RNA–Protein interactions for RNA: ENST00000477561.5

HDAC6-221, Transcript of histone deacetylase 6, humanhuman

TSL 5

Gene HDAC6, Length 764 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-221ENST00000477561 NISCHQ9Y2I1 1504 aa20.2■□□□□ 0.82
HDAC6-221ENST00000477561 CCDC180Q9P1Z9 1646 aa17.94■□□□□ 0.46
HDAC6-221ENST00000477561 ABCC9O60706 1549 aa17.81■□□□□ 0.44
HDAC6-221ENST00000477561 DCAF8L2P0C7V8 631 aa17.08■□□□□ 0.32
HDAC6-221ENST00000477561 RB1CC1Q8TDY2 1594 aa16.99■□□□□ 0.31
HDAC6-221ENST00000477561 NACADO15069 1562 aa16.94■□□□□ 0.3
HDAC6-221ENST00000477561 ZCCHC6Q5VYS8 1495 aaKnown RBP16.79■□□□□ 0.28
HDAC6-221ENST00000477561 MYO15BQ96JP2 1530 aa16.75■□□□□ 0.27
HDAC6-221ENST00000477561 PABPN1Q86U42 306 aaKnown RBP eCLIP16.67■□□□□ 0.26
HDAC6-221ENST00000477561 DCAF1Q9Y4B6 1507 aa16.65■□□□□ 0.26
HDAC6-221ENST00000477561 UNC13AQ9UPW8 1703 aa16.6■□□□□ 0.25
HDAC6-221ENST00000477561 AEBP2Q6ZN18 517 aaPredicted RBP16.6■□□□□ 0.25
HDAC6-221ENST00000477561 BICRAQ9NZM4 1560 aa16.51■□□□□ 0.23
HDAC6-221ENST00000477561 DNAJC5BQ9UF47 199 aa16.5■□□□□ 0.23
HDAC6-221ENST00000477561 SCRIBQ14160 1630 aa16.46■□□□□ 0.23
HDAC6-221ENST00000477561 CHIC1Q5VXU3 224 aa16.28■□□□□ 0.2
HDAC6-221ENST00000477561 SHROOM4Q9ULL8 1493 aa16.22■□□□□ 0.19
HDAC6-221ENST00000477561 EIF4G1Q04637 1599 aaKnown RBP16.08■□□□□ 0.16
HDAC6-221ENST00000477561 CC2D2AQ9P2K1 1620 aa16.05■□□□□ 0.16
HDAC6-221ENST00000477561 CECR2Q9BXF3 1484 aa15.98■□□□□ 0.15
HDAC6-221ENST00000477561 SMARCA4P51532 1647 aa15.69■□□□□ 0.1
HDAC6-221ENST00000477561 ATAD2BQ9ULI0 1458 aa15.66■□□□□ 0.1
HDAC6-221ENST00000477561 BAZ1AQ9NRL2 1556 aaPredicted RBP15.65■□□□□ 0.1
HDAC6-221ENST00000477561 NCAPD3P42695 1498 aa15.65■□□□□ 0.1
HDAC6-221ENST00000477561 SMARCA2P51531 1590 aa15.6■□□□□ 0.09
HDAC6-221ENST00000477561 MROH2BQ7Z745 1585 aa15.6■□□□□ 0.09
HDAC6-221ENST00000477561 HMGXB3Q12766 1538 aa15.53■□□□□ 0.08
HDAC6-221ENST00000477561 BAZ1BQ9UIG0 1483 aaKnown RBP15.52■□□□□ 0.08
HDAC6-221ENST00000477561 PEG3Q9GZU2 1588 aa15.5■□□□□ 0.07
HDAC6-221ENST00000477561 WIZO95785 1651 aa15.42■□□□□ 0.06
HDAC6-221ENST00000477561 RSF1Q96T23 1441 aaPredicted RBP15.37■□□□□ 0.05
HDAC6-221ENST00000477561 NESP48681 1621 aa15.37■□□□□ 0.05
HDAC6-221ENST00000477561 ERCC6Q03468 1493 aa15.34■□□□□ 0.05
HDAC6-221ENST00000477561 LAMC3Q9Y6N6 1575 aa15.24■□□□□ 0.03
HDAC6-221ENST00000477561 TOP2AP11388 1531 aaKnown RBP15.22■□□□□ 0.03
HDAC6-221ENST00000477561 CADPSQ9ULU8 1353 aa15.21■□□□□ 0.02
HDAC6-221ENST00000477561 PDS5BQ9NTI5 1447 aa15.17■□□□□ 0.02
HDAC6-221ENST00000477561 CUX2O14529 1486 aa15.16■□□□□ 0.02
HDAC6-221ENST00000477561 KIF21AQ7Z4S6 1674 aa15.14■□□□□ 0.01
HDAC6-221ENST00000477561 THOC2Q8NI27 1593 aaKnown RBP15.1■□□□□ 0.01
HDAC6-221ENST00000477561 CCDC88BA6NC98 1476 aa15.08■□□□□ 0.01
HDAC6-221ENST00000477561 CFTRP13569 1480 aa15.08■□□□□ 0
HDAC6-221ENST00000477561 FANCD2Q9BXW9 1451 aa15.04■□□□□ -0
HDAC6-221ENST00000477561 MRC2Q9UBG0 1479 aa15.02■□□□□ -0
HDAC6-221ENST00000477561 CEP164Q9UPV0 1460 aa15.01□□□□□ -0.01
HDAC6-221ENST00000477561 SUPT5HO00267 1087 aaKnown RBP14.99□□□□□ -0.01
HDAC6-221ENST00000477561 WDR62O43379 1518 aa14.96□□□□□ -0.02
HDAC6-221ENST00000477561 DNAJC5Q9H3Z4 198 aa14.91□□□□□ -0.02
HDAC6-221ENST00000477561 URB2Q14146 1524 aaKnown RBP14.9□□□□□ -0.02
HDAC6-221ENST00000477561 PRDM2Q13029 1718 aa14.89□□□□□ -0.03
HDAC6-221ENST00000477561 TOPBP1Q92547 1522 aa14.78□□□□□ -0.04
HDAC6-221ENST00000477561 ABCC8Q09428 1581 aa14.73□□□□□ -0.05
HDAC6-221ENST00000477561 DNMBPQ6XZF7 1577 aa14.73□□□□□ -0.05
HDAC6-221ENST00000477561 IFT140Q96RY7 1462 aa14.7□□□□□ -0.06
HDAC6-221ENST00000477561 ZNF608Q9ULD9 1512 aaPredicted RBP14.69□□□□□ -0.06
HDAC6-221ENST00000477561 POLA1P09884 1462 aaPredicted RBP14.64□□□□□ -0.07
HDAC6-221ENST00000477561 RAD54L2Q9Y4B4 1467 aa14.63□□□□□ -0.07
HDAC6-221ENST00000477561 CUX1P39880 1505 aa14.63□□□□□ -0.07
HDAC6-221ENST00000477561 SOGA1O94964 1423 aa14.61□□□□□ -0.07
HDAC6-221ENST00000477561 TARBP1Q13395 1621 aaKnown RBP14.61□□□□□ -0.07
HDAC6-221ENST00000477561 AQRO60306 1485 aaKnown RBP eCLIP14.61□□□□□ -0.071e-14■■■■■ 33.6
HDAC6-221ENST00000477561 FGD5Q6ZNL6 1462 aa14.6□□□□□ -0.07
HDAC6-221ENST00000477561 OSCARQ8IYS5 282 aa14.58□□□□□ -0.08
HDAC6-221ENST00000477561 EIF4G3O43432 1585 aaKnown RBP14.58□□□□□ -0.08
HDAC6-221ENST00000477561 TDRD9Q8NDG6 1382 aaKnown RBP14.58□□□□□ -0.08
HDAC6-221ENST00000477561 FBLN2P98095 1184 aa14.51□□□□□ -0.09
HDAC6-221ENST00000477561 WRNQ14191 1432 aaPredicted RBP eCLIP14.49□□□□□ -0.09
HDAC6-221ENST00000477561 SYNJ1O43426 1573 aa14.47□□□□□ -0.09
HDAC6-221ENST00000477561 TRIM41Q8WV44 630 aa14.45□□□□□ -0.1
HDAC6-221ENST00000477561 WDR97A6NE52 1622 aa14.44□□□□□ -0.1
HDAC6-221ENST00000477561 TOP2BQ02880 1626 aa14.44□□□□□ -0.1
HDAC6-221ENST00000477561 SNAPC4Q5SXM2 1469 aa14.44□□□□□ -0.1
HDAC6-221ENST00000477561 BIVM-ERCC5R4GMW8 1640 aa14.43□□□□□ -0.1
HDAC6-221ENST00000477561 ABCA10Q8WWZ4 1543 aa14.42□□□□□ -0.1
HDAC6-221ENST00000477561 CHD1O14646 1710 aa14.42□□□□□ -0.1
HDAC6-221ENST00000477561 GRIN2BQ13224 1484 aa14.42□□□□□ -0.1
HDAC6-221ENST00000477561 GAPVD1Q14C86 1478 aa14.42□□□□□ -0.1
HDAC6-221ENST00000477561 CHMP7Q8WUX9 453 aaPredicted RBP14.41□□□□□ -0.1
HDAC6-221ENST00000477561 MAGI1Q96QZ7 1491 aaPredicted RBP14.38□□□□□ -0.11
HDAC6-221ENST00000477561 ABCA5Q8WWZ7 1642 aa14.37□□□□□ -0.11
HDAC6-221ENST00000477561 PBRM1Q86U86 1689 aa14.36□□□□□ -0.11
HDAC6-221ENST00000477561 SYNJ2O15056 1496 aa14.34□□□□□ -0.11
HDAC6-221ENST00000477561 PHF23Q9BUL5 403 aaPredicted RBP14.33□□□□□ -0.12
HDAC6-221ENST00000477561 RIMBP3CA6NJZ7 1639 aa14.33□□□□□ -0.12
HDAC6-221ENST00000477561 RIMBP3BA6NNM3 1639 aa14.33□□□□□ -0.12
HDAC6-221ENST00000477561 RIMBP3Q9UFD9 1639 aa14.33□□□□□ -0.12
HDAC6-221ENST00000477561 ARHGEF11O15085 1522 aa14.31□□□□□ -0.12
HDAC6-221ENST00000477561 CYB5RLQ6IPT4 315 aa14.27□□□□□ -0.13
HDAC6-221ENST00000477561 CLASP1Q7Z460 1538 aa14.25□□□□□ -0.13
HDAC6-221ENST00000477561 ADAMTS12P58397 1594 aa14.25□□□□□ -0.13
HDAC6-221ENST00000477561 ERICH3Q5RHP9 1530 aa14.24□□□□□ -0.13
HDAC6-221ENST00000477561 GRIN2AQ12879 1464 aa14.24□□□□□ -0.13
HDAC6-221ENST00000477561 FHAD1B1AJZ9 1412 aa14.24□□□□□ -0.13
HDAC6-221ENST00000477561 KIF27Q86VH2 1401 aa14.2□□□□□ -0.14
HDAC6-221ENST00000477561 ARAP1Q96P48 1450 aa14.19□□□□□ -0.14
HDAC6-221ENST00000477561 CEP170Q5SW79 1584 aa14.18□□□□□ -0.14
HDAC6-221ENST00000477561 IGF1RP08069 1367 aa14.18□□□□□ -0.14
HDAC6-221ENST00000477561 NUP160Q12769 1436 aa14.16□□□□□ -0.14
HDAC6-221ENST00000477561 ERCC6L2Q5T890 1561 aa14.11□□□□□ -0.15
HDAC6-221ENST00000477561 RUSC2Q8N2Y8 1516 aa14.09□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms