RNA–Protein interactions for RNA: ENST00000502781.5

LSM6-202, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM6, Length 1,352 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-202ENST00000502781 RIMBP3BA6NNM3 1639 aa41.89■■■■■ 4.3
LSM6-202ENST00000502781 RIMBP3Q9UFD9 1639 aa41.89■■■■■ 4.3
LSM6-202ENST00000502781 SHROOM2Q13796 1616 aa41.83■■■■■ 4.29
LSM6-202ENST00000502781 FAM9AQ8IZU1 332 aaPredicted RBP41.83■■■■■ 4.29
LSM6-202ENST00000502781 JPH4Q96JJ6 628 aa41.76■■■■■ 4.28
LSM6-202ENST00000502781 ARAP1Q96P48 1450 aa41.66■■■■■ 4.26
LSM6-202ENST00000502781 PRG4Q92954 1404 aaPredicted RBP41.65■■■■■ 4.26
LSM6-202ENST00000502781 ERCC6L2Q5T890 1561 aa41.65■■■■■ 4.26
LSM6-202ENST00000502781 IQGAP2Q13576 1575 aa41.64■■■■■ 4.26
LSM6-202ENST00000502781 KIF21BO75037 1637 aa41.6■■■■■ 4.25
LSM6-202ENST00000502781 CYB5RLQ6IPT4 315 aa41.53■■■■■ 4.24
LSM6-202ENST00000502781 CTTNBP2Q8WZ74 1663 aa41.51■■■■■ 4.24
LSM6-202ENST00000502781 UGGT2Q9NYU1 1516 aa41.47■■■■■ 4.23
LSM6-202ENST00000502781 GOLGA3Q08378 1498 aa41.38■■■■■ 4.22
LSM6-202ENST00000502781 DISP1Q96F81 1524 aa41.38■■■■■ 4.22
LSM6-202ENST00000502781 CARMIL2Q6F5E8 1435 aa41.38■■■■■ 4.21
LSM6-202ENST00000502781 TNIKQ9UKE5 1360 aa41.25■■■■■ 4.19
LSM6-202ENST00000502781 KIAA0556O60303 1618 aa41.24■■■■■ 4.19
LSM6-202ENST00000502781 UBTFP17480 764 aaKnown RBP41.2■■■■■ 4.19
LSM6-202ENST00000502781 EHMT2Q96KQ7 1210 aa41.2■■■■■ 4.19
LSM6-202ENST00000502781 PTPRGP23470 1445 aa41.19■■■■■ 4.18
LSM6-202ENST00000502781 SAMD9Q5K651 1589 aa41.08■■■■■ 4.17
LSM6-202ENST00000502781 TTBK1Q5TCY1 1321 aaPredicted RBP40.99■■■■■ 4.15
LSM6-202ENST00000502781 RANGAP1P46060 587 aaPredicted RBP40.96■■■■■ 4.15
LSM6-202ENST00000502781 EFCAB5A4FU69 1503 aa40.96■■■■■ 4.15
LSM6-202ENST00000502781 ADCY10Q96PN6 1610 aa40.95■■■■■ 4.15
LSM6-202ENST00000502781 P3H3Q8IVL6 736 aa40.95■■■■■ 4.15
LSM6-202ENST00000502781 UACAQ9BZF9 1416 aa40.94■■■■■ 4.14
LSM6-202ENST00000502781 UHRF1BP1LA0JNW5 1464 aa40.92■■■■■ 4.14
LSM6-202ENST00000502781 ABCC2Q92887 1545 aa40.85■■■■■ 4.13
LSM6-202ENST00000502781 FHOD3Q2V2M9 1422 aa40.84■■■■■ 4.13
LSM6-202ENST00000502781 PLB1Q6P1J6 1458 aa40.82■■■■■ 4.13
LSM6-202ENST00000502781 ARHGAP35Q9NRY4 1499 aa40.82■■■■■ 4.13
LSM6-202ENST00000502781 ABCA8O94911 1581 aa40.81■■■■■ 4.12
LSM6-202ENST00000502781 NPM1P06748 294 aaKnown RBP eCLIP40.76■■■■■ 4.12
LSM6-202ENST00000502781 LOC105371045A0A1W2PR82 267 aa40.73■■■■■ 4.11
LSM6-202ENST00000502781 KDM5BQ9UGL1 1544 aa40.72■■■■■ 4.11
LSM6-202ENST00000502781 MAPKBP1O60336 1514 aa40.69■■■■■ 4.1
LSM6-202ENST00000502781 CLIP1P30622 1438 aa40.65■■■■■ 4.1
LSM6-202ENST00000502781 RAPGEF6Q8TEU7 1601 aa40.59■■■■■ 4.09
LSM6-202ENST00000502781 FMN1Q68DA7 1419 aa40.58■■■■■ 4.09
LSM6-202ENST00000502781 ZCCHC11Q5TAX3 1644 aaKnown RBP40.54■■■■■ 4.08
LSM6-202ENST00000502781 CEP162Q5TB80 1403 aa40.54■■■■■ 4.08
LSM6-202ENST00000502781 TRHP20396 242 aaPredicted RBP40.52■■■■■ 4.08
LSM6-202ENST00000502781 NUP153P49790 1475 aaKnown RBP40.51■■■■■ 4.08
LSM6-202ENST00000502781 ASXL2Q76L83 1435 aa40.5■■■■■ 4.07
LSM6-202ENST00000502781 ATP10BO94823 1461 aa40.48■■■■■ 4.07
LSM6-202ENST00000502781 ABCC10Q5T3U5 1492 aa40.46■■■■■ 4.07
LSM6-202ENST00000502781 ARID3CA6NKF2 412 aa40.37■■■■■ 4.05
LSM6-202ENST00000502781 DIP2BQ9P265 1576 aa40.36■■■■■ 4.05
LSM6-202ENST00000502781 WDR7Q9Y4E6 1490 aa40.34■■■■■ 4.05
LSM6-202ENST00000502781 KIF13AQ9H1H9 1805 aa40.31■■■■■ 4.04
LSM6-202ENST00000502781 CASKIN1Q8WXD9 1431 aa40.31■■■■■ 4.04
LSM6-202ENST00000502781 FAM69CQ0P6D2 419 aa40.31■■■■■ 4.04
LSM6-202ENST00000502781 HECW1Q76N89 1606 aa40.31■■■■■ 4.04
LSM6-202ENST00000502781 EPRSP07814 1512 aaKnown RBP40.27■■■■■ 4.04
LSM6-202ENST00000502781 PCF11O94913 1555 aaKnown RBP40.25■■■■■ 4.03
LSM6-202ENST00000502781 GLI2P10070 1586 aa40.23■■■■■ 4.03
LSM6-202ENST00000502781 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP40.22■■■■■ 4.03
LSM6-202ENST00000502781 HNRNPUL2Q1KMD3 747 aaKnown RBP40.22■■■■■ 4.03
LSM6-202ENST00000502781 FYCO1Q9BQS8 1478 aa40.21■■■■■ 4.03
LSM6-202ENST00000502781 CDK13Q14004 1512 aaKnown RBP40.21■■■■■ 4.03
LSM6-202ENST00000502781 ATP1B4Q9UN42 357 aaPredicted RBP40.2■■■■■ 4.03
LSM6-202ENST00000502781 PLEKHD1A6NEE1 506 aa40.12■■■■■ 4.01
LSM6-202ENST00000502781 KCNH8Q96L42 1107 aa40.11■■■■■ 4.01
LSM6-202ENST00000502781 LRRIQ1Q96JM4 1722 aa40.09■■■■■ 4.01
LSM6-202ENST00000502781 CCDC18Q5T9S5 1454 aa40.09■■■■■ 4.01
LSM6-202ENST00000502781 VPS8Q8N3P4 1428 aa40.06■■■■■ 4
LSM6-202ENST00000502781 MAP3K4Q9Y6R4 1608 aa40.03■■■■■ 4
LSM6-202ENST00000502781 CDK11AQ9UQ88 783 aaPredicted RBP40.02■■■■■ 4
LSM6-202ENST00000502781 ABCA9Q8IUA7 1624 aa39.94■■■■□ 3.98
LSM6-202ENST00000502781 CFAP43Q8NDM7 1665 aa39.94■■■■□ 3.98
LSM6-202ENST00000502781 TROQ12816 1431 aaPredicted RBP39.93■■■■□ 3.98
LSM6-202ENST00000502781 CD109Q6YHK3 1445 aa39.93■■■■□ 3.98
LSM6-202ENST00000502781 PPRC1Q5VV67 1664 aaKnown RBP39.91■■■■□ 3.98
LSM6-202ENST00000502781 TSPOAP1O95153 1857 aa39.89■■■■□ 3.98
LSM6-202ENST00000502781 MAGI3Q5TCQ9 1506 aa39.88■■■■□ 3.97
LSM6-202ENST00000502781 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP39.84■■■■□ 3.973e-11■■■■■ 27.7
LSM6-202ENST00000502781 TEX14Q8IWB6 1497 aa39.81■■■■□ 3.96
LSM6-202ENST00000502781 TTC37Q6PGP7 1564 aa39.77■■■■□ 3.96
LSM6-202ENST00000502781 KIF14Q15058 1648 aa39.75■■■■□ 3.95
LSM6-202ENST00000502781 TIAM1Q13009 1591 aa39.7■■■■□ 3.95
LSM6-202ENST00000502781 MAP3K1Q13233 1512 aa39.7■■■■□ 3.95
LSM6-202ENST00000502781 MTUS2Q5JR59 1369 aa39.69■■■■□ 3.94
LSM6-202ENST00000502781 PLCH2O75038 1416 aa39.64■■■■□ 3.94
LSM6-202ENST00000502781 EHBP1L1Q8N3D4 1523 aa39.64■■■■□ 3.94
LSM6-202ENST00000502781 NEO1Q92859 1461 aa39.61■■■■□ 3.93
LSM6-202ENST00000502781 PHLDB1Q86UU1 1377 aa39.6■■■■□ 3.93
LSM6-202ENST00000502781 COL17A1Q9UMD9 1497 aaPredicted RBP39.6■■■■□ 3.93
LSM6-202ENST00000502781 KDM6BO15054 1643 aa39.59■■■■□ 3.93
LSM6-202ENST00000502781 ARAP3Q8WWN8 1544 aa39.59■■■■□ 3.93
LSM6-202ENST00000502781 LRRC9Q6ZRR7 1453 aa39.56■■■■□ 3.92
LSM6-202ENST00000502781 FANCAO15360 1455 aa39.55■■■■□ 3.92
LSM6-202ENST00000502781 MYO5CQ9NQX4 1742 aa39.53■■■■□ 3.92
LSM6-202ENST00000502781 KANK4Q5T7N3 995 aaPredicted RBP39.5■■■■□ 3.91
LSM6-202ENST00000502781 AKNAQ7Z591 1439 aa39.48■■■■□ 3.91
LSM6-202ENST00000502781 APLP2Q06481 763 aa39.47■■■■□ 3.91
LSM6-202ENST00000502781 EFCAB2Q5VUJ9 269 aa39.46■■■■□ 3.91
LSM6-202ENST00000502781 CFAP74Q9C0B2 1584 aa39.46■■■■□ 3.91
LSM6-202ENST00000502781 GPATCH8Q9UKJ3 1502 aaKnown RBP39.45■■■■□ 3.91
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms