RNA–Protein interactions for RNA: ENST00000503418.5

UBE2D3-215, Transcript of ubiquitin conjugating enzyme E2 D3, human

TSL 4

Gene UBE2D3, Length 662 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBE2D3-215	ENST00000503418	PRG4	Q92954	1404 aa	Predicted RBP	33.6	■■■□□ 2.97
UBE2D3-215	ENST00000503418	JPH4	Q96JJ6	628 aa		33.59	■■■□□ 2.97
UBE2D3-215	ENST00000503418	CARMIL1	Q5VZK9	1371 aa		33.47	■■■□□ 2.95
UBE2D3-215	ENST00000503418	KIAA0586	Q9BVV6	1533 aa		33.46	■■■□□ 2.95
UBE2D3-215	ENST00000503418	IQGAP2	Q13576	1575 aa		33.22	■■■□□ 2.91
UBE2D3-215	ENST00000503418	RAPGEF2	Q9Y4G8	1499 aa		33.21	■■■□□ 2.91
UBE2D3-215	ENST00000503418	ADCY10	Q96PN6	1610 aa		33.19	■■■□□ 2.9
UBE2D3-215	ENST00000503418	NPM1	P06748	294 aa	Known RBP eCLIP	33.16	■■■□□ 2.9
UBE2D3-215	ENST00000503418	CARMIL2	Q6F5E8	1435 aa		33.15	■■■□□ 2.9
UBE2D3-215	ENST00000503418	TTBK1	Q5TCY1	1321 aa	Predicted RBP	33.13	■■■□□ 2.89
UBE2D3-215	ENST00000503418	KIF13A	Q9H1H9	1805 aa		33.13	■■■□□ 2.89
UBE2D3-215	ENST00000503418	PTPRG	P23470	1445 aa		33.11	■■■□□ 2.89
UBE2D3-215	ENST00000503418	TNIK	Q9UKE5	1360 aa		33.08	■■■□□ 2.89
UBE2D3-215	ENST00000503418	MAPKBP1	O60336	1514 aa		33.06	■■■□□ 2.88
UBE2D3-215	ENST00000503418	DISP1	Q96F81	1524 aa		33.01	■■■□□ 2.87
UBE2D3-215	ENST00000503418	UGGT2	Q9NYU1	1516 aa		32.99	■■■□□ 2.87
UBE2D3-215	ENST00000503418	ABCC10	Q5T3U5	1492 aa		32.99	■■■□□ 2.87
UBE2D3-215	ENST00000503418	CTTNBP2	Q8WZ74	1663 aa		32.98	■■■□□ 2.87
UBE2D3-215	ENST00000503418	FAM69C	Q0P6D2	419 aa		32.97	■■■□□ 2.87
UBE2D3-215	ENST00000503418	DIP2B	Q9P265	1576 aa		32.95	■■■□□ 2.86
UBE2D3-215	ENST00000503418	KIAA0556	O60303	1618 aa		32.92	■■■□□ 2.86
UBE2D3-215	ENST00000503418	PRX	Q9BXM0	1461 aa		32.91	■■■□□ 2.86
UBE2D3-215	ENST00000503418	ABCC2	Q92887	1545 aa		32.89	■■■□□ 2.86
UBE2D3-215	ENST00000503418	UACA	Q9BZF9	1416 aa		32.86	■■■□□ 2.85
UBE2D3-215	ENST00000503418	UHRF1BP1L	A0JNW5	1464 aa		32.85	■■■□□ 2.85
UBE2D3-215	ENST00000503418	TSPOAP1	O95153	1857 aa		32.78	■■■□□ 2.84
UBE2D3-215	ENST00000503418	GOLGA3	Q08378	1498 aa		32.76	■■■□□ 2.84
UBE2D3-215	ENST00000503418	ASXL2	Q76L83	1435 aa		32.76	■■■□□ 2.83
UBE2D3-215	ENST00000503418	CSRNP3	Q8WYN3	585 aa		32.74	■■■□□ 2.83
UBE2D3-215	ENST00000503418	PLB1	Q6P1J6	1458 aa		32.73	■■■□□ 2.83
UBE2D3-215	ENST00000503418	KDM5B	Q9UGL1	1544 aa		32.7	■■■□□ 2.83
UBE2D3-215	ENST00000503418	ZCCHC11	Q5TAX3	1644 aa	Known RBP	32.69	■■■□□ 2.82
UBE2D3-215	ENST00000503418	EEA1	Q15075	1411 aa		32.67	■■■□□ 2.82
UBE2D3-215	ENST00000503418	KDM6B	O15054	1643 aa		32.61	■■■□□ 2.81
UBE2D3-215	ENST00000503418	GLI2	P10070	1586 aa		32.61	■■■□□ 2.81
UBE2D3-215	ENST00000503418	FAM9A	Q8IZU1	332 aa	Predicted RBP	32.59	■■■□□ 2.81
UBE2D3-215	ENST00000503418	AEBP2	Q6ZN18	517 aa	Predicted RBP	32.57	■■■□□ 2.8
UBE2D3-215	ENST00000503418	ABCA8	O94911	1581 aa		32.57	■■■□□ 2.8
UBE2D3-215	ENST00000503418	EPRS	P07814	1512 aa	Known RBP	32.56	■■■□□ 2.8
UBE2D3-215	ENST00000503418	P3H3	Q8IVL6	736 aa		32.55	■■■□□ 2.8
UBE2D3-215	ENST00000503418	PPRC1	Q5VV67	1664 aa	Known RBP	32.53	■■■□□ 2.8
UBE2D3-215	ENST00000503418	WDR7	Q9Y4E6	1490 aa		32.49	■■■□□ 2.79
UBE2D3-215	ENST00000503418	SAMD9	Q5K651	1589 aa		32.48	■■■□□ 2.79
UBE2D3-215	ENST00000503418	MAP3K4	Q9Y6R4	1608 aa		32.48	■■■□□ 2.79
UBE2D3-215	ENST00000503418	RANGAP1	P46060	587 aa	Predicted RBP	32.43	■■■□□ 2.78
UBE2D3-215	ENST00000503418	KIF21B	O75037	1637 aa		32.41	■■■□□ 2.78
UBE2D3-215	ENST00000503418	CHIC1	Q5VXU3	224 aa		32.41	■■■□□ 2.78
UBE2D3-215	ENST00000503418	ARID3C	A6NKF2	412 aa		32.38	■■■□□ 2.77
UBE2D3-215	ENST00000503418	TEX14	Q8IWB6	1497 aa		32.36	■■■□□ 2.77
UBE2D3-215	ENST00000503418	KCNH8	Q96L42	1107 aa		32.35	■■■□□ 2.77
UBE2D3-215	ENST00000503418	RAPGEF6	Q8TEU7	1601 aa		32.32	■■■□□ 2.76
UBE2D3-215	ENST00000503418	CFAP43	Q8NDM7	1665 aa		32.3	■■■□□ 2.76
UBE2D3-215	ENST00000503418	ATP10B	O94823	1461 aa		32.29	■■■□□ 2.76
UBE2D3-215	ENST00000503418	FHOD3	Q2V2M9	1422 aa		32.29	■■■□□ 2.76
UBE2D3-215	ENST00000503418	EHMT2	Q96KQ7	1210 aa		32.28	■■■□□ 2.76
UBE2D3-215	ENST00000503418	CD109	Q6YHK3	1445 aa		32.26	■■■□□ 2.75
UBE2D3-215	ENST00000503418	COL17A1	Q9UMD9	1497 aa	Predicted RBP	32.24	■■■□□ 2.75
UBE2D3-215	ENST00000503418	EFCAB5	A4FU69	1503 aa		32.21	■■■□□ 2.75
UBE2D3-215	ENST00000503418	MAGI3	Q5TCQ9	1506 aa		32.2	■■■□□ 2.74
UBE2D3-215	ENST00000503418	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	32.19	■■■□□ 2.74
UBE2D3-215	ENST00000503418	UBTF	P17480	764 aa	Known RBP	32.19	■■■□□ 2.74
UBE2D3-215	ENST00000503418	HNRNPUL2	Q1KMD3	747 aa	Known RBP	32.19	■■■□□ 2.74
UBE2D3-215	ENST00000503418	NUP153	P49790	1475 aa	Known RBP	32.16	■■■□□ 2.74
UBE2D3-215	ENST00000503418	KDM4F	A0A1W2PPD8	638 aa		32.1	■■■□□ 2.73
UBE2D3-215	ENST00000503418	ABCA9	Q8IUA7	1624 aa		32.08	■■■□□ 2.73
UBE2D3-215	ENST00000503418	PLEKHD1	A6NEE1	506 aa		31.97	■■■□□ 2.71
UBE2D3-215	ENST00000503418	ARHGAP35	Q9NRY4	1499 aa		31.97	■■■□□ 2.71
UBE2D3-215	ENST00000503418	ADGRL1	O94910	1474 aa		31.96	■■■□□ 2.71
UBE2D3-215	ENST00000503418	ARAP3	Q8WWN8	1544 aa		31.94	■■■□□ 2.7
UBE2D3-215	ENST00000503418	FMN1	Q68DA7	1419 aa		31.92	■■■□□ 2.7
UBE2D3-215	ENST00000503418	CDK13	Q14004	1512 aa	Known RBP	31.92	■■■□□ 2.7
UBE2D3-215	ENST00000503418	ATP1B4	Q9UN42	357 aa	Predicted RBP	31.9	■■■□□ 2.7
UBE2D3-215	ENST00000503418	PHLDB1	Q86UU1	1377 aa		31.88	■■■□□ 2.69
UBE2D3-215	ENST00000503418	HECW1	Q76N89	1606 aa		31.88	■■■□□ 2.69
UBE2D3-215	ENST00000503418	NEO1	Q92859	1461 aa		31.87	■■■□□ 2.69
UBE2D3-215	ENST00000503418	GEMIN5	Q8TEQ6	1508 aa	Known RBP eCLIP	31.83	■■■□□ 2.69	6e-33	■□□□□ 10.7
UBE2D3-215	ENST00000503418	TTC37	Q6PGP7	1564 aa		31.81	■■■□□ 2.68
UBE2D3-215	ENST00000503418	RAPGEF3	O95398	923 aa		31.79	■■■□□ 2.68
UBE2D3-215	ENST00000503418	CFAP74	Q9C0B2	1584 aa		31.75	■■■□□ 2.67
UBE2D3-215	ENST00000503418	FANCA	O15360	1455 aa		31.73	■■■□□ 2.67
UBE2D3-215	ENST00000503418	FRMPD1	Q5SYB0	1578 aa		31.73	■■■□□ 2.67
UBE2D3-215	ENST00000503418	AKNA	Q7Z591	1439 aa		31.7	■■■□□ 2.67
UBE2D3-215	ENST00000503418	CDK11A	Q9UQ88	783 aa	Predicted RBP	31.7	■■■□□ 2.67
UBE2D3-215	ENST00000503418	LRRIQ1	Q96JM4	1722 aa		31.69	■■■□□ 2.66
UBE2D3-215	ENST00000503418	DENND4B	O75064	1496 aa	Predicted RBP	31.66	■■■□□ 2.66
UBE2D3-215	ENST00000503418	PCF11	O94913	1555 aa	Known RBP	31.65	■■■□□ 2.66
UBE2D3-215	ENST00000503418	RICTOR	Q6R327	1708 aa		31.65	■■■□□ 2.66
UBE2D3-215	ENST00000503418	KIF14	Q15058	1648 aa		31.63	■■■□□ 2.65
UBE2D3-215	ENST00000503418	MYO5C	Q9NQX4	1742 aa		31.61	■■■□□ 2.65
UBE2D3-215	ENST00000503418	PLCH2	O75038	1416 aa		31.61	■■■□□ 2.65
UBE2D3-215	ENST00000503418	TRO	Q12816	1431 aa	Predicted RBP	31.6	■■■□□ 2.65
UBE2D3-215	ENST00000503418	CASKIN1	Q8WXD9	1431 aa		31.59	■■■□□ 2.65
UBE2D3-215	ENST00000503418	CLIP1	P30622	1438 aa		31.58	■■■□□ 2.65
UBE2D3-215	ENST00000503418	CCDC18	Q5T9S5	1454 aa		31.56	■■■□□ 2.64
UBE2D3-215	ENST00000503418	ARHGEF40	Q8TER5	1519 aa		31.55	■■■□□ 2.64
UBE2D3-215	ENST00000503418	ARID4B	Q4LE39	1312 aa	Predicted RBP	31.51	■■■□□ 2.64
UBE2D3-215	ENST00000503418	SCAPER	Q9BY12	1400 aa		31.51	■■■□□ 2.64
UBE2D3-215	ENST00000503418	ZMYM4	Q5VZL5	1548 aa		31.5	■■■□□ 2.63
UBE2D3-215	ENST00000503418	FYCO1	Q9BQS8	1478 aa		31.5	■■■□□ 2.63
UBE2D3-215	ENST00000503418	EFCAB2	Q5VUJ9	269 aa		31.49	■■■□□ 2.63

Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms