RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 NISCHQ9Y2I1 1504 aa42.41■■■■■ 4.38
VIM-208ENST00000497849 ABCC9O60706 1549 aa38.99■■■■□ 3.83
VIM-208ENST00000497849 CCDC180Q9P1Z9 1646 aa38.34■■■■□ 3.73
VIM-208ENST00000497849 DNAJC5BQ9UF47 199 aa37.22■■■■□ 3.55
VIM-208ENST00000497849 RB1CC1Q8TDY2 1594 aa36.79■■■■□ 3.48
VIM-208ENST00000497849 NACADO15069 1562 aa36.39■■■■□ 3.42
VIM-208ENST00000497849 PABPN1Q86U42 306 aaKnown RBP eCLIP36.19■■■■□ 3.38
VIM-208ENST00000497849 UNC13AQ9UPW8 1703 aa36.05■■■■□ 3.36
VIM-208ENST00000497849 DCAF8L2P0C7V8 631 aa36.02■■■■□ 3.36
VIM-208ENST00000497849 BICRAQ9NZM4 1560 aa35.82■■■■□ 3.32
VIM-208ENST00000497849 MYO15BQ96JP2 1530 aa35.67■■■■□ 3.3
VIM-208ENST00000497849 CC2D2AQ9P2K1 1620 aa35.2■■■■□ 3.23
VIM-208ENST00000497849 CECR2Q9BXF3 1484 aa35.18■■■■□ 3.22
VIM-208ENST00000497849 SHROOM4Q9ULL8 1493 aa35.18■■■■□ 3.22
VIM-208ENST00000497849 ZCCHC6Q5VYS8 1495 aaKnown RBP35.01■■■■□ 3.19
VIM-208ENST00000497849 DCAF1Q9Y4B6 1507 aa34.98■■■■□ 3.19
VIM-208ENST00000497849 EIF4G1Q04637 1599 aaKnown RBP34.96■■■■□ 3.19
VIM-208ENST00000497849 SCRIBQ14160 1630 aa34.89■■■■□ 3.18
VIM-208ENST00000497849 DNAJC5Q9H3Z4 198 aa34.6■■■■□ 3.13
VIM-208ENST00000497849 CUX2O14529 1486 aa33.84■■■■□ 3.01
VIM-208ENST00000497849 ERCC6Q03468 1493 aa33.66■■■□□ 2.98
VIM-208ENST00000497849 NCAPD3P42695 1498 aa33.62■■■□□ 2.97
VIM-208ENST00000497849 ATAD2BQ9ULI0 1458 aa33.43■■■□□ 2.94
VIM-208ENST00000497849 NESP48681 1621 aa33.33■■■□□ 2.93
VIM-208ENST00000497849 HMGXB3Q12766 1538 aa33.3■■■□□ 2.92
VIM-208ENST00000497849 SMARCA2P51531 1590 aa33.26■■■□□ 2.92
VIM-208ENST00000497849 SMARCA4P51532 1647 aa33.23■■■□□ 2.91
VIM-208ENST00000497849 THOC2Q8NI27 1593 aaKnown RBP33.13■■■□□ 2.89
VIM-208ENST00000497849 BAZ1BQ9UIG0 1483 aaKnown RBP33.04■■■□□ 2.88
VIM-208ENST00000497849 LAMC3Q9Y6N6 1575 aa32.95■■■□□ 2.86
VIM-208ENST00000497849 BAZ1AQ9NRL2 1556 aaPredicted RBP32.94■■■□□ 2.86
VIM-208ENST00000497849 PEG3Q9GZU2 1588 aa32.92■■■□□ 2.86
VIM-208ENST00000497849 KIF21AQ7Z4S6 1674 aa32.88■■■□□ 2.85
VIM-208ENST00000497849 TRIM41Q8WV44 630 aa32.78■■■□□ 2.84
VIM-208ENST00000497849 PDS5BQ9NTI5 1447 aa32.76■■■□□ 2.83
VIM-208ENST00000497849 MROH2BQ7Z745 1585 aa32.69■■■□□ 2.82
VIM-208ENST00000497849 CADPSQ9ULU8 1353 aa32.55■■■□□ 2.8
VIM-208ENST00000497849 MRC2Q9UBG0 1479 aa32.54■■■□□ 2.8
VIM-208ENST00000497849 WDR62O43379 1518 aa32.51■■■□□ 2.79
VIM-208ENST00000497849 WIZO95785 1651 aa32.27■■■□□ 2.76
VIM-208ENST00000497849 CEP164Q9UPV0 1460 aa32.26■■■□□ 2.75
VIM-208ENST00000497849 FANCD2Q9BXW9 1451 aa32.18■■■□□ 2.74
VIM-208ENST00000497849 OSCARQ8IYS5 282 aa32.18■■■□□ 2.74
VIM-208ENST00000497849 CFTRP13569 1480 aa32.05■■■□□ 2.72
VIM-208ENST00000497849 URB2Q14146 1524 aaKnown RBP32■■■□□ 2.71
VIM-208ENST00000497849 RIMBP3CA6NJZ7 1639 aa31.89■■■□□ 2.7
VIM-208ENST00000497849 RIMBP3BA6NNM3 1639 aa31.89■■■□□ 2.7
VIM-208ENST00000497849 RIMBP3Q9UFD9 1639 aa31.89■■■□□ 2.7
VIM-208ENST00000497849 TOP2AP11388 1531 aaKnown RBP31.79■■■□□ 2.68
VIM-208ENST00000497849 RSF1Q96T23 1441 aaPredicted RBP31.75■■■□□ 2.67
VIM-208ENST00000497849 ZNF608Q9ULD9 1512 aaPredicted RBP31.71■■■□□ 2.67
VIM-208ENST00000497849 ARHGEF11O15085 1522 aa31.7■■■□□ 2.67
VIM-208ENST00000497849 PRDM2Q13029 1718 aa31.69■■■□□ 2.66
VIM-208ENST00000497849 IFT140Q96RY7 1462 aa31.65■■■□□ 2.66
VIM-208ENST00000497849 TOPBP1Q92547 1522 aa31.51■■■□□ 2.63
VIM-208ENST00000497849 EIF4G3O43432 1585 aaKnown RBP31.49■■■□□ 2.63
VIM-208ENST00000497849 CYB5RLQ6IPT4 315 aa31.49■■■□□ 2.63
VIM-208ENST00000497849 CCDC88BA6NC98 1476 aa31.45■■■□□ 2.62
VIM-208ENST00000497849 CHD1O14646 1710 aa31.39■■■□□ 2.62
VIM-208ENST00000497849 ABCC8Q09428 1581 aa31.35■■■□□ 2.61
VIM-208ENST00000497849 ARAP1Q96P48 1450 aa31.35■■■□□ 2.61
VIM-208ENST00000497849 DNMBPQ6XZF7 1577 aa31.33■■■□□ 2.61
VIM-208ENST00000497849 AQRO60306 1485 aaKnown RBP eCLIP31.33■■■□□ 2.61
VIM-208ENST00000497849 TARBP1Q13395 1621 aaKnown RBP31.31■■■□□ 2.6
VIM-208ENST00000497849 TRHP20396 242 aaPredicted RBP31.31■■■□□ 2.6
VIM-208ENST00000497849 FBLN2P98095 1184 aa31.19■■■□□ 2.58
VIM-208ENST00000497849 POLA1P09884 1462 aaPredicted RBP31.15■■■□□ 2.58
VIM-208ENST00000497849 RAD54L2Q9Y4B4 1467 aa31.07■■■□□ 2.56
VIM-208ENST00000497849 TDRD9Q8NDG6 1382 aaKnown RBP31.02■■■□□ 2.56
VIM-208ENST00000497849 CLASP1Q7Z460 1538 aa31.01■■■□□ 2.55
VIM-208ENST00000497849 SOGA1O94964 1423 aa30.98■■■□□ 2.55
VIM-208ENST00000497849 SNAPC4Q5SXM2 1469 aa30.97■■■□□ 2.55
VIM-208ENST00000497849 SYNJ1O43426 1573 aa30.89■■■□□ 2.54
VIM-208ENST00000497849 WDR97A6NE52 1622 aa30.89■■■□□ 2.54
VIM-208ENST00000497849 AEBP2Q6ZN18 517 aaPredicted RBP30.86■■■□□ 2.53
VIM-208ENST00000497849 CHMP7Q8WUX9 453 aaPredicted RBP30.86■■■□□ 2.53
VIM-208ENST00000497849 FGD5Q6ZNL6 1462 aa30.86■■■□□ 2.53
VIM-208ENST00000497849 MAGI1Q96QZ7 1491 aaPredicted RBP30.84■■■□□ 2.53
VIM-208ENST00000497849 GRIN2BQ13224 1484 aa30.77■■■□□ 2.52
VIM-208ENST00000497849 SYNJ2O15056 1496 aa30.76■■■□□ 2.52
VIM-208ENST00000497849 CUX1P39880 1505 aa30.74■■■□□ 2.51
VIM-208ENST00000497849 GAPVD1Q14C86 1478 aa30.7■■■□□ 2.51
VIM-208ENST00000497849 PBRM1Q86U86 1689 aa30.65■■■□□ 2.5
VIM-208ENST00000497849 ERCC6L2Q5T890 1561 aa30.51■■■□□ 2.47
VIM-208ENST00000497849 ABCA5Q8WWZ7 1642 aa30.51■■■□□ 2.47
VIM-208ENST00000497849 ABCA10Q8WWZ4 1543 aa30.47■■■□□ 2.47
VIM-208ENST00000497849 GRIN2AQ12879 1464 aa30.4■■■□□ 2.46
VIM-208ENST00000497849 CEP170Q5SW79 1584 aa30.37■■■□□ 2.45
VIM-208ENST00000497849 NUP160Q12769 1436 aa30.33■■■□□ 2.45
VIM-208ENST00000497849 ADAMTS12P58397 1594 aa30.31■■■□□ 2.44
VIM-208ENST00000497849 SHROOM2Q13796 1616 aa30.29■■■□□ 2.44
VIM-208ENST00000497849 KIF13AQ9H1H9 1805 aa30.28■■■□□ 2.44
VIM-208ENST00000497849 WRNQ14191 1432 aaPredicted RBP eCLIP30.18■■■□□ 2.42
VIM-208ENST00000497849 FHAD1B1AJZ9 1412 aa30.17■■■□□ 2.42
VIM-208ENST00000497849 BIVM-ERCC5R4GMW8 1640 aa30.07■■■□□ 2.4
VIM-208ENST00000497849 PRG4Q92954 1404 aaPredicted RBP30.07■■■□□ 2.4
VIM-208ENST00000497849 ERICH3Q5RHP9 1530 aa30.06■■■□□ 2.4
VIM-208ENST00000497849 TOP2BQ02880 1626 aa30.06■■■□□ 2.4
VIM-208ENST00000497849 JPH4Q96JJ6 628 aa30■■■□□ 2.39
VIM-208ENST00000497849 ABCC10Q5T3U5 1492 aa29.99■■■□□ 2.39
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms