RNA–Protein interactions for RNA: ENST00000503418.5

UBE2D3-215, Transcript of ubiquitin conjugating enzyme E2 D3, humanhuman

TSL 4

Gene UBE2D3, Length 662 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D3-215ENST00000503418 NISCHQ9Y2I1 1504 aa48.17■■■■■ 5.3
UBE2D3-215ENST00000503418 CCDC180Q9P1Z9 1646 aa43.1■■■■■ 4.49
UBE2D3-215ENST00000503418 ABCC9O60706 1549 aa42.79■■■■■ 4.44
UBE2D3-215ENST00000503418 RB1CC1Q8TDY2 1594 aa40.86■■■■■ 4.13
UBE2D3-215ENST00000503418 NACADO15069 1562 aa40.64■■■■■ 4.1
UBE2D3-215ENST00000503418 DCAF8L2P0C7V8 631 aa40.58■■■■■ 4.09
UBE2D3-215ENST00000503418 MYO15BQ96JP2 1530 aa40.15■■■■■ 4.02
UBE2D3-215ENST00000503418 ZCCHC6Q5VYS8 1495 aaKnown RBP40■■■■□ 3.99
UBE2D3-215ENST00000503418 UNC13AQ9UPW8 1703 aa39.99■■■■□ 3.99
UBE2D3-215ENST00000503418 PABPN1Q86U42 306 aaKnown RBP eCLIP39.88■■■■□ 3.97
UBE2D3-215ENST00000503418 DCAF1Q9Y4B6 1507 aa39.77■■■■□ 3.96
UBE2D3-215ENST00000503418 DNAJC5BQ9UF47 199 aa39.76■■■■□ 3.96
UBE2D3-215ENST00000503418 BICRAQ9NZM4 1560 aa39.63■■■■□ 3.94
UBE2D3-215ENST00000503418 SCRIBQ14160 1630 aa39.34■■■■□ 3.89
UBE2D3-215ENST00000503418 SHROOM4Q9ULL8 1493 aa39.11■■■■□ 3.85
UBE2D3-215ENST00000503418 CC2D2AQ9P2K1 1620 aa38.67■■■■□ 3.78
UBE2D3-215ENST00000503418 EIF4G1Q04637 1599 aaKnown RBP38.65■■■■□ 3.78
UBE2D3-215ENST00000503418 CECR2Q9BXF3 1484 aa38.48■■■■□ 3.75
UBE2D3-215ENST00000503418 SMARCA4P51532 1647 aa37.53■■■■□ 3.6
UBE2D3-215ENST00000503418 NCAPD3P42695 1498 aa37.48■■■■□ 3.59
UBE2D3-215ENST00000503418 ATAD2BQ9ULI0 1458 aa37.45■■■■□ 3.59
UBE2D3-215ENST00000503418 BAZ1AQ9NRL2 1556 aaPredicted RBP37.38■■■■□ 3.58
UBE2D3-215ENST00000503418 SMARCA2P51531 1590 aa37.38■■■■□ 3.57
UBE2D3-215ENST00000503418 HMGXB3Q12766 1538 aa37.27■■■■□ 3.56
UBE2D3-215ENST00000503418 BAZ1BQ9UIG0 1483 aaKnown RBP37.13■■■■□ 3.54
UBE2D3-215ENST00000503418 MROH2BQ7Z745 1585 aa37.13■■■■□ 3.53
UBE2D3-215ENST00000503418 PEG3Q9GZU2 1588 aa37.11■■■■□ 3.53
UBE2D3-215ENST00000503418 ERCC6Q03468 1493 aa36.94■■■■□ 3.5
UBE2D3-215ENST00000503418 NESP48681 1621 aa36.85■■■■□ 3.49
UBE2D3-215ENST00000503418 WIZO95785 1651 aa36.74■■■■□ 3.47
UBE2D3-215ENST00000503418 CUX2O14529 1486 aa36.7■■■■□ 3.47
UBE2D3-215ENST00000503418 LAMC3Q9Y6N6 1575 aa36.63■■■■□ 3.45
UBE2D3-215ENST00000503418 RSF1Q96T23 1441 aaPredicted RBP36.47■■■■□ 3.43
UBE2D3-215ENST00000503418 KIF21AQ7Z4S6 1674 aa36.42■■■■□ 3.42
UBE2D3-215ENST00000503418 PDS5BQ9NTI5 1447 aa36.41■■■■□ 3.42
UBE2D3-215ENST00000503418 THOC2Q8NI27 1593 aaKnown RBP36.4■■■■□ 3.42
UBE2D3-215ENST00000503418 CADPSQ9ULU8 1353 aa36.39■■■■□ 3.42
UBE2D3-215ENST00000503418 TOP2AP11388 1531 aaKnown RBP36.27■■■■□ 3.4
UBE2D3-215ENST00000503418 DNAJC5Q9H3Z4 198 aa36.25■■■■□ 3.39
UBE2D3-215ENST00000503418 MRC2Q9UBG0 1479 aa36.08■■■■□ 3.37
UBE2D3-215ENST00000503418 CFTRP13569 1480 aa36.04■■■■□ 3.36
UBE2D3-215ENST00000503418 CEP164Q9UPV0 1460 aa36.02■■■■□ 3.36
UBE2D3-215ENST00000503418 FANCD2Q9BXW9 1451 aa36■■■■□ 3.35
UBE2D3-215ENST00000503418 WDR62O43379 1518 aa35.97■■■■□ 3.35
UBE2D3-215ENST00000503418 CCDC88BA6NC98 1476 aa35.85■■■■□ 3.33
UBE2D3-215ENST00000503418 PRDM2Q13029 1718 aa35.79■■■■□ 3.32
UBE2D3-215ENST00000503418 URB2Q14146 1524 aaKnown RBP35.67■■■■□ 3.3
UBE2D3-215ENST00000503418 TOPBP1Q92547 1522 aa35.35■■■■□ 3.25
UBE2D3-215ENST00000503418 ABCC8Q09428 1581 aa35.28■■■■□ 3.24
UBE2D3-215ENST00000503418 DNMBPQ6XZF7 1577 aa35.26■■■■□ 3.24
UBE2D3-215ENST00000503418 IFT140Q96RY7 1462 aa35.26■■■■□ 3.23
UBE2D3-215ENST00000503418 ZNF608Q9ULD9 1512 aaPredicted RBP35.18■■■■□ 3.22
UBE2D3-215ENST00000503418 SUPT5HO00267 1087 aaKnown RBP35.17■■■■□ 3.22
UBE2D3-215ENST00000503418 OSCARQ8IYS5 282 aa35.08■■■■□ 3.21
UBE2D3-215ENST00000503418 EIF4G3O43432 1585 aaKnown RBP35.04■■■■□ 3.2
UBE2D3-215ENST00000503418 TARBP1Q13395 1621 aaKnown RBP35.01■■■■□ 3.19
UBE2D3-215ENST00000503418 POLA1P09884 1462 aaPredicted RBP35.01■■■■□ 3.19
UBE2D3-215ENST00000503418 AQRO60306 1485 aaKnown RBP eCLIP34.91■■■■□ 3.184e-14■■■■□ 25.4
UBE2D3-215ENST00000503418 TRIM41Q8WV44 630 aa34.91■■■■□ 3.18
UBE2D3-215ENST00000503418 RAD54L2Q9Y4B4 1467 aa34.89■■■■□ 3.18
UBE2D3-215ENST00000503418 CUX1P39880 1505 aa34.87■■■■□ 3.17
UBE2D3-215ENST00000503418 SOGA1O94964 1423 aa34.86■■■■□ 3.17
UBE2D3-215ENST00000503418 FGD5Q6ZNL6 1462 aa34.85■■■■□ 3.17
UBE2D3-215ENST00000503418 TDRD9Q8NDG6 1382 aaKnown RBP34.74■■■■□ 3.15
UBE2D3-215ENST00000503418 CHD1O14646 1710 aa34.74■■■■□ 3.15
UBE2D3-215ENST00000503418 WDR97A6NE52 1622 aa34.67■■■■□ 3.14
UBE2D3-215ENST00000503418 FBLN2P98095 1184 aa34.65■■■■□ 3.14
UBE2D3-215ENST00000503418 RIMBP3CA6NJZ7 1639 aa34.63■■■■□ 3.13
UBE2D3-215ENST00000503418 RIMBP3BA6NNM3 1639 aa34.63■■■■□ 3.13
UBE2D3-215ENST00000503418 RIMBP3Q9UFD9 1639 aa34.63■■■■□ 3.13
UBE2D3-215ENST00000503418 SNAPC4Q5SXM2 1469 aa34.58■■■■□ 3.13
UBE2D3-215ENST00000503418 ARHGEF11O15085 1522 aa34.54■■■■□ 3.12
UBE2D3-215ENST00000503418 GRIN2BQ13224 1484 aa34.52■■■■□ 3.12
UBE2D3-215ENST00000503418 MAGI1Q96QZ7 1491 aaPredicted RBP34.48■■■■□ 3.11
UBE2D3-215ENST00000503418 PBRM1Q86U86 1689 aa34.47■■■■□ 3.11
UBE2D3-215ENST00000503418 ABCA10Q8WWZ4 1543 aa34.45■■■■□ 3.11
UBE2D3-215ENST00000503418 GAPVD1Q14C86 1478 aa34.45■■■■□ 3.1
UBE2D3-215ENST00000503418 WRNQ14191 1432 aaPredicted RBP eCLIP34.42■■■■□ 3.15e-6■■■■■ 29.2
UBE2D3-215ENST00000503418 CHMP7Q8WUX9 453 aaPredicted RBP34.42■■■■□ 3.1
UBE2D3-215ENST00000503418 TOP2BQ02880 1626 aa34.41■■■■□ 3.1
UBE2D3-215ENST00000503418 BIVM-ERCC5R4GMW8 1640 aa34.41■■■■□ 3.1
UBE2D3-215ENST00000503418 SYNJ1O43426 1573 aa34.4■■■■□ 3.1
UBE2D3-215ENST00000503418 ABCA5Q8WWZ7 1642 aa34.39■■■■□ 3.1
UBE2D3-215ENST00000503418 SYNJ2O15056 1496 aa34.36■■■■□ 3.09
UBE2D3-215ENST00000503418 CLASP1Q7Z460 1538 aa34.29■■■■□ 3.08
UBE2D3-215ENST00000503418 CYB5RLQ6IPT4 315 aa34.26■■■■□ 3.08
UBE2D3-215ENST00000503418 ARAP1Q96P48 1450 aa34.22■■■■□ 3.07
UBE2D3-215ENST00000503418 ADAMTS12P58397 1594 aa34.12■■■■□ 3.05
UBE2D3-215ENST00000503418 GRIN2AQ12879 1464 aa34.08■■■■□ 3.05
UBE2D3-215ENST00000503418 ERICH3Q5RHP9 1530 aa34.04■■■■□ 3.04
UBE2D3-215ENST00000503418 FHAD1B1AJZ9 1412 aa34.01■■■■□ 3.03
UBE2D3-215ENST00000503418 CEP170Q5SW79 1584 aa33.95■■■■□ 3.03
UBE2D3-215ENST00000503418 NUP160Q12769 1436 aa33.93■■■■□ 3.02
UBE2D3-215ENST00000503418 TRHP20396 242 aaPredicted RBP33.81■■■■□ 3
UBE2D3-215ENST00000503418 ERCC6L2Q5T890 1561 aa33.81■■■■□ 3
UBE2D3-215ENST00000503418 SHROOM2Q13796 1616 aa33.75■■■□□ 2.99
UBE2D3-215ENST00000503418 KIF27Q86VH2 1401 aa33.74■■■□□ 2.99
UBE2D3-215ENST00000503418 IGF1RP08069 1367 aa33.65■■■□□ 2.98
UBE2D3-215ENST00000503418 CUL7Q14999 1698 aa33.64■■■□□ 2.98
UBE2D3-215ENST00000503418 RUSC2Q8N2Y8 1516 aa33.63■■■□□ 2.97
Retrieved 100 of 20,778 RNA–protein pairs in 6.8 ms