RNA–Protein interactions for RNA: ENST00000488801.5

PTCD3-217, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 568 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-217ENST00000488801 NISCHQ9Y2I1 1504 aa45.59■■■■■ 4.89
PTCD3-217ENST00000488801 CCDC180Q9P1Z9 1646 aa40.67■■■■■ 4.1
PTCD3-217ENST00000488801 ABCC9O60706 1549 aa39.28■■■■□ 3.88
PTCD3-217ENST00000488801 ZCCHC6Q5VYS8 1495 aaKnown RBP38.08■■■■□ 3.69
PTCD3-217ENST00000488801 NACADO15069 1562 aa38.04■■■■□ 3.68
PTCD3-217ENST00000488801 RB1CC1Q8TDY2 1594 aa38.02■■■■□ 3.68
PTCD3-217ENST00000488801 MYO15BQ96JP2 1530 aa37.94■■■■□ 3.66
PTCD3-217ENST00000488801 DCAF1Q9Y4B6 1507 aa37.83■■■■□ 3.65
PTCD3-217ENST00000488801 DCAF8L2P0C7V8 631 aa37.52■■■■□ 3.6
PTCD3-217ENST00000488801 UNC13AQ9UPW8 1703 aa37.45■■■■□ 3.59
PTCD3-217ENST00000488801 BICRAQ9NZM4 1560 aa36.96■■■■□ 3.51
PTCD3-217ENST00000488801 SCRIBQ14160 1630 aa36.92■■■■□ 3.5
PTCD3-217ENST00000488801 SHROOM4Q9ULL8 1493 aa36.59■■■■□ 3.45
PTCD3-217ENST00000488801 PABPN1Q86U42 306 aaKnown RBP eCLIP36.57■■■■□ 3.44
PTCD3-217ENST00000488801 EIF4G1Q04637 1599 aaKnown RBP35.89■■■■□ 3.34
PTCD3-217ENST00000488801 DNAJC5BQ9UF47 199 aa35.84■■■■□ 3.33
PTCD3-217ENST00000488801 CC2D2AQ9P2K1 1620 aa35.71■■■■□ 3.31
PTCD3-217ENST00000488801 CECR2Q9BXF3 1484 aa35.43■■■■□ 3.26
PTCD3-217ENST00000488801 SMARCA4P51532 1647 aa35.43■■■■□ 3.26
PTCD3-217ENST00000488801 BAZ1AQ9NRL2 1556 aaPredicted RBP35.34■■■■□ 3.25
PTCD3-217ENST00000488801 PEG3Q9GZU2 1588 aa35.13■■■■□ 3.21
PTCD3-217ENST00000488801 MROH2BQ7Z745 1585 aa35.12■■■■□ 3.21
PTCD3-217ENST00000488801 SMARCA2P51531 1590 aa35.08■■■■□ 3.21
PTCD3-217ENST00000488801 ATAD2BQ9ULI0 1458 aa35.06■■■■□ 3.2
PTCD3-217ENST00000488801 NCAPD3P42695 1498 aa35.03■■■■□ 3.2
PTCD3-217ENST00000488801 HMGXB3Q12766 1538 aa35■■■■□ 3.19
PTCD3-217ENST00000488801 WIZO95785 1651 aa34.82■■■■□ 3.17
PTCD3-217ENST00000488801 BAZ1BQ9UIG0 1483 aaKnown RBP34.75■■■■□ 3.15
PTCD3-217ENST00000488801 RSF1Q96T23 1441 aaPredicted RBP34.72■■■■□ 3.15
PTCD3-217ENST00000488801 TOP2AP11388 1531 aaKnown RBP34.45■■■■□ 3.1
PTCD3-217ENST00000488801 LAMC3Q9Y6N6 1575 aa34.16■■■■□ 3.06
PTCD3-217ENST00000488801 NESP48681 1621 aa34.11■■■■□ 3.05
PTCD3-217ENST00000488801 PRDM2Q13029 1718 aa33.97■■■■□ 3.03
PTCD3-217ENST00000488801 CADPSQ9ULU8 1353 aa33.93■■■■□ 3.02
PTCD3-217ENST00000488801 CCDC88BA6NC98 1476 aa33.93■■■■□ 3.02
PTCD3-217ENST00000488801 KIF21AQ7Z4S6 1674 aa33.92■■■■□ 3.02
PTCD3-217ENST00000488801 CFTRP13569 1480 aa33.86■■■■□ 3.01
PTCD3-217ENST00000488801 ERCC6Q03468 1493 aa33.8■■■■□ 3
PTCD3-217ENST00000488801 THOC2Q8NI27 1593 aaKnown RBP33.76■■■□□ 2.99
PTCD3-217ENST00000488801 PDS5BQ9NTI5 1447 aa33.74■■■□□ 2.99
PTCD3-217ENST00000488801 SUPT5HO00267 1087 aaKnown RBP33.65■■■□□ 2.98
PTCD3-217ENST00000488801 FANCD2Q9BXW9 1451 aa33.58■■■□□ 2.97
PTCD3-217ENST00000488801 CUX2O14529 1486 aa33.54■■■□□ 2.96
PTCD3-217ENST00000488801 CEP164Q9UPV0 1460 aa33.54■■■□□ 2.96
PTCD3-217ENST00000488801 MRC2Q9UBG0 1479 aa33.48■■■□□ 2.95
PTCD3-217ENST00000488801 WDR62O43379 1518 aa33.47■■■□□ 2.95
PTCD3-217ENST00000488801 URB2Q14146 1524 aaKnown RBP33.3■■■□□ 2.92
PTCD3-217ENST00000488801 DNMBPQ6XZF7 1577 aa33.15■■■□□ 2.9
PTCD3-217ENST00000488801 TOPBP1Q92547 1522 aa33.12■■■□□ 2.89
PTCD3-217ENST00000488801 ABCC8Q09428 1581 aa33.09■■■□□ 2.89
PTCD3-217ENST00000488801 CUX1P39880 1505 aa32.96■■■□□ 2.87
PTCD3-217ENST00000488801 TARBP1Q13395 1621 aaKnown RBP32.87■■■□□ 2.85
PTCD3-217ENST00000488801 BIVM-ERCC5R4GMW8 1640 aa32.85■■■□□ 2.85
PTCD3-217ENST00000488801 POLA1P09884 1462 aaPredicted RBP32.84■■■□□ 2.85
PTCD3-217ENST00000488801 IFT140Q96RY7 1462 aa32.83■■■□□ 2.85
PTCD3-217ENST00000488801 TOP2BQ02880 1626 aa32.78■■■□□ 2.84
PTCD3-217ENST00000488801 FGD5Q6ZNL6 1462 aa32.77■■■□□ 2.84
PTCD3-217ENST00000488801 WDR97A6NE52 1622 aa32.77■■■□□ 2.84
PTCD3-217ENST00000488801 SYNJ1O43426 1573 aa32.76■■■□□ 2.84
PTCD3-217ENST00000488801 WRNQ14191 1432 aaPredicted RBP eCLIP32.7■■■□□ 2.83
PTCD3-217ENST00000488801 EIF4G3O43432 1585 aaKnown RBP32.69■■■□□ 2.82
PTCD3-217ENST00000488801 ZNF608Q9ULD9 1512 aaPredicted RBP32.67■■■□□ 2.82
PTCD3-217ENST00000488801 RAD54L2Q9Y4B4 1467 aa32.62■■■□□ 2.81
PTCD3-217ENST00000488801 SOGA1O94964 1423 aa32.57■■■□□ 2.8
PTCD3-217ENST00000488801 ABCA10Q8WWZ4 1543 aa32.51■■■□□ 2.79
PTCD3-217ENST00000488801 ABCA5Q8WWZ7 1642 aa32.48■■■□□ 2.79
PTCD3-217ENST00000488801 PBRM1Q86U86 1689 aa32.45■■■□□ 2.79
PTCD3-217ENST00000488801 AQRO60306 1485 aaKnown RBP eCLIP32.42■■■□□ 2.782e-7■■■■■ 29.4
PTCD3-217ENST00000488801 TDRD9Q8NDG6 1382 aaKnown RBP32.33■■■□□ 2.77
PTCD3-217ENST00000488801 CHD1O14646 1710 aa32.31■■■□□ 2.76
PTCD3-217ENST00000488801 GAPVD1Q14C86 1478 aa32.28■■■□□ 2.76
PTCD3-217ENST00000488801 GRIN2BQ13224 1484 aa32.25■■■□□ 2.75
PTCD3-217ENST00000488801 MAGI1Q96QZ7 1491 aaPredicted RBP32.22■■■□□ 2.75
PTCD3-217ENST00000488801 SNAPC4Q5SXM2 1469 aa32.2■■■□□ 2.75
PTCD3-217ENST00000488801 ERICH3Q5RHP9 1530 aa32.14■■■□□ 2.74
PTCD3-217ENST00000488801 ADAMTS12P58397 1594 aa32.12■■■□□ 2.73
PTCD3-217ENST00000488801 DNAJC5Q9H3Z4 198 aa32.12■■■□□ 2.73
PTCD3-217ENST00000488801 SYNJ2O15056 1496 aa32.05■■■□□ 2.72
PTCD3-217ENST00000488801 KIF27Q86VH2 1401 aa31.97■■■□□ 2.71
PTCD3-217ENST00000488801 CUL7Q14999 1698 aa31.95■■■□□ 2.71
PTCD3-217ENST00000488801 OSCARQ8IYS5 282 aa31.93■■■□□ 2.7
PTCD3-217ENST00000488801 CLASP1Q7Z460 1538 aa31.9■■■□□ 2.7
PTCD3-217ENST00000488801 FHAD1B1AJZ9 1412 aa31.9■■■□□ 2.7
PTCD3-217ENST00000488801 GRIN2AQ12879 1464 aa31.89■■■□□ 2.7
PTCD3-217ENST00000488801 TRIM41Q8WV44 630 aa31.81■■■□□ 2.68
PTCD3-217ENST00000488801 IGF1RP08069 1367 aa31.81■■■□□ 2.68
PTCD3-217ENST00000488801 CEP170Q5SW79 1584 aa31.8■■■□□ 2.68
PTCD3-217ENST00000488801 CHMP7Q8WUX9 453 aaPredicted RBP31.78■■■□□ 2.68
PTCD3-217ENST00000488801 RUSC2Q8N2Y8 1516 aa31.78■■■□□ 2.68
PTCD3-217ENST00000488801 FBLN2P98095 1184 aa31.77■■■□□ 2.68
PTCD3-217ENST00000488801 NUP160Q12769 1436 aa31.76■■■□□ 2.68
PTCD3-217ENST00000488801 RIMBP3CA6NJZ7 1639 aa31.71■■■□□ 2.67
PTCD3-217ENST00000488801 RIMBP3BA6NNM3 1639 aa31.71■■■□□ 2.67
PTCD3-217ENST00000488801 RIMBP3Q9UFD9 1639 aa31.71■■■□□ 2.67
PTCD3-217ENST00000488801 SHROOM2Q13796 1616 aa31.66■■■□□ 2.66
PTCD3-217ENST00000488801 ARHGEF11O15085 1522 aa31.65■■■□□ 2.66
PTCD3-217ENST00000488801 CHIC1Q5VXU3 224 aa31.63■■■□□ 2.65
PTCD3-217ENST00000488801 CARMIL1Q5VZK9 1371 aa31.59■■■□□ 2.65
PTCD3-217ENST00000488801 EEA1Q15075 1411 aa31.51■■■□□ 2.64
PTCD3-217ENST00000488801 PRXQ9BXM0 1461 aa31.5■■■□□ 2.63
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms