RNA–Protein interactions for RNA: ENST00000489573.5

SMC4-221, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 1 (best)

Gene SMC4, Length 1,553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-221ENST00000489573 RANGAP1P46060 587 aaPredicted RBP34.38■■■■□ 3.09
SMC4-221ENST00000489573 CHMP7Q8WUX9 453 aaPredicted RBP34.34■■■■□ 3.09
SMC4-221ENST00000489573 ARHGAP35Q9NRY4 1499 aa34.27■■■■□ 3.08
SMC4-221ENST00000489573 FBLN2P98095 1184 aa34.25■■■■□ 3.07
SMC4-221ENST00000489573 ARAP1Q96P48 1450 aa34.23■■■■□ 3.07
SMC4-221ENST00000489573 IQGAP2Q13576 1575 aa34.22■■■■□ 3.07
SMC4-221ENST00000489573 EFCAB5A4FU69 1503 aa34.2■■■■□ 3.07
SMC4-221ENST00000489573 KIAA0586Q9BVV6 1533 aa34.19■■■■□ 3.06
SMC4-221ENST00000489573 NUP160Q12769 1436 aa34.19■■■■□ 3.06
SMC4-221ENST00000489573 CEP170Q5SW79 1584 aa34.18■■■■□ 3.06
SMC4-221ENST00000489573 VPS8Q8N3P4 1428 aa34.18■■■■□ 3.06
SMC4-221ENST00000489573 CHD1O14646 1710 aa34.14■■■■□ 3.06
SMC4-221ENST00000489573 SAMD9Q5K651 1589 aa34.1■■■■□ 3.05
SMC4-221ENST00000489573 UGGT2Q9NYU1 1516 aa34.06■■■■□ 3.04
SMC4-221ENST00000489573 FHOD3Q2V2M9 1422 aa34.01■■■■□ 3.03
SMC4-221ENST00000489573 P3H3Q8IVL6 736 aa33.99■■■■□ 3.03
SMC4-221ENST00000489573 DISP1Q96F81 1524 aa33.88■■■■□ 3.01
SMC4-221ENST00000489573 KIAA0556O60303 1618 aa33.88■■■■□ 3.01
SMC4-221ENST00000489573 FMN1Q68DA7 1419 aa33.87■■■■□ 3.01
SMC4-221ENST00000489573 JPH4Q96JJ6 628 aa33.85■■■■□ 3.01
SMC4-221ENST00000489573 PCF11O94913 1555 aaKnown RBP33.8■■■■□ 3
SMC4-221ENST00000489573 APLP2Q06481 763 aa33.79■■■■□ 3
SMC4-221ENST00000489573 CLASP1Q7Z460 1538 aa33.79■■■■□ 3
SMC4-221ENST00000489573 CARMIL2Q6F5E8 1435 aa33.78■■■■□ 3
SMC4-221ENST00000489573 CASKIN1Q8WXD9 1431 aa33.76■■■□□ 2.99
SMC4-221ENST00000489573 FYCO1Q9BQS8 1478 aa33.76■■■□□ 2.99
SMC4-221ENST00000489573 SHROOM2Q13796 1616 aa33.75■■■□□ 2.99
SMC4-221ENST00000489573 PPARGC1BQ86YN6 1023 aaKnown RBP33.73■■■□□ 2.99
SMC4-221ENST00000489573 PRG4Q92954 1404 aaPredicted RBP33.69■■■□□ 2.98
SMC4-221ENST00000489573 OSCARQ8IYS5 282 aa33.67■■■□□ 2.98
SMC4-221ENST00000489573 MAP3K1Q13233 1512 aa33.65■■■□□ 2.98
SMC4-221ENST00000489573 TIAM1Q13009 1591 aa33.61■■■□□ 2.97
SMC4-221ENST00000489573 ATP1B4Q9UN42 357 aaPredicted RBP33.6■■■□□ 2.97
SMC4-221ENST00000489573 CFAP43Q8NDM7 1665 aa33.58■■■□□ 2.97
SMC4-221ENST00000489573 HECW1Q76N89 1606 aa33.57■■■□□ 2.96
SMC4-221ENST00000489573 TRIM26Q12899 539 aaPredicted RBP33.55■■■□□ 2.96
SMC4-221ENST00000489573 TTBK1Q5TCY1 1321 aaPredicted RBP33.54■■■□□ 2.96
SMC4-221ENST00000489573 RAPGEF6Q8TEU7 1601 aa33.5■■■□□ 2.95
SMC4-221ENST00000489573 KANK4Q5T7N3 995 aaPredicted RBP33.5■■■□□ 2.95
SMC4-221ENST00000489573 ERCC6L2Q5T890 1561 aa33.49■■■□□ 2.95
SMC4-221ENST00000489573 CCDC18Q5T9S5 1454 aa33.48■■■□□ 2.95
SMC4-221ENST00000489573 LRRIQ1Q96JM4 1722 aa33.47■■■□□ 2.95
SMC4-221ENST00000489573 PTPRGP23470 1445 aa33.46■■■□□ 2.95
SMC4-221ENST00000489573 LRRC9Q6ZRR7 1453 aa33.44■■■□□ 2.94
SMC4-221ENST00000489573 PLB1Q6P1J6 1458 aa33.43■■■□□ 2.94
SMC4-221ENST00000489573 EPRSP07814 1512 aaKnown RBP33.41■■■□□ 2.94
SMC4-221ENST00000489573 ABCA8O94911 1581 aa33.41■■■□□ 2.94
SMC4-221ENST00000489573 NUP153P49790 1475 aaKnown RBP33.41■■■□□ 2.94
SMC4-221ENST00000489573 PCGF6Q9BYE7 350 aa33.39■■■□□ 2.94
SMC4-221ENST00000489573 CDK13Q14004 1512 aaKnown RBP33.33■■■□□ 2.93
SMC4-221ENST00000489573 MTUS2Q5JR59 1369 aa33.28■■■□□ 2.92
SMC4-221ENST00000489573 UACAQ9BZF9 1416 aa33.27■■■□□ 2.92
SMC4-221ENST00000489573 EHBP1L1Q8N3D4 1523 aa33.27■■■□□ 2.92
SMC4-221ENST00000489573 ARID3CA6NKF2 412 aa33.26■■■□□ 2.91
SMC4-221ENST00000489573 MAGI3Q5TCQ9 1506 aa33.22■■■□□ 2.91
SMC4-221ENST00000489573 ABCC2Q92887 1545 aa33.2■■■□□ 2.9
SMC4-221ENST00000489573 RIMBP3CA6NJZ7 1639 aa33.17■■■□□ 2.9
SMC4-221ENST00000489573 RIMBP3BA6NNM3 1639 aa33.17■■■□□ 2.9
SMC4-221ENST00000489573 RIMBP3Q9UFD9 1639 aa33.17■■■□□ 2.9
SMC4-221ENST00000489573 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP33.16■■■□□ 2.9
SMC4-221ENST00000489573 HNRNPUL2Q1KMD3 747 aaKnown RBP33.16■■■□□ 2.9
SMC4-221ENST00000489573 CDK11AQ9UQ88 783 aaPredicted RBP33.15■■■□□ 2.9
SMC4-221ENST00000489573 ATP10BO94823 1461 aa33.15■■■□□ 2.9
SMC4-221ENST00000489573 UHRF1BP1LA0JNW5 1464 aa33.14■■■□□ 2.9
SMC4-221ENST00000489573 SUPT6HQ7KZ85 1726 aaKnown RBP33.14■■■□□ 2.9
SMC4-221ENST00000489573 PHLDB1Q86UU1 1377 aa33.1■■■□□ 2.89
SMC4-221ENST00000489573 ARHGEF11O15085 1522 aa33.1■■■□□ 2.89
SMC4-221ENST00000489573 RRBP1Q9P2E9 1410 aaKnown RBP33.09■■■□□ 2.89
SMC4-221ENST00000489573 NCOA2Q15596 1464 aa33.09■■■□□ 2.89
SMC4-221ENST00000489573 TROQ12816 1431 aaPredicted RBP33.06■■■□□ 2.88
SMC4-221ENST00000489573 CCNB3Q8WWL7 1395 aa33.01■■■□□ 2.87
SMC4-221ENST00000489573 ADCY10Q96PN6 1610 aa32.99■■■□□ 2.87
SMC4-221ENST00000489573 KDM5BQ9UGL1 1544 aa32.99■■■□□ 2.87
SMC4-221ENST00000489573 PLEKHD1A6NEE1 506 aa32.98■■■□□ 2.87
SMC4-221ENST00000489573 MYOM3Q5VTT5 1437 aa32.95■■■□□ 2.87
SMC4-221ENST00000489573 ZCCHC11Q5TAX3 1644 aaKnown RBP32.95■■■□□ 2.86
SMC4-221ENST00000489573 CYB5RLQ6IPT4 315 aa32.92■■■□□ 2.86
SMC4-221ENST00000489573 FGD6Q6ZV73 1430 aa32.91■■■□□ 2.86
SMC4-221ENST00000489573 KIF14Q15058 1648 aa32.89■■■□□ 2.86
SMC4-221ENST00000489573 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP32.83■■■□□ 2.853e-9■■■■■ 72.1
SMC4-221ENST00000489573 MIA2Q96PC5 1412 aa32.8■■■□□ 2.84
SMC4-221ENST00000489573 FAM50AQ14320 339 aaKnown RBP32.79■■■□□ 2.84
SMC4-221ENST00000489573 ABCC10Q5T3U5 1492 aa32.79■■■□□ 2.84
SMC4-221ENST00000489573 PTPN23Q9H3S7 1636 aa32.77■■■□□ 2.84
SMC4-221ENST00000489573 ITSN2Q9NZM3 1697 aa32.76■■■□□ 2.83
SMC4-221ENST00000489573 TCOF1Q13428 1488 aaKnown RBP32.74■■■□□ 2.83
SMC4-221ENST00000489573 GPATCH8Q9UKJ3 1502 aaKnown RBP32.73■■■□□ 2.83
SMC4-221ENST00000489573 NPM1P06748 294 aaKnown RBP eCLIP32.7■■■□□ 2.82
SMC4-221ENST00000489573 WDR7Q9Y4E6 1490 aa32.69■■■□□ 2.82
SMC4-221ENST00000489573 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP32.66■■■□□ 2.821e-7■■■□□ 17.3
SMC4-221ENST00000489573 CDC42BPAQ5VT25 1732 aa32.66■■■□□ 2.82
SMC4-221ENST00000489573 ITGAEP38570 1179 aa32.65■■■□□ 2.82
SMC4-221ENST00000489573 ASXL2Q76L83 1435 aa32.64■■■□□ 2.82
SMC4-221ENST00000489573 TTC37Q6PGP7 1564 aa32.64■■■□□ 2.81
SMC4-221ENST00000489573 KCNH8Q96L42 1107 aa32.62■■■□□ 2.81
SMC4-221ENST00000489573 CFDP1Q9UEE9 299 aaPredicted RBP32.62■■■□□ 2.81
SMC4-221ENST00000489573 PREX2Q70Z35 1606 aa32.59■■■□□ 2.81
SMC4-221ENST00000489573 CAMSAP2Q08AD1 1489 aa32.56■■■□□ 2.8
SMC4-221ENST00000489573 MYO5CQ9NQX4 1742 aa32.53■■■□□ 2.8
SMC4-221ENST00000489573 ZNF644Q9H582 1327 aaPredicted RBP32.51■■■□□ 2.8
Retrieved 100 of 20,778 RNA–protein pairs in 59 ms