RNA–Protein interactions for RNA: ENST00000478531.5

BRCA1-215, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,972 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-215ENST00000478531 FAM9AQ8IZU1 332 aaPredicted RBP11.53□□□□□ -0.56
BRCA1-215ENST00000478531 SHROOM2Q13796 1616 aa11.53□□□□□ -0.56
BRCA1-215ENST00000478531 EEA1Q15075 1411 aa11.52□□□□□ -0.57
BRCA1-215ENST00000478531 ERCC6L2Q5T890 1561 aa11.51□□□□□ -0.57
BRCA1-215ENST00000478531 CTTNBP2Q8WZ74 1663 aa11.51□□□□□ -0.57
BRCA1-215ENST00000478531 ARAP1Q96P48 1450 aa11.5□□□□□ -0.57
BRCA1-215ENST00000478531 KIAA0586Q9BVV6 1533 aa11.5□□□□□ -0.57
BRCA1-215ENST00000478531 PRXQ9BXM0 1461 aa11.5□□□□□ -0.57
BRCA1-215ENST00000478531 SENP3Q9H4L4 574 aaPredicted RBP11.49□□□□□ -0.57
BRCA1-215ENST00000478531 IQGAP2Q13576 1575 aa11.49□□□□□ -0.57
BRCA1-215ENST00000478531 CSRNP3Q8WYN3 585 aa11.48□□□□□ -0.57
BRCA1-215ENST00000478531 PRG4Q92954 1404 aaPredicted RBP11.47□□□□□ -0.57
BRCA1-215ENST00000478531 CYB5RLQ6IPT4 315 aa11.46□□□□□ -0.58
BRCA1-215ENST00000478531 JPH4Q96JJ6 628 aa11.46□□□□□ -0.58
BRCA1-215ENST00000478531 KIF21BO75037 1637 aa11.44□□□□□ -0.58
BRCA1-215ENST00000478531 EHMT2Q96KQ7 1210 aa11.43□□□□□ -0.58
BRCA1-215ENST00000478531 UGGT2Q9NYU1 1516 aa11.39□□□□□ -0.59
BRCA1-215ENST00000478531 CARMIL2Q6F5E8 1435 aa11.38□□□□□ -0.59
BRCA1-215ENST00000478531 KIAA0556O60303 1618 aa11.38□□□□□ -0.59
BRCA1-215ENST00000478531 TTBK1Q5TCY1 1321 aaPredicted RBP11.38□□□□□ -0.59
BRCA1-215ENST00000478531 DISP1Q96F81 1524 aa11.37□□□□□ -0.59
BRCA1-215ENST00000478531 GOLGA3Q08378 1498 aa11.37□□□□□ -0.59
BRCA1-215ENST00000478531 RANGAP1P46060 587 aaPredicted RBP11.34□□□□□ -0.59
BRCA1-215ENST00000478531 TNIKQ9UKE5 1360 aa11.33□□□□□ -0.6
BRCA1-215ENST00000478531 UBTFP17480 764 aaKnown RBP11.33□□□□□ -0.6
BRCA1-215ENST00000478531 ADCY10Q96PN6 1610 aa11.33□□□□□ -0.6
BRCA1-215ENST00000478531 PTPRGP23470 1445 aa11.32□□□□□ -0.6
BRCA1-215ENST00000478531 SAMD9Q5K651 1589 aa11.31□□□□□ -0.6
BRCA1-215ENST00000478531 P3H3Q8IVL6 736 aa11.29□□□□□ -0.6
BRCA1-215ENST00000478531 EFCAB5A4FU69 1503 aa11.26□□□□□ -0.61
BRCA1-215ENST00000478531 ABCC2Q92887 1545 aa11.25□□□□□ -0.61
BRCA1-215ENST00000478531 FHOD3Q2V2M9 1422 aa11.25□□□□□ -0.61
BRCA1-215ENST00000478531 UACAQ9BZF9 1416 aa11.25□□□□□ -0.61
BRCA1-215ENST00000478531 PLB1Q6P1J6 1458 aa11.24□□□□□ -0.61
BRCA1-215ENST00000478531 NPM1P06748 294 aaKnown RBP eCLIP11.23□□□□□ -0.61
BRCA1-215ENST00000478531 TRHP20396 242 aaPredicted RBP11.23□□□□□ -0.61
BRCA1-215ENST00000478531 ABCA8O94911 1581 aa11.23□□□□□ -0.61
BRCA1-215ENST00000478531 ZCCHC11Q5TAX3 1644 aaKnown RBP11.22□□□□□ -0.61
BRCA1-215ENST00000478531 UHRF1BP1LA0JNW5 1464 aa11.22□□□□□ -0.61
BRCA1-215ENST00000478531 RAPGEF6Q8TEU7 1601 aa11.21□□□□□ -0.61
BRCA1-215ENST00000478531 ARHGAP35Q9NRY4 1499 aa11.21□□□□□ -0.62
BRCA1-215ENST00000478531 MAPKBP1O60336 1514 aa11.21□□□□□ -0.62
BRCA1-215ENST00000478531 KIF13AQ9H1H9 1805 aa11.2□□□□□ -0.62
BRCA1-215ENST00000478531 ARID3CA6NKF2 412 aa11.18□□□□□ -0.62
BRCA1-215ENST00000478531 KDM5BQ9UGL1 1544 aa11.18□□□□□ -0.62
BRCA1-215ENST00000478531 DIP2BQ9P265 1576 aa11.16□□□□□ -0.62
BRCA1-215ENST00000478531 LOC105371045A0A1W2PR82 267 aa11.16□□□□□ -0.62
BRCA1-215ENST00000478531 CLIP1P30622 1438 aa11.16□□□□□ -0.62
BRCA1-215ENST00000478531 ASXL2Q76L83 1435 aa11.15□□□□□ -0.62
BRCA1-215ENST00000478531 FMN1Q68DA7 1419 aa11.14□□□□□ -0.63
BRCA1-215ENST00000478531 NUP153P49790 1475 aaKnown RBP11.14□□□□□ -0.63
BRCA1-215ENST00000478531 TSPOAP1O95153 1857 aa11.14□□□□□ -0.63
BRCA1-215ENST00000478531 CEP162Q5TB80 1403 aa11.14□□□□□ -0.63
BRCA1-215ENST00000478531 ABCC10Q5T3U5 1492 aa11.13□□□□□ -0.63
BRCA1-215ENST00000478531 HECW1Q76N89 1606 aa11.13□□□□□ -0.63
BRCA1-215ENST00000478531 PCF11O94913 1555 aaKnown RBP11.12□□□□□ -0.63
BRCA1-215ENST00000478531 FAM69CQ0P6D2 419 aa11.12□□□□□ -0.63
BRCA1-215ENST00000478531 ATP10BO94823 1461 aa11.12□□□□□ -0.63
BRCA1-215ENST00000478531 WDR7Q9Y4E6 1490 aa11.12□□□□□ -0.63
BRCA1-215ENST00000478531 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.11□□□□□ -0.63
BRCA1-215ENST00000478531 HNRNPUL2Q1KMD3 747 aaKnown RBP11.11□□□□□ -0.63
BRCA1-215ENST00000478531 ATP1B4Q9UN42 357 aaPredicted RBP11.11□□□□□ -0.63
BRCA1-215ENST00000478531 LRRIQ1Q96JM4 1722 aa11.11□□□□□ -0.63
BRCA1-215ENST00000478531 CDK13Q14004 1512 aaKnown RBP11.1□□□□□ -0.63
BRCA1-215ENST00000478531 EPRSP07814 1512 aaKnown RBP11.09□□□□□ -0.63
BRCA1-215ENST00000478531 GLI2P10070 1586 aa11.07□□□□□ -0.64
BRCA1-215ENST00000478531 KCNH8Q96L42 1107 aa11.07□□□□□ -0.64
BRCA1-215ENST00000478531 MAP3K4Q9Y6R4 1608 aa11.06□□□□□ -0.64
BRCA1-215ENST00000478531 CASKIN1Q8WXD9 1431 aa11.06□□□□□ -0.64
BRCA1-215ENST00000478531 FYCO1Q9BQS8 1478 aa11.05□□□□□ -0.64
BRCA1-215ENST00000478531 PPRC1Q5VV67 1664 aaKnown RBP11.05□□□□□ -0.64
BRCA1-215ENST00000478531 CFAP43Q8NDM7 1665 aa11.05□□□□□ -0.64
BRCA1-215ENST00000478531 CCDC18Q5T9S5 1454 aa11.03□□□□□ -0.64
BRCA1-215ENST00000478531 ABCA9Q8IUA7 1624 aa11.02□□□□□ -0.65
BRCA1-215ENST00000478531 PLEKHD1A6NEE1 506 aa11.01□□□□□ -0.65
BRCA1-215ENST00000478531 KIF14Q15058 1648 aa11□□□□□ -0.65
BRCA1-215ENST00000478531 TTC37Q6PGP7 1564 aa11□□□□□ -0.65
BRCA1-215ENST00000478531 CD109Q6YHK3 1445 aa10.99□□□□□ -0.65
BRCA1-215ENST00000478531 KDM6BO15054 1643 aa10.99□□□□□ -0.65
BRCA1-215ENST00000478531 TEX14Q8IWB6 1497 aa10.98□□□□□ -0.65
BRCA1-215ENST00000478531 CDK11AQ9UQ88 783 aaPredicted RBP10.98□□□□□ -0.65
BRCA1-215ENST00000478531 VPS8Q8N3P4 1428 aa10.98□□□□□ -0.65
BRCA1-215ENST00000478531 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP10.98□□□□□ -0.65
BRCA1-215ENST00000478531 MAGI3Q5TCQ9 1506 aa10.97□□□□□ -0.65
BRCA1-215ENST00000478531 TROQ12816 1431 aaPredicted RBP10.96□□□□□ -0.65
BRCA1-215ENST00000478531 MYO5CQ9NQX4 1742 aa10.96□□□□□ -0.65
BRCA1-215ENST00000478531 TIAM1Q13009 1591 aa10.93□□□□□ -0.66
BRCA1-215ENST00000478531 CFAP74Q9C0B2 1584 aa10.92□□□□□ -0.66
BRCA1-215ENST00000478531 MTUS2Q5JR59 1369 aa10.92□□□□□ -0.66
BRCA1-215ENST00000478531 EHBP1L1Q8N3D4 1523 aa10.91□□□□□ -0.66
BRCA1-215ENST00000478531 CDC42BPAQ5VT25 1732 aa10.91□□□□□ -0.66
BRCA1-215ENST00000478531 PREX2Q70Z35 1606 aa10.9□□□□□ -0.66
BRCA1-215ENST00000478531 FANCAO15360 1455 aa10.9□□□□□ -0.66
BRCA1-215ENST00000478531 CDC42BPBQ9Y5S2 1711 aa10.9□□□□□ -0.66
BRCA1-215ENST00000478531 ARHGAP5Q13017 1502 aa10.89□□□□□ -0.67
BRCA1-215ENST00000478531 NEO1Q92859 1461 aa10.89□□□□□ -0.67
BRCA1-215ENST00000478531 COL17A1Q9UMD9 1497 aaPredicted RBP10.89□□□□□ -0.67
BRCA1-215ENST00000478531 SUPT6HQ7KZ85 1726 aaKnown RBP10.88□□□□□ -0.67
BRCA1-215ENST00000478531 PLCH2O75038 1416 aa10.88□□□□□ -0.67
BRCA1-215ENST00000478531 ARAP3Q8WWN8 1544 aa10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 93.8 ms