RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 FAM69CQ0P6D2 419 aa29.97■■■□□ 2.39
VIM-208ENST00000497849 MAPKBP1O60336 1514 aa29.92■■■□□ 2.38
VIM-208ENST00000497849 DIP2BQ9P265 1576 aa29.91■■■□□ 2.38
VIM-208ENST00000497849 RUSC2Q8N2Y8 1516 aa29.91■■■□□ 2.38
VIM-208ENST00000497849 ADCY10Q96PN6 1610 aa29.86■■■□□ 2.37
VIM-208ENST00000497849 KDM4FA0A1W2PPD8 638 aa29.85■■■□□ 2.37
VIM-208ENST00000497849 NPM1P06748 294 aaKnown RBP eCLIP29.85■■■□□ 2.37
VIM-208ENST00000497849 SUPT5HO00267 1087 aaKnown RBP29.81■■■□□ 2.36
VIM-208ENST00000497849 KDM6BO15054 1643 aa29.81■■■□□ 2.36
VIM-208ENST00000497849 TSPOAP1O95153 1857 aa29.74■■■□□ 2.35
VIM-208ENST00000497849 KIAA0586Q9BVV6 1533 aa29.66■■■□□ 2.34
VIM-208ENST00000497849 ILDR1Q86SU0 546 aaPredicted RBP29.62■■■□□ 2.33
VIM-208ENST00000497849 IGF1RP08069 1367 aa29.53■■■□□ 2.32
VIM-208ENST00000497849 PTPRGP23470 1445 aa29.5■■■□□ 2.31
VIM-208ENST00000497849 PPRC1Q5VV67 1664 aaKnown RBP29.5■■■□□ 2.31
VIM-208ENST00000497849 CUL7Q14999 1698 aa29.49■■■□□ 2.31
VIM-208ENST00000497849 ABCC2Q92887 1545 aa29.45■■■□□ 2.31
VIM-208ENST00000497849 GLI2P10070 1586 aa29.43■■■□□ 2.3
VIM-208ENST00000497849 ADGRL1O94910 1474 aa29.42■■■□□ 2.3
VIM-208ENST00000497849 ASXL2Q76L83 1435 aa29.42■■■□□ 2.3
VIM-208ENST00000497849 KIF27Q86VH2 1401 aa29.42■■■□□ 2.3
VIM-208ENST00000497849 TTBK1Q5TCY1 1321 aaPredicted RBP29.42■■■□□ 2.3
VIM-208ENST00000497849 PLB1Q6P1J6 1458 aa29.39■■■□□ 2.3
VIM-208ENST00000497849 TNIKQ9UKE5 1360 aa29.39■■■□□ 2.29
VIM-208ENST00000497849 COL17A1Q9UMD9 1497 aaPredicted RBP29.36■■■□□ 2.29
VIM-208ENST00000497849 CARMIL2Q6F5E8 1435 aa29.34■■■□□ 2.29
VIM-208ENST00000497849 UHRF1BP1LA0JNW5 1464 aa29.32■■■□□ 2.28
VIM-208ENST00000497849 CARMIL1Q5VZK9 1371 aa29.3■■■□□ 2.28
VIM-208ENST00000497849 UACAQ9BZF9 1416 aa29.27■■■□□ 2.28
VIM-208ENST00000497849 MAP3K4Q9Y6R4 1608 aa29.27■■■□□ 2.28
VIM-208ENST00000497849 IQGAP2Q13576 1575 aa29.26■■■□□ 2.28
VIM-208ENST00000497849 HECW2Q9P2P5 1572 aa29.26■■■□□ 2.27
VIM-208ENST00000497849 EPRSP07814 1512 aaKnown RBP29.25■■■□□ 2.27
VIM-208ENST00000497849 DISP1Q96F81 1524 aa29.22■■■□□ 2.27
VIM-208ENST00000497849 KDM5BQ9UGL1 1544 aa29.21■■■□□ 2.27
VIM-208ENST00000497849 TEX14Q8IWB6 1497 aa29.17■■■□□ 2.26
VIM-208ENST00000497849 ZCCHC11Q5TAX3 1644 aaKnown RBP29.15■■■□□ 2.26
VIM-208ENST00000497849 UGGT2Q9NYU1 1516 aa29.07■■■□□ 2.24
VIM-208ENST00000497849 KIAA0556O60303 1618 aa29.03■■■□□ 2.24
VIM-208ENST00000497849 WDR7Q9Y4E6 1490 aa29.01■■■□□ 2.23
VIM-208ENST00000497849 RAPGEF2Q9Y4G8 1499 aa28.95■■■□□ 2.22
VIM-208ENST00000497849 MAGI3Q5TCQ9 1506 aa28.93■■■□□ 2.22
VIM-208ENST00000497849 CFAP43Q8NDM7 1665 aa28.92■■■□□ 2.22
VIM-208ENST00000497849 CD109Q6YHK3 1445 aa28.91■■■□□ 2.22
VIM-208ENST00000497849 KIF21BO75037 1637 aa28.86■■■□□ 2.21
VIM-208ENST00000497849 KCNH8Q96L42 1107 aa28.83■■■□□ 2.21
VIM-208ENST00000497849 ABCA8O94911 1581 aa28.82■■■□□ 2.2
VIM-208ENST00000497849 FBXO41Q8TF61 875 aa28.79■■■□□ 2.2
VIM-208ENST00000497849 CTTNBP2Q8WZ74 1663 aa28.78■■■□□ 2.2
VIM-208ENST00000497849 ARAP3Q8WWN8 1544 aa28.74■■■□□ 2.19
VIM-208ENST00000497849 GOLGA3Q08378 1498 aa28.72■■■□□ 2.19
VIM-208ENST00000497849 ADAMTSL3P82987 1691 aa28.68■■■□□ 2.18
VIM-208ENST00000497849 PTPRMP28827 1452 aa28.66■■■□□ 2.18
VIM-208ENST00000497849 ATP10BO94823 1461 aa28.58■■■□□ 2.17
VIM-208ENST00000497849 ABCA9Q8IUA7 1624 aa28.58■■■□□ 2.17
VIM-208ENST00000497849 ARID3CA6NKF2 412 aa28.56■■■□□ 2.16
VIM-208ENST00000497849 PHLDB1Q86UU1 1377 aa28.55■■■□□ 2.16
VIM-208ENST00000497849 RAPGEF3O95398 923 aa28.54■■■□□ 2.16
VIM-208ENST00000497849 BCORL1Q5H9F3 1711 aa28.53■■■□□ 2.16
VIM-208ENST00000497849 PRXQ9BXM0 1461 aa28.51■■■□□ 2.15
VIM-208ENST00000497849 MADDQ8WXG6 1647 aa28.51■■■□□ 2.15
VIM-208ENST00000497849 PCF11O94913 1555 aaKnown RBP28.5■■■□□ 2.15
VIM-208ENST00000497849 FRMPD1Q5SYB0 1578 aa28.49■■■□□ 2.15
VIM-208ENST00000497849 LMTK3Q96Q04 1460 aa28.48■■■□□ 2.15
VIM-208ENST00000497849 NEO1Q92859 1461 aa28.47■■■□□ 2.15
VIM-208ENST00000497849 P3H3Q8IVL6 736 aa28.45■■■□□ 2.14
VIM-208ENST00000497849 ARID4BQ4LE39 1312 aaPredicted RBP28.4■■■□□ 2.14
VIM-208ENST00000497849 FAM9AQ8IZU1 332 aaPredicted RBP28.38■■■□□ 2.13
VIM-208ENST00000497849 RIMS1Q86UR5 1692 aaKnown RBP28.38■■■□□ 2.13
VIM-208ENST00000497849 RAPGEF6Q8TEU7 1601 aa28.36■■■□□ 2.13
VIM-208ENST00000497849 SAMD9Q5K651 1589 aa28.35■■■□□ 2.13
VIM-208ENST00000497849 ARHGEF40Q8TER5 1519 aa28.34■■■□□ 2.13
VIM-208ENST00000497849 RICTORQ6R327 1708 aa28.31■■■□□ 2.12
VIM-208ENST00000497849 HSPA2P54652 639 aa28.3■■■□□ 2.12
VIM-208ENST00000497849 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP28.28■■■□□ 2.12
VIM-208ENST00000497849 HNRNPUL2Q1KMD3 747 aaKnown RBP28.28■■■□□ 2.12
VIM-208ENST00000497849 NUP153P49790 1475 aaKnown RBP28.27■■■□□ 2.12
VIM-208ENST00000497849 DENND4BO75064 1496 aaPredicted RBP28.26■■■□□ 2.11
VIM-208ENST00000497849 SIGLEC1Q9BZZ2 1709 aa28.24■■■□□ 2.11
VIM-208ENST00000497849 FHOD3Q2V2M9 1422 aa28.23■■■□□ 2.11
VIM-208ENST00000497849 AKNAQ7Z591 1439 aa28.22■■■□□ 2.11
VIM-208ENST00000497849 PLPPR3Q6T4P5 718 aa28.19■■■□□ 2.1
VIM-208ENST00000497849 CERKQ8TCT0 537 aa28.19■■■□□ 2.1
VIM-208ENST00000497849 ZMYM4Q5VZL5 1548 aa28.18■■■□□ 2.1
VIM-208ENST00000497849 FANCAO15360 1455 aa28.17■■■□□ 2.1
VIM-208ENST00000497849 POGZQ7Z3K3 1410 aa28.17■■■□□ 2.1
VIM-208ENST00000497849 CFAP74Q9C0B2 1584 aa28.16■■■□□ 2.1
VIM-208ENST00000497849 YEATS2Q9ULM3 1422 aa28.15■■■□□ 2.1
VIM-208ENST00000497849 ZFYVE16Q7Z3T8 1539 aa28.14■■■□□ 2.1
VIM-208ENST00000497849 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP28.14■■■□□ 2.16e-21■■■□□ 15.4
VIM-208ENST00000497849 PLEKHD1A6NEE1 506 aa28.12■■■□□ 2.09
VIM-208ENST00000497849 EFCAB5A4FU69 1503 aa28.11■■■□□ 2.09
VIM-208ENST00000497849 FER1L4A9Z1Z3 1794 aa28.11■■■□□ 2.09
VIM-208ENST00000497849 TTC37Q6PGP7 1564 aa28.11■■■□□ 2.09
VIM-208ENST00000497849 CSRNP3Q8WYN3 585 aa28.08■■■□□ 2.09
VIM-208ENST00000497849 MAGI2Q86UL8 1455 aa28.08■■■□□ 2.09
VIM-208ENST00000497849 HECW1Q76N89 1606 aa28.07■■■□□ 2.08
VIM-208ENST00000497849 MLECQ14165 292 aa28.06■■■□□ 2.08
VIM-208ENST00000497849 RANGAP1P46060 587 aaPredicted RBP28.04■■■□□ 2.08
VIM-208ENST00000497849 ARHGEF12Q9NZN5 1544 aa27.99■■■□□ 2.07
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms