RNA–Protein interactions for RNA: ENST00000503492.5

PCDH1-204, Transcript of protocadherin 1, human

TSL 5 BASIC

Gene PCDH1, Length 2,373 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PCDH1-204	ENST00000503492	TIAM1	Q13009	1591 aa		33.89	■■■■□ 3.02
PCDH1-204	ENST00000503492	P3H3	Q8IVL6	736 aa		33.89	■■■■□ 3.02
PCDH1-204	ENST00000503492	FHAD1	B1AJZ9	1412 aa		33.88	■■■■□ 3.01
PCDH1-204	ENST00000503492	EFCAB5	A4FU69	1503 aa		33.88	■■■■□ 3.01
PCDH1-204	ENST00000503492	RRBP1	Q9P2E9	1410 aa	Known RBP	33.86	■■■■□ 3.01
PCDH1-204	ENST00000503492	FHOD3	Q2V2M9	1422 aa		33.84	■■■■□ 3.01
PCDH1-204	ENST00000503492	PCF11	O94913	1555 aa	Known RBP	33.82	■■■■□ 3
PCDH1-204	ENST00000503492	PBRM1	Q86U86	1689 aa		33.75	■■■□□ 2.99
PCDH1-204	ENST00000503492	LRRC9	Q6ZRR7	1453 aa		33.75	■■■□□ 2.99
PCDH1-204	ENST00000503492	CFAP43	Q8NDM7	1665 aa		33.73	■■■□□ 2.99
PCDH1-204	ENST00000503492	AQR	O60306	1485 aa	Known RBP eCLIP	33.71	■■■□□ 2.99
PCDH1-204	ENST00000503492	CCNB3	Q8WWL7	1395 aa		33.71	■■■□□ 2.99
PCDH1-204	ENST00000503492	WDR62	O43379	1518 aa		33.7	■■■□□ 2.99
PCDH1-204	ENST00000503492	FYCO1	Q9BQS8	1478 aa		33.69	■■■□□ 2.98
PCDH1-204	ENST00000503492	CASKIN1	Q8WXD9	1431 aa		33.68	■■■□□ 2.98
PCDH1-204	ENST00000503492	SAMD9	Q5K651	1589 aa		33.67	■■■□□ 2.98
PCDH1-204	ENST00000503492	ATP1B4	Q9UN42	357 aa	Predicted RBP	33.63	■■■□□ 2.97
PCDH1-204	ENST00000503492	FMN1	Q68DA7	1419 aa		33.62	■■■□□ 2.97
PCDH1-204	ENST00000503492	IFT140	Q96RY7	1462 aa		33.62	■■■□□ 2.97
PCDH1-204	ENST00000503492	ADAMTS12	P58397	1594 aa		33.61	■■■□□ 2.97
PCDH1-204	ENST00000503492	GRIN2B	Q13224	1484 aa		33.59	■■■□□ 2.97
PCDH1-204	ENST00000503492	SNAPC4	Q5SXM2	1469 aa		33.57	■■■□□ 2.96
PCDH1-204	ENST00000503492	ZNF608	Q9ULD9	1512 aa	Predicted RBP	33.57	■■■□□ 2.96
PCDH1-204	ENST00000503492	PHLDB1	Q86UU1	1377 aa		33.56	■■■□□ 2.96
PCDH1-204	ENST00000503492	ERCC6	Q03468	1493 aa		33.51	■■■□□ 2.96
PCDH1-204	ENST00000503492	DHX57	Q6P158	1386 aa	Known RBP	33.47	■■■□□ 2.95
PCDH1-204	ENST00000503492	ITGAE	P38570	1179 aa		33.45	■■■□□ 2.94
PCDH1-204	ENST00000503492	IQGAP2	Q13576	1575 aa		33.43	■■■□□ 2.94
PCDH1-204	ENST00000503492	THOC2	Q8NI27	1593 aa	Known RBP	33.43	■■■□□ 2.94
PCDH1-204	ENST00000503492	LRRIQ1	Q96JM4	1722 aa		33.41	■■■□□ 2.94
PCDH1-204	ENST00000503492	CLSPN	Q9HAW4	1339 aa		33.38	■■■□□ 2.93
PCDH1-204	ENST00000503492	EIF4G3	O43432	1585 aa	Known RBP	33.38	■■■□□ 2.93
PCDH1-204	ENST00000503492	FAM50A	Q14320	339 aa	Known RBP	33.31	■■■□□ 2.92
PCDH1-204	ENST00000503492	MTUS2	Q5JR59	1369 aa		33.29	■■■□□ 2.92
PCDH1-204	ENST00000503492	UGGT2	Q9NYU1	1516 aa		33.26	■■■□□ 2.92
PCDH1-204	ENST00000503492	RAB3GAP2	Q9H2M9	1393 aa		33.25	■■■□□ 2.91
PCDH1-204	ENST00000503492	ZNF316	A6NFI3	1004 aa	Predicted RBP	33.25	■■■□□ 2.91
PCDH1-204	ENST00000503492	GRIN2A	Q12879	1464 aa		33.23	■■■□□ 2.91
PCDH1-204	ENST00000503492	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	33.22	■■■□□ 2.91
PCDH1-204	ENST00000503492	KIAA0586	Q9BVV6	1533 aa		33.22	■■■□□ 2.91
PCDH1-204	ENST00000503492	DIEXF	Q68CQ4	756 aa	Known RBP	33.21	■■■□□ 2.91
PCDH1-204	ENST00000503492	SETD5	Q9C0A6	1442 aa		33.2	■■■□□ 2.91
PCDH1-204	ENST00000503492	FGD6	Q6ZV73	1430 aa		33.19	■■■□□ 2.9
PCDH1-204	ENST00000503492	HECW1	Q76N89	1606 aa		33.17	■■■□□ 2.9
PCDH1-204	ENST00000503492	CCDC18	Q5T9S5	1454 aa		33.17	■■■□□ 2.9
PCDH1-204	ENST00000503492	EHBP1L1	Q8N3D4	1523 aa		33.17	■■■□□ 2.9
PCDH1-204	ENST00000503492	MAGI1	Q96QZ7	1491 aa	Predicted RBP	33.17	■■■□□ 2.9
PCDH1-204	ENST00000503492	NCOA2	Q15596	1464 aa		33.16	■■■□□ 2.9
PCDH1-204	ENST00000503492	MAGI3	Q5TCQ9	1506 aa		33.13	■■■□□ 2.89
PCDH1-204	ENST00000503492	SUPT6H	Q7KZ85	1726 aa	Known RBP	33.13	■■■□□ 2.89
PCDH1-204	ENST00000503492	DISP1	Q96F81	1524 aa		33.11	■■■□□ 2.89
PCDH1-204	ENST00000503492	KIAA0556	O60303	1618 aa		33.09	■■■□□ 2.89
PCDH1-204	ENST00000503492	EPRS	P07814	1512 aa	Known RBP	33.09	■■■□□ 2.89
PCDH1-204	ENST00000503492	SYNJ2	O15056	1496 aa		33.08	■■■□□ 2.89
PCDH1-204	ENST00000503492	MYOM3	Q5VTT5	1437 aa		33.08	■■■□□ 2.89
PCDH1-204	ENST00000503492	ARHGEF11	O15085	1522 aa		33.06	■■■□□ 2.88
PCDH1-204	ENST00000503492	CHMP7	Q8WUX9	453 aa	Predicted RBP	33.04	■■■□□ 2.88
PCDH1-204	ENST00000503492	MAPKBP1	O60336	1514 aa		33.03	■■■□□ 2.88
PCDH1-204	ENST00000503492	CEP170	Q5SW79	1584 aa		33.03	■■■□□ 2.88
PCDH1-204	ENST00000503492	CDK13	Q14004	1512 aa	Known RBP	33.02	■■■□□ 2.88
PCDH1-204	ENST00000503492	PTPRK	Q15262	1439 aa		32.95	■■■□□ 2.87
PCDH1-204	ENST00000503492	FBLN2	P98095	1184 aa		32.94	■■■□□ 2.86
PCDH1-204	ENST00000503492	PTPN23	Q9H3S7	1636 aa		32.93	■■■□□ 2.86
PCDH1-204	ENST00000503492	ARID3C	A6NKF2	412 aa		32.91	■■■□□ 2.86
PCDH1-204	ENST00000503492	NUP160	Q12769	1436 aa		32.91	■■■□□ 2.86
PCDH1-204	ENST00000503492	RAPGEF6	Q8TEU7	1601 aa		32.88	■■■□□ 2.85
PCDH1-204	ENST00000503492	NUP153	P49790	1475 aa	Known RBP	32.87	■■■□□ 2.85
PCDH1-204	ENST00000503492	TCOF1	Q13428	1488 aa	Known RBP	32.85	■■■□□ 2.85
PCDH1-204	ENST00000503492	HFM1	A2PYH4	1435 aa		32.84	■■■□□ 2.85
PCDH1-204	ENST00000503492	JPH4	Q96JJ6	628 aa		32.78	■■■□□ 2.84
PCDH1-204	ENST00000503492	NAIP	Q13075	1403 aa		32.76	■■■□□ 2.84
PCDH1-204	ENST00000503492	MIA2	Q96PC5	1412 aa		32.76	■■■□□ 2.84
PCDH1-204	ENST00000503492	CARMIL2	Q6F5E8	1435 aa		32.74	■■■□□ 2.83
PCDH1-204	ENST00000503492	SIN3A	Q96ST3	1273 aa		32.72	■■■□□ 2.83
PCDH1-204	ENST00000503492	PLB1	Q6P1J6	1458 aa		32.72	■■■□□ 2.83
PCDH1-204	ENST00000503492	UACA	Q9BZF9	1416 aa		32.66	■■■□□ 2.82
PCDH1-204	ENST00000503492	CDK11A	Q9UQ88	783 aa	Predicted RBP	32.66	■■■□□ 2.82
PCDH1-204	ENST00000503492	NEUROD1	Q13562	356 aa		32.65	■■■□□ 2.82
PCDH1-204	ENST00000503492	CHIC2	Q9UKJ5	165 aa		32.61	■■■□□ 2.81
PCDH1-204	ENST00000503492	PRG4	Q92954	1404 aa	Predicted RBP	32.6	■■■□□ 2.81
PCDH1-204	ENST00000503492	MIER1	Q8N108	512 aa		32.6	■■■□□ 2.81
PCDH1-204	ENST00000503492	TRO	Q12816	1431 aa	Predicted RBP	32.6	■■■□□ 2.81
PCDH1-204	ENST00000503492	GCC2	Q8IWJ2	1684 aa		32.59	■■■□□ 2.81
PCDH1-204	ENST00000503492	RRP7BP	Q9NSQ0	103 aa		32.59	■■■□□ 2.81
PCDH1-204	ENST00000503492	AKNA	Q7Z591	1439 aa		32.58	■■■□□ 2.81
PCDH1-204	ENST00000503492	TIMELESS	Q9UNS1	1208 aa		32.56	■■■□□ 2.8
PCDH1-204	ENST00000503492	ABCA8	O94911	1581 aa		32.55	■■■□□ 2.8
PCDH1-204	ENST00000503492	CHD1	O14646	1710 aa		32.51	■■■□□ 2.79
PCDH1-204	ENST00000503492	DAPK1	P53355	1430 aa		32.49	■■■□□ 2.79
PCDH1-204	ENST00000503492	ADCY10	Q96PN6	1610 aa		32.49	■■■□□ 2.79
PCDH1-204	ENST00000503492	ZNF644	Q9H582	1327 aa	Predicted RBP	32.49	■■■□□ 2.79
PCDH1-204	ENST00000503492	KDM6B	O15054	1643 aa		32.48	■■■□□ 2.79
PCDH1-204	ENST00000503492	DNMT1	P26358	1616 aa	Known RBP	32.48	■■■□□ 2.79
PCDH1-204	ENST00000503492	KIF14	Q15058	1648 aa		32.48	■■■□□ 2.79
PCDH1-204	ENST00000503492	ABCC5	O15440	1437 aa		32.46	■■■□□ 2.79
PCDH1-204	ENST00000503492	ITSN2	Q9NZM3	1697 aa		32.43	■■■□□ 2.78
PCDH1-204	ENST00000503492	GPATCH8	Q9UKJ3	1502 aa	Known RBP	32.42	■■■□□ 2.78
PCDH1-204	ENST00000503492	ATP10B	O94823	1461 aa		32.42	■■■□□ 2.78
PCDH1-204	ENST00000503492	PPP1R15A	O75807	674 aa	Predicted RBP	32.41	■■■□□ 2.78
PCDH1-204	ENST00000503492	ROCK1	Q13464	1354 aa		32.41	■■■□□ 2.78

Retrieved 100 of 20,778 RNA–protein pairs in 8.8 ms