RNA–Protein interactions for RNA: ENST00000477561.5

HDAC6-221, Transcript of histone deacetylase 6, humanhuman

TSL 5

Gene HDAC6, Length 764 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-221ENST00000477561 CARMIL1Q5VZK9 1371 aa14.09□□□□□ -0.15
HDAC6-221ENST00000477561 JPH4Q96JJ6 628 aa14.08□□□□□ -0.16
HDAC6-221ENST00000477561 SENP3Q9H4L4 574 aaPredicted RBP14.07□□□□□ -0.16
HDAC6-221ENST00000477561 CUL7Q14999 1698 aa14.07□□□□□ -0.16
HDAC6-221ENST00000477561 PRG4Q92954 1404 aaPredicted RBP14.06□□□□□ -0.16
HDAC6-221ENST00000477561 SHROOM2Q13796 1616 aa14.05□□□□□ -0.16
HDAC6-221ENST00000477561 TRHP20396 242 aaPredicted RBP14.04□□□□□ -0.16
HDAC6-221ENST00000477561 KIAA0586Q9BVV6 1533 aa14□□□□□ -0.17
HDAC6-221ENST00000477561 RAPGEF2Q9Y4G8 1499 aa13.97□□□□□ -0.17
HDAC6-221ENST00000477561 TTBK1Q5TCY1 1321 aaPredicted RBP13.95□□□□□ -0.18
HDAC6-221ENST00000477561 IQGAP2Q13576 1575 aa13.91□□□□□ -0.18
HDAC6-221ENST00000477561 FAM9AQ8IZU1 332 aaPredicted RBP13.9□□□□□ -0.18
HDAC6-221ENST00000477561 CSRNP3Q8WYN3 585 aa13.89□□□□□ -0.19
HDAC6-221ENST00000477561 PRXQ9BXM0 1461 aa13.87□□□□□ -0.19
HDAC6-221ENST00000477561 PTPRGP23470 1445 aa13.87□□□□□ -0.19
HDAC6-221ENST00000477561 CARMIL2Q6F5E8 1435 aa13.87□□□□□ -0.19
HDAC6-221ENST00000477561 NPM1P06748 294 aaKnown RBP eCLIP13.85□□□□□ -0.19
HDAC6-221ENST00000477561 TNIKQ9UKE5 1360 aa13.84□□□□□ -0.19
HDAC6-221ENST00000477561 DISP1Q96F81 1524 aa13.84□□□□□ -0.19
HDAC6-221ENST00000477561 ADCY10Q96PN6 1610 aa13.82□□□□□ -0.2
HDAC6-221ENST00000477561 UGGT2Q9NYU1 1516 aa13.82□□□□□ -0.2
HDAC6-221ENST00000477561 CTTNBP2Q8WZ74 1663 aa13.8□□□□□ -0.2
HDAC6-221ENST00000477561 EEA1Q15075 1411 aa13.8□□□□□ -0.2
HDAC6-221ENST00000477561 EHMT2Q96KQ7 1210 aa13.78□□□□□ -0.2
HDAC6-221ENST00000477561 KIAA0556O60303 1618 aa13.78□□□□□ -0.2
HDAC6-221ENST00000477561 RANGAP1P46060 587 aaPredicted RBP13.76□□□□□ -0.21
HDAC6-221ENST00000477561 FAM69CQ0P6D2 419 aa13.76□□□□□ -0.21
HDAC6-221ENST00000477561 P3H3Q8IVL6 736 aa13.76□□□□□ -0.21
HDAC6-221ENST00000477561 UACAQ9BZF9 1416 aa13.75□□□□□ -0.21
HDAC6-221ENST00000477561 GOLGA3Q08378 1498 aa13.74□□□□□ -0.21
HDAC6-221ENST00000477561 MAPKBP1O60336 1514 aa13.73□□□□□ -0.21
HDAC6-221ENST00000477561 ABCC2Q92887 1545 aa13.72□□□□□ -0.21
HDAC6-221ENST00000477561 ABCC10Q5T3U5 1492 aa13.72□□□□□ -0.21
HDAC6-221ENST00000477561 KIF13AQ9H1H9 1805 aa13.71□□□□□ -0.21
HDAC6-221ENST00000477561 UHRF1BP1LA0JNW5 1464 aa13.71□□□□□ -0.21
HDAC6-221ENST00000477561 PLB1Q6P1J6 1458 aa13.7□□□□□ -0.22
HDAC6-221ENST00000477561 DIP2BQ9P265 1576 aa13.68□□□□□ -0.22
HDAC6-221ENST00000477561 ASXL2Q76L83 1435 aa13.68□□□□□ -0.22
HDAC6-221ENST00000477561 KIF21BO75037 1637 aa13.68□□□□□ -0.22
HDAC6-221ENST00000477561 UBTFP17480 764 aaKnown RBP13.67□□□□□ -0.22
HDAC6-221ENST00000477561 ARID3CA6NKF2 412 aa13.66□□□□□ -0.22
HDAC6-221ENST00000477561 KDM5BQ9UGL1 1544 aa13.65□□□□□ -0.22
HDAC6-221ENST00000477561 ZCCHC11Q5TAX3 1644 aaKnown RBP13.64□□□□□ -0.23
HDAC6-221ENST00000477561 ABCA8O94911 1581 aa13.63□□□□□ -0.23
HDAC6-221ENST00000477561 SAMD9Q5K651 1589 aa13.63□□□□□ -0.23
HDAC6-221ENST00000477561 FHOD3Q2V2M9 1422 aa13.62□□□□□ -0.23
HDAC6-221ENST00000477561 TSPOAP1O95153 1857 aa13.6□□□□□ -0.23
HDAC6-221ENST00000477561 KCNH8Q96L42 1107 aa13.6□□□□□ -0.23
HDAC6-221ENST00000477561 EPRSP07814 1512 aaKnown RBP13.59□□□□□ -0.23
HDAC6-221ENST00000477561 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.57□□□□□ -0.24
HDAC6-221ENST00000477561 HNRNPUL2Q1KMD3 747 aaKnown RBP13.57□□□□□ -0.24
HDAC6-221ENST00000477561 ATP10BO94823 1461 aa13.56□□□□□ -0.24
HDAC6-221ENST00000477561 WDR7Q9Y4E6 1490 aa13.56□□□□□ -0.24
HDAC6-221ENST00000477561 GLI2P10070 1586 aa13.56□□□□□ -0.24
HDAC6-221ENST00000477561 RAPGEF6Q8TEU7 1601 aa13.54□□□□□ -0.24
HDAC6-221ENST00000477561 EFCAB5A4FU69 1503 aa13.54□□□□□ -0.24
HDAC6-221ENST00000477561 NUP153P49790 1475 aaKnown RBP13.51□□□□□ -0.25
HDAC6-221ENST00000477561 ATP1B4Q9UN42 357 aaPredicted RBP13.51□□□□□ -0.25
HDAC6-221ENST00000477561 PPRC1Q5VV67 1664 aaKnown RBP13.5□□□□□ -0.25
HDAC6-221ENST00000477561 KDM6BO15054 1643 aa13.5□□□□□ -0.25
HDAC6-221ENST00000477561 ARHGAP35Q9NRY4 1499 aa13.5□□□□□ -0.25
HDAC6-221ENST00000477561 MAP3K4Q9Y6R4 1608 aa13.5□□□□□ -0.25
HDAC6-221ENST00000477561 CD109Q6YHK3 1445 aa13.48□□□□□ -0.25
HDAC6-221ENST00000477561 TEX14Q8IWB6 1497 aa13.45□□□□□ -0.26
HDAC6-221ENST00000477561 COL17A1Q9UMD9 1497 aaPredicted RBP13.45□□□□□ -0.26
HDAC6-221ENST00000477561 PLEKHD1A6NEE1 506 aa13.45□□□□□ -0.26
HDAC6-221ENST00000477561 FMN1Q68DA7 1419 aa13.44□□□□□ -0.26
HDAC6-221ENST00000477561 CFAP43Q8NDM7 1665 aa13.44□□□□□ -0.26
HDAC6-221ENST00000477561 CDK13Q14004 1512 aaKnown RBP13.43□□□□□ -0.26
HDAC6-221ENST00000477561 MAGI3Q5TCQ9 1506 aa13.42□□□□□ -0.26
HDAC6-221ENST00000477561 ABCA9Q8IUA7 1624 aa13.39□□□□□ -0.27
HDAC6-221ENST00000477561 CLIP1P30622 1438 aa13.39□□□□□ -0.27
HDAC6-221ENST00000477561 HECW1Q76N89 1606 aa13.38□□□□□ -0.27
HDAC6-221ENST00000477561 LOC105371045A0A1W2PR82 267 aa13.37□□□□□ -0.27
HDAC6-221ENST00000477561 CDK11AQ9UQ88 783 aaPredicted RBP13.34□□□□□ -0.27
HDAC6-221ENST00000477561 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.34□□□□□ -0.27
HDAC6-221ENST00000477561 CASKIN1Q8WXD9 1431 aa13.33□□□□□ -0.28
HDAC6-221ENST00000477561 PCF11O94913 1555 aaKnown RBP13.32□□□□□ -0.28
HDAC6-221ENST00000477561 KDM4FA0A1W2PPD8 638 aa13.32□□□□□ -0.28
HDAC6-221ENST00000477561 RAPGEF3O95398 923 aa13.32□□□□□ -0.28
HDAC6-221ENST00000477561 LRRIQ1Q96JM4 1722 aa13.32□□□□□ -0.28
HDAC6-221ENST00000477561 TTC37Q6PGP7 1564 aa13.32□□□□□ -0.28
HDAC6-221ENST00000477561 NEO1Q92859 1461 aa13.3□□□□□ -0.28
HDAC6-221ENST00000477561 ARAP3Q8WWN8 1544 aa13.3□□□□□ -0.28
HDAC6-221ENST00000477561 PHLDB1Q86UU1 1377 aa13.3□□□□□ -0.28
HDAC6-221ENST00000477561 CEP162Q5TB80 1403 aa13.3□□□□□ -0.28
HDAC6-221ENST00000477561 TROQ12816 1431 aaPredicted RBP13.29□□□□□ -0.28
HDAC6-221ENST00000477561 AKNAQ7Z591 1439 aa13.28□□□□□ -0.28
HDAC6-221ENST00000477561 FANCAO15360 1455 aa13.28□□□□□ -0.28
HDAC6-221ENST00000477561 KIF14Q15058 1648 aa13.28□□□□□ -0.28
HDAC6-221ENST00000477561 CCDC18Q5T9S5 1454 aa13.27□□□□□ -0.29
HDAC6-221ENST00000477561 FYCO1Q9BQS8 1478 aa13.27□□□□□ -0.29
HDAC6-221ENST00000477561 PLCH2O75038 1416 aa13.26□□□□□ -0.29
HDAC6-221ENST00000477561 EFCAB2Q5VUJ9 269 aa13.24□□□□□ -0.29
HDAC6-221ENST00000477561 DENND4BO75064 1496 aaPredicted RBP13.23□□□□□ -0.29
HDAC6-221ENST00000477561 ADGRL1O94910 1474 aa13.23□□□□□ -0.29
HDAC6-221ENST00000477561 PLPPR3Q6T4P5 718 aa13.23□□□□□ -0.29
HDAC6-221ENST00000477561 FRMPD1Q5SYB0 1578 aa13.22□□□□□ -0.29
HDAC6-221ENST00000477561 CFAP74Q9C0B2 1584 aa13.22□□□□□ -0.29
HDAC6-221ENST00000477561 SCAPERQ9BY12 1400 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms