RNA–Protein interactions for RNA: ENST00000488186.5

C9orf3-219, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 5

Gene C9orf3, Length 1,211 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-219ENST00000488186 SHROOM2Q13796 1616 aa26.08■■□□□ 1.77
C9orf3-219ENST00000488186 KIAA0586Q9BVV6 1533 aa26.04■■□□□ 1.76
C9orf3-219ENST00000488186 RAPGEF2Q9Y4G8 1499 aa26.04■■□□□ 1.76
C9orf3-219ENST00000488186 ARAP1Q96P48 1450 aa25.99■■□□□ 1.75
C9orf3-219ENST00000488186 JPH4Q96JJ6 628 aa25.98■■□□□ 1.75
C9orf3-219ENST00000488186 PRXQ9BXM0 1461 aa25.98■■□□□ 1.75
C9orf3-219ENST00000488186 CYB5RLQ6IPT4 315 aa25.92■■□□□ 1.74
C9orf3-219ENST00000488186 PRG4Q92954 1404 aaPredicted RBP25.88■■□□□ 1.73
C9orf3-219ENST00000488186 ERCC6L2Q5T890 1561 aa25.86■■□□□ 1.73
C9orf3-219ENST00000488186 IQGAP2Q13576 1575 aa25.85■■□□□ 1.73
C9orf3-219ENST00000488186 EHMT2Q96KQ7 1210 aa25.82■■□□□ 1.72
C9orf3-219ENST00000488186 CTTNBP2Q8WZ74 1663 aa25.77■■□□□ 1.72
C9orf3-219ENST00000488186 UGGT2Q9NYU1 1516 aa25.77■■□□□ 1.72
C9orf3-219ENST00000488186 CARMIL2Q6F5E8 1435 aa25.75■■□□□ 1.71
C9orf3-219ENST00000488186 UBTFP17480 764 aaKnown RBP25.74■■□□□ 1.71
C9orf3-219ENST00000488186 KIF21BO75037 1637 aa25.73■■□□□ 1.71
C9orf3-219ENST00000488186 GOLGA3Q08378 1498 aa25.67■■□□□ 1.7
C9orf3-219ENST00000488186 DISP1Q96F81 1524 aa25.67■■□□□ 1.7
C9orf3-219ENST00000488186 TNIKQ9UKE5 1360 aa25.65■■□□□ 1.7
C9orf3-219ENST00000488186 RANGAP1P46060 587 aaPredicted RBP25.62■■□□□ 1.69
C9orf3-219ENST00000488186 PTPRGP23470 1445 aa25.61■■□□□ 1.69
C9orf3-219ENST00000488186 KIAA0556O60303 1618 aa25.59■■□□□ 1.69
C9orf3-219ENST00000488186 TTBK1Q5TCY1 1321 aaPredicted RBP25.57■■□□□ 1.68
C9orf3-219ENST00000488186 UHRF1BP1LA0JNW5 1464 aa25.5■■□□□ 1.67
C9orf3-219ENST00000488186 ADCY10Q96PN6 1610 aa25.49■■□□□ 1.67
C9orf3-219ENST00000488186 P3H3Q8IVL6 736 aa25.48■■□□□ 1.67
C9orf3-219ENST00000488186 SAMD9Q5K651 1589 aa25.47■■□□□ 1.67
C9orf3-219ENST00000488186 UACAQ9BZF9 1416 aa25.45■■□□□ 1.66
C9orf3-219ENST00000488186 NPM1P06748 294 aaKnown RBP eCLIP25.44■■□□□ 1.66
C9orf3-219ENST00000488186 LOC105371045A0A1W2PR82 267 aa25.42■■□□□ 1.66
C9orf3-219ENST00000488186 MAPKBP1O60336 1514 aa25.42■■□□□ 1.66
C9orf3-219ENST00000488186 ABCC2Q92887 1545 aa25.41■■□□□ 1.66
C9orf3-219ENST00000488186 EFCAB5A4FU69 1503 aa25.39■■□□□ 1.66
C9orf3-219ENST00000488186 KDM5BQ9UGL1 1544 aa25.35■■□□□ 1.65
C9orf3-219ENST00000488186 ABCA8O94911 1581 aa25.35■■□□□ 1.65
C9orf3-219ENST00000488186 TRHP20396 242 aaPredicted RBP25.33■■□□□ 1.65
C9orf3-219ENST00000488186 PLB1Q6P1J6 1458 aa25.29■■□□□ 1.64
C9orf3-219ENST00000488186 FHOD3Q2V2M9 1422 aa25.29■■□□□ 1.64
C9orf3-219ENST00000488186 ABCC10Q5T3U5 1492 aa25.27■■□□□ 1.64
C9orf3-219ENST00000488186 CLIP1P30622 1438 aa25.24■■□□□ 1.63
C9orf3-219ENST00000488186 KIF13AQ9H1H9 1805 aa25.23■■□□□ 1.63
C9orf3-219ENST00000488186 ARHGAP35Q9NRY4 1499 aa25.22■■□□□ 1.63
C9orf3-219ENST00000488186 ZCCHC11Q5TAX3 1644 aaKnown RBP25.22■■□□□ 1.63
C9orf3-219ENST00000488186 ASXL2Q76L83 1435 aa25.19■■□□□ 1.62
C9orf3-219ENST00000488186 RAPGEF6Q8TEU7 1601 aa25.19■■□□□ 1.62
C9orf3-219ENST00000488186 DIP2BQ9P265 1576 aa25.18■■□□□ 1.62
C9orf3-219ENST00000488186 ATP1B4Q9UN42 357 aaPredicted RBP25.17■■□□□ 1.62
C9orf3-219ENST00000488186 CEP162Q5TB80 1403 aa25.17■■□□□ 1.62
C9orf3-219ENST00000488186 FMN1Q68DA7 1419 aa25.15■■□□□ 1.62
C9orf3-219ENST00000488186 GLI2P10070 1586 aa25.14■■□□□ 1.62
C9orf3-219ENST00000488186 ARID3CA6NKF2 412 aa25.12■■□□□ 1.61
C9orf3-219ENST00000488186 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.12■■□□□ 1.61
C9orf3-219ENST00000488186 FAM69CQ0P6D2 419 aa25.12■■□□□ 1.61
C9orf3-219ENST00000488186 HNRNPUL2Q1KMD3 747 aaKnown RBP25.12■■□□□ 1.61
C9orf3-219ENST00000488186 ATP10BO94823 1461 aa25.12■■□□□ 1.61
C9orf3-219ENST00000488186 NUP153P49790 1475 aaKnown RBP25.09■■□□□ 1.61
C9orf3-219ENST00000488186 WDR7Q9Y4E6 1490 aa25.09■■□□□ 1.61
C9orf3-219ENST00000488186 EPRSP07814 1512 aaKnown RBP25.07■■□□□ 1.6
C9orf3-219ENST00000488186 HECW1Q76N89 1606 aa24.97■■□□□ 1.59
C9orf3-219ENST00000488186 MAP3K4Q9Y6R4 1608 aa24.97■■□□□ 1.59
C9orf3-219ENST00000488186 KCNH8Q96L42 1107 aa24.94■■□□□ 1.58
C9orf3-219ENST00000488186 CFAP43Q8NDM7 1665 aa24.94■■□□□ 1.58
C9orf3-219ENST00000488186 CASKIN1Q8WXD9 1431 aa24.94■■□□□ 1.58
C9orf3-219ENST00000488186 PLEKHD1A6NEE1 506 aa24.93■■□□□ 1.58
C9orf3-219ENST00000488186 CDK11AQ9UQ88 783 aaPredicted RBP24.92■■□□□ 1.58
C9orf3-219ENST00000488186 TSPOAP1O95153 1857 aa24.9■■□□□ 1.58
C9orf3-219ENST00000488186 PPRC1Q5VV67 1664 aaKnown RBP24.9■■□□□ 1.58
C9orf3-219ENST00000488186 TEX14Q8IWB6 1497 aa24.88■■□□□ 1.57
C9orf3-219ENST00000488186 FYCO1Q9BQS8 1478 aa24.88■■□□□ 1.57
C9orf3-219ENST00000488186 PCF11O94913 1555 aaKnown RBP24.88■■□□□ 1.57
C9orf3-219ENST00000488186 MAGI3Q5TCQ9 1506 aa24.87■■□□□ 1.57
C9orf3-219ENST00000488186 ABCA9Q8IUA7 1624 aa24.87■■□□□ 1.57
C9orf3-219ENST00000488186 CD109Q6YHK3 1445 aa24.86■■□□□ 1.57
C9orf3-219ENST00000488186 CCDC18Q5T9S5 1454 aa24.85■■□□□ 1.57
C9orf3-219ENST00000488186 CDK13Q14004 1512 aaKnown RBP24.85■■□□□ 1.57
C9orf3-219ENST00000488186 VPS8Q8N3P4 1428 aa24.84■■□□□ 1.57
C9orf3-219ENST00000488186 LRRIQ1Q96JM4 1722 aa24.81■■□□□ 1.56
C9orf3-219ENST00000488186 APLP2Q06481 763 aa24.78■■□□□ 1.56
C9orf3-219ENST00000488186 PHLDB1Q86UU1 1377 aa24.78■■□□□ 1.56
C9orf3-219ENST00000488186 TROQ12816 1431 aaPredicted RBP24.75■■□□□ 1.55
C9orf3-219ENST00000488186 KDM6BO15054 1643 aa24.75■■□□□ 1.55
C9orf3-219ENST00000488186 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP24.72■■□□□ 1.55
C9orf3-219ENST00000488186 NEO1Q92859 1461 aa24.69■■□□□ 1.54
C9orf3-219ENST00000488186 MTUS2Q5JR59 1369 aa24.67■■□□□ 1.54
C9orf3-219ENST00000488186 ARAP3Q8WWN8 1544 aa24.67■■□□□ 1.54
C9orf3-219ENST00000488186 KIF14Q15058 1648 aa24.66■■□□□ 1.54
C9orf3-219ENST00000488186 TTC37Q6PGP7 1564 aa24.64■■□□□ 1.54
C9orf3-219ENST00000488186 COL17A1Q9UMD9 1497 aaPredicted RBP24.64■■□□□ 1.53
C9orf3-219ENST00000488186 PLCH2O75038 1416 aa24.63■■□□□ 1.53
C9orf3-219ENST00000488186 CFAP74Q9C0B2 1584 aa24.62■■□□□ 1.53
C9orf3-219ENST00000488186 MYO5CQ9NQX4 1742 aa24.59■■□□□ 1.53
C9orf3-219ENST00000488186 TIAM1Q13009 1591 aa24.58■■□□□ 1.52
C9orf3-219ENST00000488186 MAP3K1Q13233 1512 aa24.57■■□□□ 1.52
C9orf3-219ENST00000488186 FANCAO15360 1455 aa24.57■■□□□ 1.52
C9orf3-219ENST00000488186 AKNAQ7Z591 1439 aa24.53■■□□□ 1.52
C9orf3-219ENST00000488186 EHBP1L1Q8N3D4 1523 aa24.53■■□□□ 1.52
C9orf3-219ENST00000488186 KANK4Q5T7N3 995 aaPredicted RBP24.52■■□□□ 1.52
C9orf3-219ENST00000488186 EFCAB2Q5VUJ9 269 aa24.52■■□□□ 1.52
C9orf3-219ENST00000488186 LRRC9Q6ZRR7 1453 aa24.51■■□□□ 1.51
C9orf3-219ENST00000488186 PREX2Q70Z35 1606 aa24.48■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 101.8 ms