RNA–Protein interactions for RNA: ENST00000478531.5

BRCA1-215, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,972 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-215ENST00000478531 NISCHQ9Y2I1 1504 aa16.65■□□□□ 0.26
BRCA1-215ENST00000478531 CCDC180Q9P1Z9 1646 aa14.81□□□□□ -0.04
BRCA1-215ENST00000478531 ABCC9O60706 1549 aa14.44□□□□□ -0.1
BRCA1-215ENST00000478531 DCAF8L2P0C7V8 631 aa13.92□□□□□ -0.18
BRCA1-215ENST00000478531 RB1CC1Q8TDY2 1594 aa13.9□□□□□ -0.18
BRCA1-215ENST00000478531 ZCCHC6Q5VYS8 1495 aaKnown RBP13.88□□□□□ -0.19
BRCA1-215ENST00000478531 NACADO15069 1562 aa13.87□□□□□ -0.19
BRCA1-215ENST00000478531 MYO15BQ96JP2 1530 aa13.76□□□□□ -0.21
BRCA1-215ENST00000478531 DCAF1Q9Y4B6 1507 aa13.74□□□□□ -0.21
BRCA1-215ENST00000478531 UNC13AQ9UPW8 1703 aa13.66□□□□□ -0.22
BRCA1-215ENST00000478531 AEBP2Q6ZN18 517 aaPredicted RBP13.63□□□□□ -0.23
BRCA1-215ENST00000478531 SCRIBQ14160 1630 aa13.56□□□□□ -0.24
BRCA1-215ENST00000478531 PABPN1Q86U42 306 aaKnown RBP eCLIP13.48□□□□□ -0.25
BRCA1-215ENST00000478531 BICRAQ9NZM4 1560 aa13.47□□□□□ -0.25
BRCA1-215ENST00000478531 CHIC1Q5VXU3 224 aa13.34□□□□□ -0.27
BRCA1-215ENST00000478531 SHROOM4Q9ULL8 1493 aa13.29□□□□□ -0.28
BRCA1-215ENST00000478531 DNAJC5BQ9UF47 199 aa13.14□□□□□ -0.31
BRCA1-215ENST00000478531 EIF4G1Q04637 1599 aaKnown RBP13.12□□□□□ -0.31
BRCA1-215ENST00000478531 CC2D2AQ9P2K1 1620 aa13.07□□□□□ -0.32
BRCA1-215ENST00000478531 CECR2Q9BXF3 1484 aa12.97□□□□□ -0.33
BRCA1-215ENST00000478531 SMARCA4P51532 1647 aa12.94□□□□□ -0.34
BRCA1-215ENST00000478531 BAZ1AQ9NRL2 1556 aaPredicted RBP12.91□□□□□ -0.34
BRCA1-215ENST00000478531 MROH2BQ7Z745 1585 aa12.85□□□□□ -0.35
BRCA1-215ENST00000478531 SMARCA2P51531 1590 aa12.82□□□□□ -0.36
BRCA1-215ENST00000478531 ATAD2BQ9ULI0 1458 aa12.81□□□□□ -0.36
BRCA1-215ENST00000478531 PEG3Q9GZU2 1588 aa12.77□□□□□ -0.36
BRCA1-215ENST00000478531 NCAPD3P42695 1498 aa12.77□□□□□ -0.37
BRCA1-215ENST00000478531 HMGXB3Q12766 1538 aa12.76□□□□□ -0.37
BRCA1-215ENST00000478531 WIZO95785 1651 aa12.75□□□□□ -0.37
BRCA1-215ENST00000478531 BAZ1BQ9UIG0 1483 aaKnown RBP12.74□□□□□ -0.37
BRCA1-215ENST00000478531 RSF1Q96T23 1441 aaPredicted RBP12.69□□□□□ -0.38
BRCA1-215ENST00000478531 TOP2AP11388 1531 aaKnown RBP12.59□□□□□ -0.39
BRCA1-215ENST00000478531 NESP48681 1621 aa12.52□□□□□ -0.41
BRCA1-215ENST00000478531 LAMC3Q9Y6N6 1575 aa12.47□□□□□ -0.41
BRCA1-215ENST00000478531 SUPT5HO00267 1087 aaKnown RBP12.46□□□□□ -0.41
BRCA1-215ENST00000478531 ERCC6Q03468 1493 aa12.46□□□□□ -0.42
BRCA1-215ENST00000478531 CCDC88BA6NC98 1476 aa12.42□□□□□ -0.42
BRCA1-215ENST00000478531 KIF21AQ7Z4S6 1674 aa12.42□□□□□ -0.42
BRCA1-215ENST00000478531 CADPSQ9ULU8 1353 aa12.41□□□□□ -0.42
BRCA1-215ENST00000478531 PRDM2Q13029 1718 aa12.37□□□□□ -0.43
BRCA1-215ENST00000478531 PDS5BQ9NTI5 1447 aa12.37□□□□□ -0.43
BRCA1-215ENST00000478531 CFTRP13569 1480 aa12.35□□□□□ -0.43
BRCA1-215ENST00000478531 THOC2Q8NI27 1593 aaKnown RBP12.32□□□□□ -0.44
BRCA1-215ENST00000478531 FANCD2Q9BXW9 1451 aa12.3□□□□□ -0.44
BRCA1-215ENST00000478531 CEP164Q9UPV0 1460 aa12.29□□□□□ -0.44
BRCA1-215ENST00000478531 CUX2O14529 1486 aa12.25□□□□□ -0.45
BRCA1-215ENST00000478531 MRC2Q9UBG0 1479 aa12.25□□□□□ -0.45
BRCA1-215ENST00000478531 WDR62O43379 1518 aa12.21□□□□□ -0.45
BRCA1-215ENST00000478531 URB2Q14146 1524 aaKnown RBP12.18□□□□□ -0.46
BRCA1-215ENST00000478531 DNMBPQ6XZF7 1577 aa12.12□□□□□ -0.47
BRCA1-215ENST00000478531 TOPBP1Q92547 1522 aa12.12□□□□□ -0.47
BRCA1-215ENST00000478531 ABCC8Q09428 1581 aa12.08□□□□□ -0.48
BRCA1-215ENST00000478531 CUX1P39880 1505 aa12.06□□□□□ -0.48
BRCA1-215ENST00000478531 POLA1P09884 1462 aaPredicted RBP12.02□□□□□ -0.49
BRCA1-215ENST00000478531 IFT140Q96RY7 1462 aa12.01□□□□□ -0.49
BRCA1-215ENST00000478531 FGD5Q6ZNL6 1462 aa12□□□□□ -0.49
BRCA1-215ENST00000478531 SYNJ1O43426 1573 aa11.99□□□□□ -0.49
BRCA1-215ENST00000478531 TARBP1Q13395 1621 aaKnown RBP11.99□□□□□ -0.49
BRCA1-215ENST00000478531 WRNQ14191 1432 aaPredicted RBP eCLIP11.99□□□□□ -0.49
BRCA1-215ENST00000478531 BIVM-ERCC5R4GMW8 1640 aa11.98□□□□□ -0.49
BRCA1-215ENST00000478531 ZNF608Q9ULD9 1512 aaPredicted RBP11.98□□□□□ -0.49
BRCA1-215ENST00000478531 RAD54L2Q9Y4B4 1467 aa11.98□□□□□ -0.49
BRCA1-215ENST00000478531 TOP2BQ02880 1626 aa11.97□□□□□ -0.49
BRCA1-215ENST00000478531 EIF4G3O43432 1585 aaKnown RBP11.97□□□□□ -0.49
BRCA1-215ENST00000478531 SOGA1O94964 1423 aa11.95□□□□□ -0.5
BRCA1-215ENST00000478531 WDR97A6NE52 1622 aa11.94□□□□□ -0.5
BRCA1-215ENST00000478531 AQRO60306 1485 aaKnown RBP eCLIP11.91□□□□□ -0.5
BRCA1-215ENST00000478531 TDRD9Q8NDG6 1382 aaKnown RBP11.89□□□□□ -0.51
BRCA1-215ENST00000478531 PBRM1Q86U86 1689 aa11.87□□□□□ -0.51
BRCA1-215ENST00000478531 ABCA10Q8WWZ4 1543 aa11.87□□□□□ -0.51
BRCA1-215ENST00000478531 ABCA5Q8WWZ7 1642 aa11.85□□□□□ -0.51
BRCA1-215ENST00000478531 CHD1O14646 1710 aa11.83□□□□□ -0.52
BRCA1-215ENST00000478531 GAPVD1Q14C86 1478 aa11.83□□□□□ -0.52
BRCA1-215ENST00000478531 SNAPC4Q5SXM2 1469 aa11.81□□□□□ -0.52
BRCA1-215ENST00000478531 GRIN2BQ13224 1484 aa11.81□□□□□ -0.52
BRCA1-215ENST00000478531 FBLN2P98095 1184 aa11.78□□□□□ -0.52
BRCA1-215ENST00000478531 PHF23Q9BUL5 403 aaPredicted RBP11.78□□□□□ -0.52
BRCA1-215ENST00000478531 MAGI1Q96QZ7 1491 aaPredicted RBP11.77□□□□□ -0.52
BRCA1-215ENST00000478531 DNAJC5Q9H3Z4 198 aa11.77□□□□□ -0.53
BRCA1-215ENST00000478531 ADAMTS12P58397 1594 aa11.74□□□□□ -0.53
BRCA1-215ENST00000478531 TRIM41Q8WV44 630 aa11.74□□□□□ -0.53
BRCA1-215ENST00000478531 ERICH3Q5RHP9 1530 aa11.73□□□□□ -0.53
BRCA1-215ENST00000478531 OSCARQ8IYS5 282 aa11.73□□□□□ -0.53
BRCA1-215ENST00000478531 SYNJ2O15056 1496 aa11.73□□□□□ -0.53
BRCA1-215ENST00000478531 KIF27Q86VH2 1401 aa11.72□□□□□ -0.53
BRCA1-215ENST00000478531 CHMP7Q8WUX9 453 aaPredicted RBP11.71□□□□□ -0.53
BRCA1-215ENST00000478531 CUL7Q14999 1698 aa11.68□□□□□ -0.54
BRCA1-215ENST00000478531 FHAD1B1AJZ9 1412 aa11.67□□□□□ -0.54
BRCA1-215ENST00000478531 GRIN2AQ12879 1464 aa11.67□□□□□ -0.54
BRCA1-215ENST00000478531 RUSC2Q8N2Y8 1516 aa11.65□□□□□ -0.54
BRCA1-215ENST00000478531 CLASP1Q7Z460 1538 aa11.64□□□□□ -0.55
BRCA1-215ENST00000478531 IGF1RP08069 1367 aa11.64□□□□□ -0.55
BRCA1-215ENST00000478531 CEP170Q5SW79 1584 aa11.63□□□□□ -0.55
BRCA1-215ENST00000478531 RIMBP3CA6NJZ7 1639 aa11.61□□□□□ -0.55
BRCA1-215ENST00000478531 RIMBP3BA6NNM3 1639 aa11.61□□□□□ -0.55
BRCA1-215ENST00000478531 RIMBP3Q9UFD9 1639 aa11.61□□□□□ -0.55
BRCA1-215ENST00000478531 ARHGEF11O15085 1522 aa11.6□□□□□ -0.55
BRCA1-215ENST00000478531 NUP160Q12769 1436 aa11.59□□□□□ -0.55
BRCA1-215ENST00000478531 CARMIL1Q5VZK9 1371 aa11.59□□□□□ -0.55
BRCA1-215ENST00000478531 RAPGEF2Q9Y4G8 1499 aa11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 68.5 ms