RNA–Protein interactions for RNA: ENST00000496347.1

HDAC4-213, Transcript of histone deacetylase 4, humanhuman

TSL 3

Gene HDAC4, Length 995 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-213ENST00000496347 NISCHQ9Y2I1 1504 aa38.99■■■■□ 3.83
HDAC4-213ENST00000496347 CCDC180Q9P1Z9 1646 aa34.98■■■■□ 3.19
HDAC4-213ENST00000496347 ABCC9O60706 1549 aa34.33■■■■□ 3.09
HDAC4-213ENST00000496347 RB1CC1Q8TDY2 1594 aa33■■■□□ 2.87
HDAC4-213ENST00000496347 NACADO15069 1562 aa32.88■■■□□ 2.85
HDAC4-213ENST00000496347 MYO15BQ96JP2 1530 aa32.62■■■□□ 2.81
HDAC4-213ENST00000496347 ZCCHC6Q5VYS8 1495 aaKnown RBP32.47■■■□□ 2.79
HDAC4-213ENST00000496347 DCAF8L2P0C7V8 631 aa32.44■■■□□ 2.78
HDAC4-213ENST00000496347 DCAF1Q9Y4B6 1507 aa32.34■■■□□ 2.77
HDAC4-213ENST00000496347 UNC13AQ9UPW8 1703 aa32.28■■■□□ 2.76
HDAC4-213ENST00000496347 BICRAQ9NZM4 1560 aa31.98■■■□□ 2.71
HDAC4-213ENST00000496347 PABPN1Q86U42 306 aaKnown RBP eCLIP31.89■■■□□ 2.7
HDAC4-213ENST00000496347 SHROOM4Q9ULL8 1493 aa31.77■■■□□ 2.68
HDAC4-213ENST00000496347 SCRIBQ14160 1630 aa31.75■■■□□ 2.67
HDAC4-213ENST00000496347 DNAJC5BQ9UF47 199 aa31.67■■■□□ 2.66
HDAC4-213ENST00000496347 EIF4G1Q04637 1599 aaKnown RBP31.18■■■□□ 2.58
HDAC4-213ENST00000496347 CC2D2AQ9P2K1 1620 aa31.12■■■□□ 2.57
HDAC4-213ENST00000496347 CECR2Q9BXF3 1484 aa30.93■■■□□ 2.54
HDAC4-213ENST00000496347 SMARCA4P51532 1647 aa30.38■■■□□ 2.45
HDAC4-213ENST00000496347 BAZ1AQ9NRL2 1556 aaPredicted RBP30.3■■■□□ 2.44
HDAC4-213ENST00000496347 NCAPD3P42695 1498 aa30.28■■■□□ 2.44
HDAC4-213ENST00000496347 SMARCA2P51531 1590 aa30.26■■■□□ 2.43
HDAC4-213ENST00000496347 ATAD2BQ9ULI0 1458 aa30.24■■■□□ 2.43
HDAC4-213ENST00000496347 HMGXB3Q12766 1538 aa30.21■■■□□ 2.43
HDAC4-213ENST00000496347 PEG3Q9GZU2 1588 aa30.14■■■□□ 2.42
HDAC4-213ENST00000496347 MROH2BQ7Z745 1585 aa30■■■□□ 2.39
HDAC4-213ENST00000496347 BAZ1BQ9UIG0 1483 aaKnown RBP29.99■■■□□ 2.39
HDAC4-213ENST00000496347 WIZO95785 1651 aa29.69■■■□□ 2.34
HDAC4-213ENST00000496347 ERCC6Q03468 1493 aa29.67■■■□□ 2.34
HDAC4-213ENST00000496347 LAMC3Q9Y6N6 1575 aa29.61■■■□□ 2.33
HDAC4-213ENST00000496347 NESP48681 1621 aa29.6■■■□□ 2.33
HDAC4-213ENST00000496347 CUX2O14529 1486 aa29.55■■■□□ 2.32
HDAC4-213ENST00000496347 RSF1Q96T23 1441 aaPredicted RBP29.52■■■□□ 2.32
HDAC4-213ENST00000496347 TOP2AP11388 1531 aaKnown RBP29.42■■■□□ 2.3
HDAC4-213ENST00000496347 THOC2Q8NI27 1593 aaKnown RBP29.38■■■□□ 2.29
HDAC4-213ENST00000496347 KIF21AQ7Z4S6 1674 aa29.36■■■□□ 2.29
HDAC4-213ENST00000496347 PDS5BQ9NTI5 1447 aa29.35■■■□□ 2.29
HDAC4-213ENST00000496347 CADPSQ9ULU8 1353 aa29.34■■■□□ 2.29
HDAC4-213ENST00000496347 CFTRP13569 1480 aa29.15■■■□□ 2.26
HDAC4-213ENST00000496347 MRC2Q9UBG0 1479 aa29.1■■■□□ 2.25
HDAC4-213ENST00000496347 WDR62O43379 1518 aa29.07■■■□□ 2.24
HDAC4-213ENST00000496347 CEP164Q9UPV0 1460 aa29.07■■■□□ 2.24
HDAC4-213ENST00000496347 PRDM2Q13029 1718 aa29.06■■■□□ 2.24
HDAC4-213ENST00000496347 FANCD2Q9BXW9 1451 aa29.04■■■□□ 2.24
HDAC4-213ENST00000496347 CCDC88BA6NC98 1476 aa28.97■■■□□ 2.23
HDAC4-213ENST00000496347 DNAJC5Q9H3Z4 198 aa28.86■■■□□ 2.21
HDAC4-213ENST00000496347 URB2Q14146 1524 aaKnown RBP28.77■■■□□ 2.2
HDAC4-213ENST00000496347 ABCC8Q09428 1581 aa28.55■■■□□ 2.16
HDAC4-213ENST00000496347 TOPBP1Q92547 1522 aa28.55■■■□□ 2.16
HDAC4-213ENST00000496347 DNMBPQ6XZF7 1577 aa28.54■■■□□ 2.16
HDAC4-213ENST00000496347 IFT140Q96RY7 1462 aa28.47■■■□□ 2.15
HDAC4-213ENST00000496347 SUPT5HO00267 1087 aaKnown RBP28.33■■■□□ 2.13
HDAC4-213ENST00000496347 ZNF608Q9ULD9 1512 aaPredicted RBP28.31■■■□□ 2.12
HDAC4-213ENST00000496347 TARBP1Q13395 1621 aaKnown RBP28.3■■■□□ 2.12
HDAC4-213ENST00000496347 EIF4G3O43432 1585 aaKnown RBP28.3■■■□□ 2.12
HDAC4-213ENST00000496347 POLA1P09884 1462 aaPredicted RBP28.28■■■□□ 2.12
HDAC4-213ENST00000496347 CUX1P39880 1505 aa28.2■■■□□ 2.1
HDAC4-213ENST00000496347 WDR97A6NE52 1622 aa28.17■■■□□ 2.1
HDAC4-213ENST00000496347 FGD5Q6ZNL6 1462 aa28.15■■■□□ 2.1
HDAC4-213ENST00000496347 SOGA1O94964 1423 aa28.09■■■□□ 2.09
HDAC4-213ENST00000496347 RAD54L2Q9Y4B4 1467 aa28.08■■■□□ 2.09
HDAC4-213ENST00000496347 OSCARQ8IYS5 282 aa28.08■■■□□ 2.09
HDAC4-213ENST00000496347 AQRO60306 1485 aaKnown RBP eCLIP28.06■■■□□ 2.081e-7■■■□□ 16.7
HDAC4-213ENST00000496347 CHD1O14646 1710 aa28■■■□□ 2.07
HDAC4-213ENST00000496347 BIVM-ERCC5R4GMW8 1640 aa27.95■■■□□ 2.06
HDAC4-213ENST00000496347 TDRD9Q8NDG6 1382 aaKnown RBP27.93■■■□□ 2.06
HDAC4-213ENST00000496347 TOP2BQ02880 1626 aa27.92■■■□□ 2.06
HDAC4-213ENST00000496347 ABCA10Q8WWZ4 1543 aa27.9■■■□□ 2.06
HDAC4-213ENST00000496347 MAGI1Q96QZ7 1491 aaPredicted RBP27.89■■■□□ 2.05
HDAC4-213ENST00000496347 PBRM1Q86U86 1689 aa27.88■■■□□ 2.05
HDAC4-213ENST00000496347 ABCA5Q8WWZ7 1642 aa27.88■■■□□ 2.05
HDAC4-213ENST00000496347 GRIN2BQ13224 1484 aa27.88■■■□□ 2.05
HDAC4-213ENST00000496347 SNAPC4Q5SXM2 1469 aa27.88■■■□□ 2.05
HDAC4-213ENST00000496347 WRNQ14191 1432 aaPredicted RBP eCLIP27.87■■■□□ 2.05
HDAC4-213ENST00000496347 SYNJ1O43426 1573 aa27.86■■■□□ 2.05
HDAC4-213ENST00000496347 RIMBP3CA6NJZ7 1639 aa27.81■■■□□ 2.04
HDAC4-213ENST00000496347 RIMBP3BA6NNM3 1639 aa27.81■■■□□ 2.04
HDAC4-213ENST00000496347 RIMBP3Q9UFD9 1639 aa27.81■■■□□ 2.04
HDAC4-213ENST00000496347 GAPVD1Q14C86 1478 aa27.81■■■□□ 2.04
HDAC4-213ENST00000496347 ARHGEF11O15085 1522 aa27.77■■■□□ 2.04
HDAC4-213ENST00000496347 SYNJ2O15056 1496 aa27.75■■■□□ 2.03
HDAC4-213ENST00000496347 FBLN2P98095 1184 aa27.7■■■□□ 2.02
HDAC4-213ENST00000496347 TRIM41Q8WV44 630 aa27.7■■■□□ 2.02
HDAC4-213ENST00000496347 CLASP1Q7Z460 1538 aa27.69■■■□□ 2.02
HDAC4-213ENST00000496347 ADAMTS12P58397 1594 aa27.64■■■□□ 2.01
HDAC4-213ENST00000496347 CHMP7Q8WUX9 453 aaPredicted RBP27.62■■■□□ 2.01
HDAC4-213ENST00000496347 ERICH3Q5RHP9 1530 aa27.59■■■□□ 2.01
HDAC4-213ENST00000496347 GRIN2AQ12879 1464 aa27.53■■■□□ 2
HDAC4-213ENST00000496347 ARAP1Q96P48 1450 aa27.51■■□□□ 1.99
HDAC4-213ENST00000496347 FHAD1B1AJZ9 1412 aa27.49■■□□□ 1.99
HDAC4-213ENST00000496347 NUP160Q12769 1436 aa27.42■■□□□ 1.98
HDAC4-213ENST00000496347 CEP170Q5SW79 1584 aa27.41■■□□□ 1.98
HDAC4-213ENST00000496347 CYB5RLQ6IPT4 315 aa27.34■■□□□ 1.97
HDAC4-213ENST00000496347 KIF27Q86VH2 1401 aa27.33■■□□□ 1.96
HDAC4-213ENST00000496347 SHROOM2Q13796 1616 aa27.32■■□□□ 1.96
HDAC4-213ENST00000496347 CUL7Q14999 1698 aa27.32■■□□□ 1.96
HDAC4-213ENST00000496347 RUSC2Q8N2Y8 1516 aa27.25■■□□□ 1.95
HDAC4-213ENST00000496347 ERCC6L2Q5T890 1561 aa27.18■■□□□ 1.94
HDAC4-213ENST00000496347 IGF1RP08069 1367 aa27.17■■□□□ 1.94
HDAC4-213ENST00000496347 PRG4Q92954 1404 aaPredicted RBP27.05■■□□□ 1.92
Retrieved 100 of 20,778 RNA–protein pairs in 65.6 ms