RNA–Protein interactions for RNA: ENST00000496347.1

HDAC4-213, Transcript of histone deacetylase 4, humanhuman

TSL 3

Gene HDAC4, Length 995 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-213ENST00000496347 KIAA0586Q9BVV6 1533 aa27.05■■□□□ 1.92
HDAC4-213ENST00000496347 CARMIL1Q5VZK9 1371 aa27.02■■□□□ 1.92
HDAC4-213ENST00000496347 JPH4Q96JJ6 628 aa26.98■■□□□ 1.91
HDAC4-213ENST00000496347 IQGAP2Q13576 1575 aa26.91■■□□□ 1.9
HDAC4-213ENST00000496347 TRHP20396 242 aaPredicted RBP26.9■■□□□ 1.9
HDAC4-213ENST00000496347 RAPGEF2Q9Y4G8 1499 aa26.88■■□□□ 1.89
HDAC4-213ENST00000496347 ADCY10Q96PN6 1610 aa26.79■■□□□ 1.88
HDAC4-213ENST00000496347 CTTNBP2Q8WZ74 1663 aa26.77■■□□□ 1.88
HDAC4-213ENST00000496347 CARMIL2Q6F5E8 1435 aa26.76■■□□□ 1.87
HDAC4-213ENST00000496347 UGGT2Q9NYU1 1516 aa26.74■■□□□ 1.87
HDAC4-213ENST00000496347 MAPKBP1O60336 1514 aa26.72■■□□□ 1.87
HDAC4-213ENST00000496347 PRXQ9BXM0 1461 aa26.71■■□□□ 1.87
HDAC4-213ENST00000496347 KIF13AQ9H1H9 1805 aa26.68■■□□□ 1.86
HDAC4-213ENST00000496347 DISP1Q96F81 1524 aa26.68■■□□□ 1.86
HDAC4-213ENST00000496347 TNIKQ9UKE5 1360 aa26.68■■□□□ 1.86
HDAC4-213ENST00000496347 KIAA0556O60303 1618 aa26.66■■□□□ 1.86
HDAC4-213ENST00000496347 PTPRGP23470 1445 aa26.65■■□□□ 1.86
HDAC4-213ENST00000496347 EEA1Q15075 1411 aa26.61■■□□□ 1.85
HDAC4-213ENST00000496347 DIP2BQ9P265 1576 aa26.58■■□□□ 1.85
HDAC4-213ENST00000496347 UHRF1BP1LA0JNW5 1464 aa26.57■■□□□ 1.84
HDAC4-213ENST00000496347 ABCC10Q5T3U5 1492 aa26.57■■□□□ 1.84
HDAC4-213ENST00000496347 NPM1P06748 294 aaKnown RBP eCLIP26.57■■□□□ 1.84
HDAC4-213ENST00000496347 ABCC2Q92887 1545 aa26.56■■□□□ 1.84
HDAC4-213ENST00000496347 GOLGA3Q08378 1498 aa26.55■■□□□ 1.84
HDAC4-213ENST00000496347 UACAQ9BZF9 1416 aa26.51■■□□□ 1.83
HDAC4-213ENST00000496347 CSRNP3Q8WYN3 585 aa26.46■■□□□ 1.83
HDAC4-213ENST00000496347 TTBK1Q5TCY1 1321 aaPredicted RBP26.43■■□□□ 1.82
HDAC4-213ENST00000496347 KDM5BQ9UGL1 1544 aa26.43■■□□□ 1.82
HDAC4-213ENST00000496347 PLB1Q6P1J6 1458 aa26.41■■□□□ 1.82
HDAC4-213ENST00000496347 KIF21BO75037 1637 aa26.4■■□□□ 1.82
HDAC4-213ENST00000496347 ZCCHC11Q5TAX3 1644 aaKnown RBP26.4■■□□□ 1.82
HDAC4-213ENST00000496347 FAM69CQ0P6D2 419 aa26.39■■□□□ 1.82
HDAC4-213ENST00000496347 ASXL2Q76L83 1435 aa26.38■■□□□ 1.81
HDAC4-213ENST00000496347 SAMD9Q5K651 1589 aa26.37■■□□□ 1.81
HDAC4-213ENST00000496347 ABCA8O94911 1581 aa26.37■■□□□ 1.81
HDAC4-213ENST00000496347 GLI2P10070 1586 aa26.35■■□□□ 1.81
HDAC4-213ENST00000496347 TSPOAP1O95153 1857 aa26.3■■□□□ 1.8
HDAC4-213ENST00000496347 CHIC1Q5VXU3 224 aa26.26■■□□□ 1.79
HDAC4-213ENST00000496347 EPRSP07814 1512 aaKnown RBP26.25■■□□□ 1.79
HDAC4-213ENST00000496347 WDR7Q9Y4E6 1490 aa26.24■■□□□ 1.79
HDAC4-213ENST00000496347 MAP3K4Q9Y6R4 1608 aa26.24■■□□□ 1.79
HDAC4-213ENST00000496347 PPRC1Q5VV67 1664 aaKnown RBP26.23■■□□□ 1.79
HDAC4-213ENST00000496347 KDM6BO15054 1643 aa26.22■■□□□ 1.79
HDAC4-213ENST00000496347 EFCAB5A4FU69 1503 aa26.21■■□□□ 1.79
HDAC4-213ENST00000496347 FAM9AQ8IZU1 332 aaPredicted RBP26.19■■□□□ 1.78
HDAC4-213ENST00000496347 RAPGEF6Q8TEU7 1601 aa26.17■■□□□ 1.78
HDAC4-213ENST00000496347 CFAP43Q8NDM7 1665 aa26.12■■□□□ 1.77
HDAC4-213ENST00000496347 TEX14Q8IWB6 1497 aa26.11■■□□□ 1.77
HDAC4-213ENST00000496347 FHOD3Q2V2M9 1422 aa26.08■■□□□ 1.77
HDAC4-213ENST00000496347 P3H3Q8IVL6 736 aa26.08■■□□□ 1.77
HDAC4-213ENST00000496347 ATP10BO94823 1461 aa26.05■■□□□ 1.76
HDAC4-213ENST00000496347 NUP153P49790 1475 aaKnown RBP26.04■■□□□ 1.76
HDAC4-213ENST00000496347 MAGI3Q5TCQ9 1506 aa26.01■■□□□ 1.75
HDAC4-213ENST00000496347 ABCA9Q8IUA7 1624 aa25.97■■□□□ 1.75
HDAC4-213ENST00000496347 RANGAP1P46060 587 aaPredicted RBP25.96■■□□□ 1.75
HDAC4-213ENST00000496347 CD109Q6YHK3 1445 aa25.96■■□□□ 1.75
HDAC4-213ENST00000496347 UBTFP17480 764 aaKnown RBP25.94■■□□□ 1.74
HDAC4-213ENST00000496347 ARID3CA6NKF2 412 aa25.91■■□□□ 1.74
HDAC4-213ENST00000496347 ARHGAP35Q9NRY4 1499 aa25.91■■□□□ 1.74
HDAC4-213ENST00000496347 FMN1Q68DA7 1419 aa25.89■■□□□ 1.74
HDAC4-213ENST00000496347 KCNH8Q96L42 1107 aa25.89■■□□□ 1.74
HDAC4-213ENST00000496347 COL17A1Q9UMD9 1497 aaPredicted RBP25.89■■□□□ 1.73
HDAC4-213ENST00000496347 HECW1Q76N89 1606 aa25.88■■□□□ 1.73
HDAC4-213ENST00000496347 AEBP2Q6ZN18 517 aaPredicted RBP25.83■■□□□ 1.73
HDAC4-213ENST00000496347 EHMT2Q96KQ7 1210 aa25.83■■□□□ 1.73
HDAC4-213ENST00000496347 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.8■■□□□ 1.72
HDAC4-213ENST00000496347 HNRNPUL2Q1KMD3 747 aaKnown RBP25.8■■□□□ 1.72
HDAC4-213ENST00000496347 ARAP3Q8WWN8 1544 aa25.79■■□□□ 1.72
HDAC4-213ENST00000496347 CDK13Q14004 1512 aaKnown RBP25.78■■□□□ 1.72
HDAC4-213ENST00000496347 PHLDB1Q86UU1 1377 aa25.77■■□□□ 1.72
HDAC4-213ENST00000496347 NEO1Q92859 1461 aa25.77■■□□□ 1.72
HDAC4-213ENST00000496347 CFAP74Q9C0B2 1584 aa25.74■■□□□ 1.71
HDAC4-213ENST00000496347 TTC37Q6PGP7 1564 aa25.73■■□□□ 1.71
HDAC4-213ENST00000496347 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP25.73■■□□□ 1.71
HDAC4-213ENST00000496347 PLEKHD1A6NEE1 506 aa25.72■■□□□ 1.71
HDAC4-213ENST00000496347 PCF11O94913 1555 aaKnown RBP25.69■■□□□ 1.7
HDAC4-213ENST00000496347 LRRIQ1Q96JM4 1722 aa25.68■■□□□ 1.7
HDAC4-213ENST00000496347 KIF14Q15058 1648 aa25.65■■□□□ 1.7
HDAC4-213ENST00000496347 ADGRL1O94910 1474 aa25.65■■□□□ 1.7
HDAC4-213ENST00000496347 CCDC18Q5T9S5 1454 aa25.64■■□□□ 1.69
HDAC4-213ENST00000496347 FRMPD1Q5SYB0 1578 aa25.64■■□□□ 1.69
HDAC4-213ENST00000496347 CASKIN1Q8WXD9 1431 aa25.63■■□□□ 1.69
HDAC4-213ENST00000496347 CLIP1P30622 1438 aa25.63■■□□□ 1.69
HDAC4-213ENST00000496347 FANCAO15360 1455 aa25.62■■□□□ 1.69
HDAC4-213ENST00000496347 FYCO1Q9BQS8 1478 aa25.62■■□□□ 1.69
HDAC4-213ENST00000496347 MYO5CQ9NQX4 1742 aa25.62■■□□□ 1.69
HDAC4-213ENST00000496347 KDM4FA0A1W2PPD8 638 aa25.61■■□□□ 1.69
HDAC4-213ENST00000496347 CDK11AQ9UQ88 783 aaPredicted RBP25.59■■□□□ 1.69
HDAC4-213ENST00000496347 TROQ12816 1431 aaPredicted RBP25.59■■□□□ 1.69
HDAC4-213ENST00000496347 RICTORQ6R327 1708 aa25.59■■□□□ 1.69
HDAC4-213ENST00000496347 ATP1B4Q9UN42 357 aaPredicted RBP25.56■■□□□ 1.68
HDAC4-213ENST00000496347 ARHGEF40Q8TER5 1519 aa25.54■■□□□ 1.68
HDAC4-213ENST00000496347 AKNAQ7Z591 1439 aa25.54■■□□□ 1.68
HDAC4-213ENST00000496347 PLCH2O75038 1416 aa25.53■■□□□ 1.68
HDAC4-213ENST00000496347 DENND4BO75064 1496 aaPredicted RBP25.53■■□□□ 1.68
HDAC4-213ENST00000496347 ZMYM4Q5VZL5 1548 aa25.53■■□□□ 1.68
HDAC4-213ENST00000496347 RAPGEF3O95398 923 aa25.47■■□□□ 1.67
HDAC4-213ENST00000496347 PREX2Q70Z35 1606 aa25.45■■□□□ 1.67
HDAC4-213ENST00000496347 POGZQ7Z3K3 1410 aa25.45■■□□□ 1.66
HDAC4-213ENST00000496347 CEP162Q5TB80 1403 aa25.44■■□□□ 1.66
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms