RNA–Protein interactions for RNA: ENST00000488801.5

PTCD3-217, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 568 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-217ENST00000488801 RAPGEF2Q9Y4G8 1499 aa31.5■■■□□ 2.63
PTCD3-217ENST00000488801 CTTNBP2Q8WZ74 1663 aa31.48■■■□□ 2.63
PTCD3-217ENST00000488801 KIAA0586Q9BVV6 1533 aa31.44■■■□□ 2.62
PTCD3-217ENST00000488801 ARAP1Q96P48 1450 aa31.41■■■□□ 2.62
PTCD3-217ENST00000488801 ERCC6L2Q5T890 1561 aa31.41■■■□□ 2.62
PTCD3-217ENST00000488801 IQGAP2Q13576 1575 aa31.37■■■□□ 2.61
PTCD3-217ENST00000488801 KIF21BO75037 1637 aa31.34■■■□□ 2.61
PTCD3-217ENST00000488801 CSRNP3Q8WYN3 585 aa31.28■■■□□ 2.6
PTCD3-217ENST00000488801 PRG4Q92954 1404 aaPredicted RBP31.23■■■□□ 2.59
PTCD3-217ENST00000488801 UGGT2Q9NYU1 1516 aa31.21■■■□□ 2.59
PTCD3-217ENST00000488801 JPH4Q96JJ6 628 aa31.21■■■□□ 2.59
PTCD3-217ENST00000488801 DISP1Q96F81 1524 aa31.12■■■□□ 2.57
PTCD3-217ENST00000488801 KIAA0556O60303 1618 aa31.1■■■□□ 2.57
PTCD3-217ENST00000488801 FAM9AQ8IZU1 332 aaPredicted RBP31.07■■■□□ 2.56
PTCD3-217ENST00000488801 CYB5RLQ6IPT4 315 aa31.06■■■□□ 2.56
PTCD3-217ENST00000488801 SAMD9Q5K651 1589 aa31■■■□□ 2.55
PTCD3-217ENST00000488801 GOLGA3Q08378 1498 aa31■■■□□ 2.55
PTCD3-217ENST00000488801 CARMIL2Q6F5E8 1435 aa30.99■■■□□ 2.55
PTCD3-217ENST00000488801 ADCY10Q96PN6 1610 aa30.95■■■□□ 2.54
PTCD3-217ENST00000488801 TNIKQ9UKE5 1360 aa30.92■■■□□ 2.54
PTCD3-217ENST00000488801 PTPRGP23470 1445 aa30.83■■■□□ 2.53
PTCD3-217ENST00000488801 EFCAB5A4FU69 1503 aa30.82■■■□□ 2.52
PTCD3-217ENST00000488801 UHRF1BP1LA0JNW5 1464 aa30.77■■■□□ 2.52
PTCD3-217ENST00000488801 ABCC2Q92887 1545 aa30.76■■■□□ 2.51
PTCD3-217ENST00000488801 ABCA8O94911 1581 aa30.75■■■□□ 2.51
PTCD3-217ENST00000488801 MAPKBP1O60336 1514 aa30.7■■■□□ 2.51
PTCD3-217ENST00000488801 UACAQ9BZF9 1416 aa30.7■■■□□ 2.5
PTCD3-217ENST00000488801 KIF13AQ9H1H9 1805 aa30.67■■■□□ 2.5
PTCD3-217ENST00000488801 ZCCHC11Q5TAX3 1644 aaKnown RBP30.65■■■□□ 2.5
PTCD3-217ENST00000488801 PLB1Q6P1J6 1458 aa30.64■■■□□ 2.5
PTCD3-217ENST00000488801 UBTFP17480 764 aaKnown RBP30.63■■■□□ 2.49
PTCD3-217ENST00000488801 KDM5BQ9UGL1 1544 aa30.63■■■□□ 2.49
PTCD3-217ENST00000488801 ARHGAP35Q9NRY4 1499 aa30.62■■■□□ 2.49
PTCD3-217ENST00000488801 RAPGEF6Q8TEU7 1601 aa30.61■■■□□ 2.49
PTCD3-217ENST00000488801 FHOD3Q2V2M9 1422 aa30.6■■■□□ 2.49
PTCD3-217ENST00000488801 EHMT2Q96KQ7 1210 aa30.58■■■□□ 2.49
PTCD3-217ENST00000488801 TTBK1Q5TCY1 1321 aaPredicted RBP30.53■■■□□ 2.48
PTCD3-217ENST00000488801 DIP2BQ9P265 1576 aa30.52■■■□□ 2.48
PTCD3-217ENST00000488801 P3H3Q8IVL6 736 aa30.5■■■□□ 2.47
PTCD3-217ENST00000488801 ABCC10Q5T3U5 1492 aa30.44■■■□□ 2.46
PTCD3-217ENST00000488801 RANGAP1P46060 587 aaPredicted RBP30.44■■■□□ 2.46
PTCD3-217ENST00000488801 NUP153P49790 1475 aaKnown RBP30.44■■■□□ 2.46
PTCD3-217ENST00000488801 LRRIQ1Q96JM4 1722 aa30.42■■■□□ 2.46
PTCD3-217ENST00000488801 NPM1P06748 294 aaKnown RBP eCLIP30.41■■■□□ 2.46
PTCD3-217ENST00000488801 ASXL2Q76L83 1435 aa30.4■■■□□ 2.46
PTCD3-217ENST00000488801 CLIP1P30622 1438 aa30.39■■■□□ 2.45
PTCD3-217ENST00000488801 FMN1Q68DA7 1419 aa30.39■■■□□ 2.45
PTCD3-217ENST00000488801 HECW1Q76N89 1606 aa30.37■■■□□ 2.45
PTCD3-217ENST00000488801 GLI2P10070 1586 aa30.37■■■□□ 2.45
PTCD3-217ENST00000488801 ATP10BO94823 1461 aa30.36■■■□□ 2.45
PTCD3-217ENST00000488801 WDR7Q9Y4E6 1490 aa30.33■■■□□ 2.45
PTCD3-217ENST00000488801 PCF11O94913 1555 aaKnown RBP30.32■■■□□ 2.45
PTCD3-217ENST00000488801 CEP162Q5TB80 1403 aa30.31■■■□□ 2.44
PTCD3-217ENST00000488801 MAP3K4Q9Y6R4 1608 aa30.29■■■□□ 2.44
PTCD3-217ENST00000488801 TRHP20396 242 aaPredicted RBP30.29■■■□□ 2.44
PTCD3-217ENST00000488801 PPRC1Q5VV67 1664 aaKnown RBP30.29■■■□□ 2.44
PTCD3-217ENST00000488801 EPRSP07814 1512 aaKnown RBP30.28■■■□□ 2.44
PTCD3-217ENST00000488801 TSPOAP1O95153 1857 aa30.26■■■□□ 2.43
PTCD3-217ENST00000488801 CFAP43Q8NDM7 1665 aa30.24■■■□□ 2.43
PTCD3-217ENST00000488801 LOC105371045A0A1W2PR82 267 aa30.23■■■□□ 2.43
PTCD3-217ENST00000488801 CDK13Q14004 1512 aaKnown RBP30.22■■■□□ 2.43
PTCD3-217ENST00000488801 CASKIN1Q8WXD9 1431 aa30.21■■■□□ 2.43
PTCD3-217ENST00000488801 FYCO1Q9BQS8 1478 aa30.2■■■□□ 2.43
PTCD3-217ENST00000488801 ABCA9Q8IUA7 1624 aa30.17■■■□□ 2.42
PTCD3-217ENST00000488801 FAM69CQ0P6D2 419 aa30.14■■■□□ 2.42
PTCD3-217ENST00000488801 ARID3CA6NKF2 412 aa30.1■■■□□ 2.41
PTCD3-217ENST00000488801 CCDC18Q5T9S5 1454 aa30.1■■■□□ 2.41
PTCD3-217ENST00000488801 TTC37Q6PGP7 1564 aa30.01■■■□□ 2.39
PTCD3-217ENST00000488801 MAGI3Q5TCQ9 1506 aa30.01■■■□□ 2.39
PTCD3-217ENST00000488801 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP29.99■■■□□ 2.398e-6■□□□□ 8.1
PTCD3-217ENST00000488801 KIF14Q15058 1648 aa29.99■■■□□ 2.39
PTCD3-217ENST00000488801 VPS8Q8N3P4 1428 aa29.96■■■□□ 2.39
PTCD3-217ENST00000488801 TEX14Q8IWB6 1497 aa29.95■■■□□ 2.39
PTCD3-217ENST00000488801 TROQ12816 1431 aaPredicted RBP29.94■■■□□ 2.38
PTCD3-217ENST00000488801 MYO5CQ9NQX4 1742 aa29.93■■■□□ 2.38
PTCD3-217ENST00000488801 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP29.93■■■□□ 2.38
PTCD3-217ENST00000488801 HNRNPUL2Q1KMD3 747 aaKnown RBP29.93■■■□□ 2.38
PTCD3-217ENST00000488801 CD109Q6YHK3 1445 aa29.93■■■□□ 2.38
PTCD3-217ENST00000488801 PLEKHD1A6NEE1 506 aa29.92■■■□□ 2.38
PTCD3-217ENST00000488801 KDM6BO15054 1643 aa29.92■■■□□ 2.38
PTCD3-217ENST00000488801 KCNH8Q96L42 1107 aa29.91■■■□□ 2.38
PTCD3-217ENST00000488801 ATP1B4Q9UN42 357 aaPredicted RBP29.87■■■□□ 2.37
PTCD3-217ENST00000488801 TIAM1Q13009 1591 aa29.86■■■□□ 2.37
PTCD3-217ENST00000488801 CFAP74Q9C0B2 1584 aa29.84■■■□□ 2.37
PTCD3-217ENST00000488801 CDC42BPAQ5VT25 1732 aa29.84■■■□□ 2.37
PTCD3-217ENST00000488801 ARAP3Q8WWN8 1544 aa29.83■■■□□ 2.37
PTCD3-217ENST00000488801 CDC42BPBQ9Y5S2 1711 aa29.82■■■□□ 2.36
PTCD3-217ENST00000488801 CDK11AQ9UQ88 783 aaPredicted RBP29.82■■■□□ 2.36
PTCD3-217ENST00000488801 PREX2Q70Z35 1606 aa29.81■■■□□ 2.36
PTCD3-217ENST00000488801 EHBP1L1Q8N3D4 1523 aa29.81■■■□□ 2.36
PTCD3-217ENST00000488801 MAP3K1Q13233 1512 aa29.79■■■□□ 2.36
PTCD3-217ENST00000488801 NEO1Q92859 1461 aa29.78■■■□□ 2.36
PTCD3-217ENST00000488801 COL17A1Q9UMD9 1497 aaPredicted RBP29.76■■■□□ 2.35
PTCD3-217ENST00000488801 PLCH2O75038 1416 aa29.71■■■□□ 2.35
PTCD3-217ENST00000488801 RICTORQ6R327 1708 aa29.71■■■□□ 2.35
PTCD3-217ENST00000488801 SUPT6HQ7KZ85 1726 aaKnown RBP29.7■■■□□ 2.34
PTCD3-217ENST00000488801 FRMPD1Q5SYB0 1578 aa29.69■■■□□ 2.34
PTCD3-217ENST00000488801 PHLDB1Q86UU1 1377 aa29.69■■■□□ 2.34
PTCD3-217ENST00000488801 FANCAO15360 1455 aa29.68■■■□□ 2.34
PTCD3-217ENST00000488801 ITSN2Q9NZM3 1697 aa29.66■■■□□ 2.34
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms