RNA–Protein interactions for RNA: ENST00000493674.5

VPS52-220, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 878 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-220ENST00000493674 CEP170Q5SW79 1584 aa20.43■□□□□ 0.86
VPS52-220ENST00000493674 IQGAP2Q13576 1575 aa20.41■□□□□ 0.86
VPS52-220ENST00000493674 NUP160Q12769 1436 aa20.39■□□□□ 0.85
VPS52-220ENST00000493674 OSCARQ8IYS5 282 aa20.39■□□□□ 0.85
VPS52-220ENST00000493674 SAMD9Q5K651 1589 aa20.38■□□□□ 0.85
VPS52-220ENST00000493674 CLIP1P30622 1438 aa20.36■□□□□ 0.85
VPS52-220ENST00000493674 EFCAB5A4FU69 1503 aa20.36■□□□□ 0.85
VPS52-220ENST00000493674 KIAA0586Q9BVV6 1533 aa20.33■□□□□ 0.85
VPS52-220ENST00000493674 ARHGAP35Q9NRY4 1499 aa20.32■□□□□ 0.84
VPS52-220ENST00000493674 CLASP1Q7Z460 1538 aa20.32■□□□□ 0.84
VPS52-220ENST00000493674 UGGT2Q9NYU1 1516 aa20.32■□□□□ 0.84
VPS52-220ENST00000493674 ARAP1Q96P48 1450 aa20.3■□□□□ 0.84
VPS52-220ENST00000493674 SHROOM2Q13796 1616 aa20.28■□□□□ 0.84
VPS52-220ENST00000493674 CHMP7Q8WUX9 453 aaPredicted RBP20.28■□□□□ 0.84
VPS52-220ENST00000493674 FBLN2P98095 1184 aa20.24■□□□□ 0.83
VPS52-220ENST00000493674 RIMBP3CA6NJZ7 1639 aa20.24■□□□□ 0.83
VPS52-220ENST00000493674 RIMBP3BA6NNM3 1639 aa20.24■□□□□ 0.83
VPS52-220ENST00000493674 RIMBP3Q9UFD9 1639 aa20.24■□□□□ 0.83
VPS52-220ENST00000493674 KIAA0556O60303 1618 aa20.23■□□□□ 0.83
VPS52-220ENST00000493674 ARHGEF11O15085 1522 aa20.2■□□□□ 0.82
VPS52-220ENST00000493674 VPS8Q8N3P4 1428 aa20.19■□□□□ 0.82
VPS52-220ENST00000493674 DISP1Q96F81 1524 aa20.18■□□□□ 0.82
VPS52-220ENST00000493674 LRRIQ1Q96JM4 1722 aa20.12■□□□□ 0.81
VPS52-220ENST00000493674 PCF11O94913 1555 aaKnown RBP20.12■□□□□ 0.81
VPS52-220ENST00000493674 FHOD3Q2V2M9 1422 aa20.11■□□□□ 0.81
VPS52-220ENST00000493674 CFAP43Q8NDM7 1665 aa20.08■□□□□ 0.81
VPS52-220ENST00000493674 RANGAP1P46060 587 aaPredicted RBP20.08■□□□□ 0.81
VPS52-220ENST00000493674 FMN1Q68DA7 1419 aa20.05■□□□□ 0.8
VPS52-220ENST00000493674 FYCO1Q9BQS8 1478 aa20.05■□□□□ 0.8
VPS52-220ENST00000493674 JPH4Q96JJ6 628 aa20.03■□□□□ 0.8
VPS52-220ENST00000493674 CARMIL2Q6F5E8 1435 aa20.02■□□□□ 0.79
VPS52-220ENST00000493674 CASKIN1Q8WXD9 1431 aa20.02■□□□□ 0.79
VPS52-220ENST00000493674 ERCC6L2Q5T890 1561 aa20.01■□□□□ 0.79
VPS52-220ENST00000493674 MAP3K1Q13233 1512 aa20■□□□□ 0.79
VPS52-220ENST00000493674 PRG4Q92954 1404 aaPredicted RBP20■□□□□ 0.79
VPS52-220ENST00000493674 RAPGEF6Q8TEU7 1601 aa19.99■□□□□ 0.79
VPS52-220ENST00000493674 HECW1Q76N89 1606 aa19.98■□□□□ 0.79
VPS52-220ENST00000493674 TIAM1Q13009 1591 aa19.98■□□□□ 0.79
VPS52-220ENST00000493674 P3H3Q8IVL6 736 aa19.97■□□□□ 0.79
VPS52-220ENST00000493674 ABCA8O94911 1581 aa19.95■□□□□ 0.78
VPS52-220ENST00000493674 CCDC18Q5T9S5 1454 aa19.87■□□□□ 0.77
VPS52-220ENST00000493674 NUP153P49790 1475 aaKnown RBP19.86■□□□□ 0.77
VPS52-220ENST00000493674 PLB1Q6P1J6 1458 aa19.85■□□□□ 0.77
VPS52-220ENST00000493674 EPRSP07814 1512 aaKnown RBP19.84■□□□□ 0.77
VPS52-220ENST00000493674 PTPRGP23470 1445 aa19.81■□□□□ 0.76
VPS52-220ENST00000493674 LRRC9Q6ZRR7 1453 aa19.8■□□□□ 0.76
VPS52-220ENST00000493674 CYB5RLQ6IPT4 315 aa19.8■□□□□ 0.76
VPS52-220ENST00000493674 ABCC2Q92887 1545 aa19.8■□□□□ 0.76
VPS52-220ENST00000493674 CDK13Q14004 1512 aaKnown RBP19.79■□□□□ 0.76
VPS52-220ENST00000493674 UHRF1BP1LA0JNW5 1464 aa19.78■□□□□ 0.76
VPS52-220ENST00000493674 MAGI3Q5TCQ9 1506 aa19.77■□□□□ 0.76
VPS52-220ENST00000493674 EHBP1L1Q8N3D4 1523 aa19.77■□□□□ 0.76
VPS52-220ENST00000493674 ADCY10Q96PN6 1610 aa19.76■□□□□ 0.75
VPS52-220ENST00000493674 UACAQ9BZF9 1416 aa19.76■□□□□ 0.75
VPS52-220ENST00000493674 SUPT6HQ7KZ85 1726 aaKnown RBP19.75■□□□□ 0.75
VPS52-220ENST00000493674 APLP2Q06481 763 aa19.74■□□□□ 0.75
VPS52-220ENST00000493674 ZCCHC11Q5TAX3 1644 aaKnown RBP19.73■□□□□ 0.75
VPS52-220ENST00000493674 KANK4Q5T7N3 995 aaPredicted RBP19.71■□□□□ 0.75
VPS52-220ENST00000493674 ATP10BO94823 1461 aa19.69■□□□□ 0.74
VPS52-220ENST00000493674 KDM5BQ9UGL1 1544 aa19.68■□□□□ 0.74
VPS52-220ENST00000493674 PPARGC1BQ86YN6 1023 aaKnown RBP19.66■□□□□ 0.74
VPS52-220ENST00000493674 TTBK1Q5TCY1 1321 aaPredicted RBP19.66■□□□□ 0.74
VPS52-220ENST00000493674 ATP1B4Q9UN42 357 aaPredicted RBP19.64■□□□□ 0.73
VPS52-220ENST00000493674 KIF14Q15058 1648 aa19.62■□□□□ 0.73
VPS52-220ENST00000493674 TROQ12816 1431 aaPredicted RBP19.61■□□□□ 0.73
VPS52-220ENST00000493674 MTUS2Q5JR59 1369 aa19.61■□□□□ 0.73
VPS52-220ENST00000493674 NCOA2Q15596 1464 aa19.6■□□□□ 0.73
VPS52-220ENST00000493674 MAPKBP1O60336 1514 aa19.6■□□□□ 0.73
VPS52-220ENST00000493674 CDC42BPAQ5VT25 1732 aa19.59■□□□□ 0.73
VPS52-220ENST00000493674 ITSN2Q9NZM3 1697 aa19.59■□□□□ 0.73
VPS52-220ENST00000493674 TRIM26Q12899 539 aaPredicted RBP19.58■□□□□ 0.72
VPS52-220ENST00000493674 RRBP1Q9P2E9 1410 aaKnown RBP19.58■□□□□ 0.72
VPS52-220ENST00000493674 KIF13AQ9H1H9 1805 aa19.55■□□□□ 0.72
VPS52-220ENST00000493674 PHLDB1Q86UU1 1377 aa19.55■□□□□ 0.72
VPS52-220ENST00000493674 ARID3CA6NKF2 412 aa19.52■□□□□ 0.72
VPS52-220ENST00000493674 CDK11AQ9UQ88 783 aaPredicted RBP19.52■□□□□ 0.72
VPS52-220ENST00000493674 ABCC10Q5T3U5 1492 aa19.52■□□□□ 0.72
VPS52-220ENST00000493674 MYO5CQ9NQX4 1742 aa19.51■□□□□ 0.71
VPS52-220ENST00000493674 MYOM3Q5VTT5 1437 aa19.51■□□□□ 0.71
VPS52-220ENST00000493674 CDC42BPBQ9Y5S2 1711 aa19.5■□□□□ 0.71
VPS52-220ENST00000493674 PREX2Q70Z35 1606 aa19.5■□□□□ 0.71
VPS52-220ENST00000493674 TTC37Q6PGP7 1564 aa19.49■□□□□ 0.71
VPS52-220ENST00000493674 PTPN23Q9H3S7 1636 aa19.48■□□□□ 0.71
VPS52-220ENST00000493674 FGD6Q6ZV73 1430 aa19.47■□□□□ 0.71
VPS52-220ENST00000493674 DIP2BQ9P265 1576 aa19.47■□□□□ 0.71
VPS52-220ENST00000493674 NPM1P06748 294 aaKnown RBP eCLIP19.46■□□□□ 0.71
VPS52-220ENST00000493674 WDR7Q9Y4E6 1490 aa19.46■□□□□ 0.71
VPS52-220ENST00000493674 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP19.46■□□□□ 0.71
VPS52-220ENST00000493674 ABCA9Q8IUA7 1624 aa19.45■□□□□ 0.7
VPS52-220ENST00000493674 TCOF1Q13428 1488 aaKnown RBP19.44■□□□□ 0.7
VPS52-220ENST00000493674 CCNB3Q8WWL7 1395 aa19.44■□□□□ 0.7
VPS52-220ENST00000493674 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.44■□□□□ 0.7
VPS52-220ENST00000493674 MIA2Q96PC5 1412 aa19.43■□□□□ 0.7
VPS52-220ENST00000493674 PLEKHD1A6NEE1 506 aa19.43■□□□□ 0.7
VPS52-220ENST00000493674 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.43■□□□□ 0.7
VPS52-220ENST00000493674 HNRNPUL2Q1KMD3 747 aaKnown RBP19.43■□□□□ 0.7
VPS52-220ENST00000493674 GPATCH8Q9UKJ3 1502 aaKnown RBP19.42■□□□□ 0.7
VPS52-220ENST00000493674 PCGF6Q9BYE7 350 aa19.4■□□□□ 0.7
VPS52-220ENST00000493674 ASXL2Q76L83 1435 aa19.4■□□□□ 0.7
VPS52-220ENST00000493674 CROCC2H7BZ55 1655 aa19.38■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms