-213ENST00000510187 UNC13AQ9UPW8 1703 aa28.85■■■□□ 2.21
SQSTM1-213ENST00000510187 BICRAQ9NZM4 1560 aa28.61■■■□□ 2.17
SQSTM1-213ENST00000510187 PABPN1Q86U42 306 aaKnown RBP eCLIP28.61■■■□□ 2.172e-7■□□□□ 9.6
SQSTM1-213ENST00000510187 CECR2Q9BXF3 1484 aa28.14■■■□□ 2.1
SQSTM1-213ENST00000510187 BAZ1AQ9NRL2 1556 aaPredicted RBP27.98■■■□□ 2.07
SQSTM1-213ENST00000510187 SUPT5HO00267 1087 aaKnown RBP27.94■■■□□ 2.06
SQSTM1-213ENST00000510187 MROH2BQ7Z745 1585 aa27.93■■■□□ 2.06
SQSTM1-213ENST00000510187 RSF1Q96T23 1441 aaPredicted RBP27.91■■■□□ 2.06
SQSTM1-213ENST00000510187 SMARCA4P51532 1647 aa27.89■■■□□ 2.06
SQSTM1-213ENST00000510187 EIF4G1Q04637 1599 aaKnown RBP27.81■■■□□ 2.04
SQSTM1-213ENST00000510187 WIZO95785 1651 aa27.67■■■□□ 2.02
SQSTM1-213ENST00000510187 PEG3Q9GZU2 1588 aa27.58■■■□□ 2.01
SQSTM1-213ENST00000510187 ATAD2BQ9ULI0 1458 aa27.56■■■□□ 2
SQSTM1-213ENST00000510187 SMARCA2P51531 1590 aa27.54■■■□□ 2
SQSTM1-213ENST00000510187 CC2D2AQ9P2K1 1620 aa27.5■■□□□ 1.99
SQSTM1-213ENST00000510187 NCAPD3P42695 1498 aa27.4■■□□□ 1.98
SQSTM1-213ENST00000510187 TOP2AP11388 1531 aaKnown RBP27.39■■□□□ 1.98
SQSTM1-213ENST00000510187 BAZ1BQ9UIG0 1483 aaKnown RBP27.39■■□□□ 1.98
SQSTM1-213ENST00000510187 HMGXB3Q12766 1538 aa27.32■■□□□ 1.96
SQSTM1-213ENST00000510187 DNAJC5BQ9UF47 199 aa27.2■■□□□ 1.94
SQSTM1-213ENST00000510187 CCDC88BA6NC98 1476 aa27.11■■□□□ 1.93
SQSTM1-213ENST00000510187 CHIC1Q5VXU3 224 aa26.8■■□□□ 1.88
SQSTM1-213ENST00000510187 CADPSQ9ULU8 1353 aa26.68■■□□□ 1.86
SQSTM1-213ENST00000510187 CFTRP13569 1480 aa26.68■■□□□ 1.86
SQSTM1-213ENST00000510187 NESP48681 1621 aa26.56■■□□□ 1.84
SQSTM1-213ENST00000510187 LAMC3Q9Y6N6 1575 aa26.53■■□□□ 1.84
SQSTM1-213ENST00000510187 PRDM2Q13029 1718 aa26.46■■□□□ 1.83
SQSTM1-213ENST00000510187 ABCC8Q09428 1581 aa26.39■■□□□ 1.82
SQSTM1-213ENST00000510187 FANCD2Q9BXW9 1451 aa26.38■■□□□ 1.81
SQSTM1-213ENST00000510187 PDS5BQ9NTI5 1447 aa26.37■■□□□ 1.81
SQSTM1-213ENST00000510187 TRIM41Q8WV44 630 aa26.31■■□□□ 1.8
SQSTM1-213ENST00000510187 WRNQ14191 1432 aaPredicted RBP eCLIP26.3■■□□□ 1.84e-10■■□□□ 11.8
SQSTM1-213ENST00000510187 CEP164Q9UPV0 1460 aa26.26■■□□□ 1.79
SQSTM1-213ENST00000510187 KIF21AQ7Z4S6 1674 aa26.21■■□□□ 1.79
SQSTM1-213ENST00000510187 SYNJ1O43426 1573 aa26.18■■□□□ 1.78
SQSTM1-213ENST00000510187 CUX1P39880 1505 aa26.15■■□□□ 1.78
SQSTM1-213ENST00000510187 ERCC6Q03468 1493 aa26.14■■□□□ 1.78
SQSTM1-213ENST00000510187 TOP2BQ02880 1626 aa26.11■■□□□ 1.77
SQSTM1-213ENST00000510187 BIVM-ERCC5R4GMW8 1640 aa26.08■■□□□ 1.77
SQSTM1-213ENST00000510187 URB2Q14146 1524 aaKnown RBP26.05■■□□□ 1.76
SQSTM1-213ENST00000510187 DNMBPQ6XZF7 1577 aa26.05■■□□□ 1.76
SQSTM1-213ENST00000510187 MRC2Q9UBG0 1479 aa26.04■■□□□ 1.76
SQSTM1-213ENST00000510187 TOPBP1Q92547 1522 aa26.03■■□□□ 1.76
SQSTM1-213ENST00000510187 FGD5Q6ZNL6 1462 aa25.94■■□□□ 1.74
SQSTM1-213ENST00000510187 WDR62O43379 1518 aa25.9■■□□□ 1.74
SQSTM1-213ENST00000510187 THOC2Q8NI27 1593 aaKnown RBP25.9■■□□□ 1.74
SQSTM1-213ENST00000510187 HRCP23327 699 aa25.88■■□□□ 1.73
SQSTM1-213ENST00000510187 POLA1P09884 1462 aaPredicted RBP25.88■■□□□ 1.73
SQSTM1-213ENST00000510187 SOGA1O94964 1423 aa25.82■■□□□ 1.72
SQSTM1-213ENST00000510187 FAM9AQ8IZU1 332 aaPredicted RBP25.8■■□□□ 1.72
SQSTM1-213ENST00000510187 RAD54L2Q9Y4B4 1467 aa25.79■■□□□ 1.72
SQSTM1-213ENST00000510187 LOC105371045A0A1W2PR82 267 aa25.79■■□□□ 1.72
SQSTM1-213ENST00000510187 RUSC2Q8N2Y8 1516 aa25.74■■□□□ 1.71
SQSTM1-213ENST00000510187 CUX2O14529 1486 aa25.72■■□□□ 1.71
SQSTM1-213ENST00000510187 PCGF6Q9BYE7 350 aa25.72■■□□□ 1.71
SQSTM1-213ENST00000510187 ABCA10Q8WWZ4 1543 aa25.7■■□□□ 1.7
SQSTM1-213ENST00000510187 EEA1Q15075 1411 aa25.7■■□□□ 1.7
SQSTM1-213ENST00000510187 KIF27Q86VH2 1401 aa25.69■■□□□ 1.7
SQSTM1-213ENST00000510187 TARBP1Q13395 1621 aaKnown RBP25.66■■□□□ 1.7
SQSTM1-213ENST00000510187 IFT140Q96RY7 1462 aa25.66■■□□□ 1.7
SQSTM1-213ENST00000510187 WDR97A6NE52 1622 aa25.62■■□□□ 1.69
SQSTM1-213ENST00000510187 CSRNP3Q8WYN3 585 aa25.61■■□□□ 1.69
SQSTM1-213ENST00000510187 TDRD9Q8NDG6 1382 aaKnown RBP25.59■■□□□ 1.69
SQSTM1-213ENST00000510187 ZNF608Q9ULD9 1512 aaPredicted RBP25.52■■□□□ 1.68
SQSTM1-213ENST00000510187 GAPVD1Q14C86 1478 aa25.51■■□□□ 1.67
SQSTM1-213ENST00000510187 ABCA5Q8WWZ7 1642 aa25.51■■□□□ 1.67
SQSTM1-213ENST00000510187 AQRO60306 1485 aaKnown RBP eCLIP25.49■■□□□ 1.673e-8■■■■■ 26.9
SQSTM1-213ENST00000510187 IGF1RP08069 1367 aa25.49■■□□□ 1.67
SQSTM1-213ENST00000510187 TRIM26Q12899 539 aaPredicted RBP25.49■■□□□ 1.67
SQSTM1-213ENST00000510187 EHMT2Q96KQ7 1210 aa25.46■■□□□ 1.67
SQSTM1-213ENST00000510187 EIF4G3O43432 1585 aaKnown RBP25.41■■□□□ 1.66
SQSTM1-213ENST00000510187 ERICH3Q5RHP9 1530 aa25.4■■□□□ 1.66
SQSTM1-213ENST00000510187 PRXQ9BXM0 1461 aa25.38■■□□□ 1.65
SQSTM1-213ENST00000510187 GRIN2BQ13224 1484 aa25.38■■□□□ 1.65
SQSTM1-213ENST00000510187 KIF21BO75037 1637 aa25.37■■□□□ 1.65
SQSTM1-213ENST00000510187 CARMIL1Q5VZK9 1371 aa25.36■■□□□ 1.65
SQSTM1-213ENST00000510187 PBRM1Q86U86 1689 aa25.35■■□□□ 1.65
SQSTM1-213ENST00000510187 GOLGA3Q08378 1498 aa25.33■■□□□ 1.64
SQSTM1-213ENST00000510187 RAPGEF2Q9Y4G8 1499 aa25.32■■□□□ 1.64
SQSTM1-213ENST00000510187 CUL7Q14999 1698 aa25.31■■□□□ 1.64
SQSTM1-213ENST00000510187 UBTFP17480 764 aaKnown RBP25.26■■□□□ 1.63
SQSTM1-213ENST00000510187 SNAPC4Q5SXM2 1469 aa25.26■■□□□ 1.63
SQSTM1-213ENST00000510187 FHAD1B1AJZ9 1412 aa25.23■■□□□ 1.63
SQSTM1-213ENST00000510187 ADAMTS12P58397 1594 aa25.21■■□□□ 1.63
SQSTM1-213ENST00000510187 MAGI1Q96QZ7 1491 aaPredicted RBP25.21■■□□□ 1.63
SQSTM1-213ENST00000510187 TNIKQ9UKE5 1360 aa25.16■■□□□ 1.62
SQSTM1-213ENST00000510187 SYNJ2O15056 1496 aa25.12■■□□□ 1.61
SQSTM1-213ENST00000510187 CHMP7Q8WUX9 453 aaPredicted RBP25.11■■□□□ 1.61
SQSTM1-213ENST00000510187 FBLN2P98095 1184 aa25.09■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms